Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47626 * 2 1 4 4 H 1.09004 * 109.46834 * 54.26582 * 3 2 1 5 5 C 1.52993 * 109.47445 * 174.26668 * 3 2 1 6 6 C 1.50698 * 109.47402 * 186.40414 * 5 3 2 7 7 O 1.21285 * 119.99915 * 355.82820 * 6 5 3 8 8 N 1.34774 * 120.00523 * 175.83162 * 6 5 3 9 9 C 1.46501 * 120.00524 * 179.97438 * 8 6 5 10 10 H 1.09008 * 109.46658 * 35.00239 * 9 8 6 11 11 C 1.52999 * 109.47055 * 275.00256 * 9 8 6 12 12 C 1.50697 * 109.47139 * 155.00006 * 9 8 6 13 13 H 1.08001 * 120.00310 * 5.40769 * 12 9 8 14 14 C 1.37884 * 119.99663 * 185.40612 * 12 9 8 15 15 N 1.31513 * 120.00065 * 5.70435 * 14 12 9 16 16 Si 1.86806 * 119.99695 * 185.70115 * 14 12 9 17 17 H 1.48498 * 109.46739 * 95.00054 * 16 14 12 18 18 H 1.48499 * 109.46825 * 214.99666 * 16 14 12 19 19 H 1.48502 * 109.47036 * 335.00095 * 16 14 12 20 20 C 1.50702 * 109.47148 * 294.27253 * 3 2 1 21 21 C 1.38234 * 119.99413 * 299.72228 * 20 3 2 22 22 C 1.38238 * 119.99657 * 179.76617 * 21 20 3 23 23 C 1.38237 * 119.99982 * 0.51019 * 22 21 20 24 24 C 1.50695 * 119.99861 * 179.72505 * 23 22 21 25 25 C 1.38242 * 119.99817 * 359.74247 * 23 22 21 26 26 C 1.38225 * 120.00160 * 119.99621 * 20 3 2 27 27 H 1.09000 * 109.47413 * 295.27185 * 1 2 3 28 28 H 1.09001 * 109.47090 * 55.26444 * 1 2 3 29 29 H 1.09004 * 109.47409 * 175.26426 * 1 2 3 30 30 H 1.09008 * 109.46740 * 120.00095 * 2 1 3 31 31 H 1.09001 * 109.47168 * 239.99660 * 2 1 3 32 32 H 1.09001 * 109.47108 * 306.40289 * 5 3 2 33 33 H 1.08999 * 109.47144 * 66.40174 * 5 3 2 34 34 H 0.97002 * 119.99455 * 0.02562 * 8 6 5 35 35 H 1.08993 * 109.47203 * 304.85773 * 11 9 8 36 36 H 1.08997 * 109.47147 * 64.86571 * 11 9 8 37 37 H 1.09005 * 109.47039 * 184.85959 * 11 9 8 38 38 H 0.96997 * 119.99742 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00470 * 359.97438 * 21 20 3 40 40 H 1.08001 * 120.00267 * 180.22582 * 22 21 20 41 41 H 1.09001 * 109.46951 * 270.01710 * 24 23 22 42 42 H 1.08991 * 109.47556 * 30.01666 * 24 23 22 43 43 H 1.08999 * 109.47057 * 150.02000 * 24 23 22 44 44 H 1.07997 * 119.99326 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.00239 * 0.02562 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5953 1.9850 0.8342 5 6 3.5632 1.4448 0.1441 6 6 4.0507 2.8619 0.3021 7 8 3.2677 3.7848 0.2240 8 7 5.3568 3.1039 0.5301 9 6 5.8308 4.4817 0.6831 10 1 5.0680 5.0743 1.1882 11 6 6.1114 5.0806 -0.6966 12 6 7.0964 4.4895 1.5010 13 1 7.5546 3.5571 1.7960 14 6 7.6695 5.6872 1.8728 15 7 7.0543 6.8198 1.6113 16 14 9.3198 5.7011 2.7480 17 1 10.4056 5.8967 1.7540 18 1 9.3471 6.8099 3.7354 19 1 9.5186 4.4078 3.4503 20 6 1.6569 2.1108 -1.2952 21 6 2.1115 1.6007 -2.4969 22 6 1.7561 2.2109 -3.6853 23 6 0.9548 3.3372 -3.6714 24 6 0.5725 4.0060 -4.9666 25 6 0.5045 3.8503 -2.4693 26 6 0.8556 3.2370 -1.2812 27 1 -0.3634 0.4387 0.9293 28 1 -0.3633 0.5856 -0.8445 29 1 -0.3634 -1.0242 -0.0848 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.8460 0.8633 1.0216 33 1 4.0129 1.0028 -0.7450 34 1 5.9831 2.3658 0.5921 35 1 6.8096 4.4402 -1.2355 36 1 5.1794 5.1547 -1.2569 37 1 6.5452 6.0738 -0.5801 38 1 7.4573 7.6623 1.8732 39 1 2.7416 0.7236 -2.5076 40 1 2.1082 1.8104 -4.6245 41 1 1.3168 4.7613 -5.2190 42 1 0.5272 3.2609 -5.7607 43 1 -0.4030 4.4797 -4.8567 44 1 -0.1212 4.7305 -2.4584 45 1 0.5045 3.6383 -0.3420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157593862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -62.837038 kcal Electronic energy + Delta-G solvation = -23254.015660 eV Core-core repulsion = 20041.279454 eV Total energy + Delta-G solvation = -3212.736206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07019 -39.89397 -37.17732 -36.35674 -34.25943 -32.85931 -31.92134 -31.65920 -30.35480 -27.67504 -27.29939 -25.31302 -23.72504 -22.89954 -22.53326 -21.09434 -20.55541 -18.79802 -17.49170 -17.32097 -17.14078 -16.33514 -15.93485 -15.85340 -15.52507 -15.16471 -14.88359 -14.68293 -14.41586 -14.31882 -14.16704 -13.91574 -13.59592 -13.29371 -13.02767 -12.95213 -12.88792 -12.77521 -12.66511 -12.55404 -12.34792 -12.15104 -12.11765 -11.92447 -11.85749 -11.45342 -11.37716 -11.11851 -10.62361 -10.48136 -9.69120 -9.64855 -9.18956 -8.19493 -6.34731 0.56545 0.63526 1.43941 1.44427 1.55576 1.99554 2.37204 2.74015 2.95208 3.12678 3.80461 3.85888 4.01518 4.11137 4.14110 4.24159 4.38222 4.47230 4.52879 4.58169 4.69479 4.69567 4.74690 4.82837 4.84826 4.89034 4.92203 4.99390 5.03416 5.07132 5.11309 5.18367 5.28149 5.36446 5.41310 5.44317 5.49419 5.63557 5.64334 5.65462 5.78966 5.91642 5.94932 6.07071 6.26757 6.75851 7.08615 7.33801 7.70225 8.89306 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.004003 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.829163 B = 6992.901798 C = 7931.071464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.032 4.032 4 H 0.060 0.940 5 C -0.124 4.124 6 C 0.490 3.510 7 O -0.588 6.588 8 N -0.712 5.712 9 C 0.272 3.728 10 H -0.003 1.003 11 C -0.124 4.124 12 C -0.545 4.545 13 H 0.074 0.926 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.971 3.029 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.260 1.260 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.142 4.142 26 C -0.107 4.107 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.403 0.597 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 -15.571 -8.651 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.051 4.051 4 H 0.078 0.922 5 C -0.164 4.164 6 C 0.278 3.722 7 O -0.468 6.468 8 N -0.362 5.362 9 C 0.168 3.832 10 H 0.015 0.985 11 C -0.183 4.183 12 C -0.583 4.583 13 H 0.092 0.908 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.795 3.205 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.184 1.184 20 C -0.065 4.065 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.125 4.125 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.238 0.762 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.897 -14.718 -8.680 20.266 hybrid contribution 0.972 0.809 0.707 1.449 sum -9.925 -13.909 -7.973 18.855 Atomic orbital electron populations 1.21742 0.95768 1.01970 1.01229 1.21572 0.96113 0.93204 1.03566 1.19997 0.93480 0.97149 0.94473 0.92194 1.21829 0.96402 0.92090 1.06052 1.21485 0.82139 0.92827 0.75761 1.90650 1.55698 1.48142 1.52346 1.46298 1.08613 1.09908 1.71340 1.18239 0.93374 0.79034 0.92583 0.98457 1.21794 0.97547 1.01201 0.97749 1.21573 1.09024 0.93514 1.34224 0.90775 1.25839 1.01491 0.94930 0.96429 1.70129 1.39654 0.98296 1.47892 0.85353 0.78936 0.78106 0.78076 1.19831 1.21356 1.18387 1.19763 0.96374 0.95233 0.95156 1.21185 1.00456 1.00923 0.91706 1.21256 0.98730 0.96144 0.98848 1.20189 0.98405 0.96592 0.95758 1.20777 1.01734 1.00560 0.93428 1.21183 1.01865 1.00292 0.92643 1.21011 0.98430 0.95721 0.97385 0.93323 0.93934 0.91234 0.89918 0.90302 0.86351 0.86865 0.76212 0.93678 0.97212 0.93229 0.92671 0.84162 0.84263 0.91547 0.90049 0.91075 0.86190 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.81 71.98 0.71 -2.01 16 2 C -0.11 -1.89 5.30 30.59 0.16 -1.73 16 3 C -0.03 -0.82 1.69 -11.54 -0.02 -0.84 16 4 H 0.06 1.81 7.71 -2.38 -0.02 1.79 16 5 C -0.12 -3.17 5.07 29.84 0.15 -3.02 16 6 C 0.49 19.24 7.59 87.66 0.66 19.91 16 7 O -0.59 -28.48 13.81 -3.05 -0.04 -28.52 16 8 N -0.71 -29.57 5.07 -446.09 -2.26 -31.83 16 9 C 0.27 14.36 2.43 44.24 0.11 14.46 16 10 H 0.00 -0.16 7.55 -2.38 -0.02 -0.18 16 11 C -0.12 -6.41 9.37 71.98 0.67 -5.74 16 12 C -0.55 -29.22 8.67 25.60 0.22 -29.00 16 13 H 0.07 3.68 7.73 -2.91 -0.02 3.66 16 14 C 0.01 0.71 5.22 84.66 0.44 1.15 16 15 N -0.92 -54.45 11.97 21.45 0.26 -54.20 16 16 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 C -0.07 -1.89 2.69 -19.87 -0.05 -1.94 16 21 C -0.12 -3.16 8.57 22.27 0.19 -2.97 16 22 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 23 C -0.11 -2.91 5.88 -19.87 -0.12 -3.02 16 24 C -0.11 -2.15 10.01 71.23 0.71 -1.43 16 25 C -0.14 -4.30 9.70 22.27 0.22 -4.08 16 26 C -0.11 -3.53 8.62 22.27 0.19 -3.34 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.90 7.26 -2.39 -0.02 0.88 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.08 1.18 7.22 -2.39 -0.02 1.16 16 32 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.11 2.36 7.17 -2.39 -0.02 2.34 16 34 H 0.40 13.86 8.53 -92.71 -0.79 13.07 16 35 H 0.04 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 2.78 6.65 -2.38 -0.02 2.77 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.14 2.73 7.04 -2.91 -0.02 2.71 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 43 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 44 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.10 3.49 7.95 -2.91 -0.02 3.46 16 Total: -1.00 -70.79 364.41 4.62 -66.17 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.17 Total: 30.59 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 4.47 Total: -26.66 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.00 Total: -86.03 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.04 Total: -28.52 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.79 4.62 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157593862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.334 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds