Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46912 * 2 1 4 4 H 1.08997 * 109.47214 * 304.99777 * 3 2 1 5 5 C 1.53009 * 109.46863 * 185.00189 * 3 2 1 6 6 C 1.50706 * 109.46748 * 65.00118 * 5 3 2 7 7 O 1.21281 * 120.00299 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99424 * 180.02562 * 6 5 3 9 9 C 1.46495 * 119.99388 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47981 * 34.99768 * 9 8 6 11 11 C 1.53002 * 109.46950 * 274.99377 * 9 8 6 12 12 C 1.50707 * 109.46964 * 155.00106 * 9 8 6 13 13 H 1.07997 * 120.00412 * 34.99750 * 12 9 8 14 14 C 1.37878 * 119.99902 * 215.00059 * 12 9 8 15 15 N 1.31508 * 120.00170 * 184.90962 * 14 12 9 16 16 Si 1.86807 * 119.99876 * 4.91088 * 14 12 9 17 17 H 1.48503 * 109.47044 * 84.83582 * 16 14 12 18 18 H 1.48503 * 109.47110 * 204.83208 * 16 14 12 19 19 H 1.48499 * 109.47347 * 324.83521 * 16 14 12 20 20 C 1.50695 * 109.47226 * 65.00807 * 3 2 1 21 21 C 1.38230 * 120.00487 * 59.71939 * 20 3 2 22 22 C 1.38237 * 120.00105 * 179.78971 * 21 20 3 23 23 C 1.38231 * 119.99943 * 0.44201 * 22 21 20 24 24 C 1.50706 * 120.00066 * 179.82988 * 23 22 21 25 25 C 1.38234 * 120.00210 * 359.81711 * 23 22 21 26 26 C 1.38240 * 119.99835 * 359.97144 * 25 23 22 27 27 H 1.08989 * 109.47478 * 59.99616 * 1 2 3 28 28 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46306 * 299.99606 * 1 2 3 30 30 H 1.09004 * 109.46532 * 239.99902 * 2 1 3 31 31 H 1.09003 * 109.47378 * 120.00217 * 2 1 3 32 32 H 1.09000 * 109.46826 * 305.00228 * 5 3 2 33 33 H 1.08997 * 109.47164 * 184.99836 * 5 3 2 34 34 H 0.97000 * 120.00441 * 359.97438 * 8 6 5 35 35 H 1.09006 * 109.47034 * 175.03948 * 11 9 8 36 36 H 1.08993 * 109.47019 * 55.04390 * 11 9 8 37 37 H 1.09001 * 109.47478 * 295.03781 * 11 9 8 38 38 H 0.96999 * 120.00090 * 179.97438 * 15 14 12 39 39 H 1.08004 * 119.99823 * 0.02562 * 21 20 3 40 40 H 1.08005 * 119.99834 * 180.27277 * 22 21 20 41 41 H 1.08998 * 109.47074 * 269.98245 * 24 23 22 42 42 H 1.09004 * 109.46747 * 29.98350 * 24 23 22 43 43 H 1.08994 * 109.47120 * 149.97839 * 24 23 22 44 44 H 1.07995 * 120.00381 * 179.97438 * 25 23 22 45 45 H 1.07995 * 120.00259 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4674 7 8 3.1043 0.5156 -2.2460 8 7 5.2611 0.7857 -1.8015 9 6 5.6440 0.2397 -3.1058 10 1 4.9075 0.5340 -3.8534 11 6 5.7038 -1.2869 -3.0221 12 6 6.9977 0.7746 -3.4965 13 1 7.7484 0.9488 -2.7399 14 6 7.2778 1.0417 -4.8198 15 7 8.4878 1.4161 -5.1733 16 14 5.9382 0.8717 -6.1107 17 1 5.1454 2.1260 -6.1695 18 1 6.5575 0.6150 -7.4358 19 1 5.0470 -0.2610 -5.7531 20 6 1.6415 2.1162 1.2877 21 6 2.0723 1.6047 2.4975 22 6 1.7102 2.2253 3.6785 23 6 0.9099 3.3520 3.6502 24 6 0.5121 4.0263 4.9379 25 6 0.4747 3.8604 2.4406 26 6 0.8403 3.2424 1.2594 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8935 -0.5139 0.8900 32 1 3.9955 0.8310 0.6658 33 1 3.9356 2.4654 -0.0367 34 1 5.9446 1.0784 -1.1786 35 1 5.9020 -1.6976 -4.0121 36 1 4.7510 -1.6681 -2.6547 37 1 6.5008 -1.5824 -2.3398 38 1 8.6849 1.6037 -6.1043 39 1 2.6948 0.7224 2.5199 40 1 2.0505 1.8282 4.6236 41 1 -0.4213 3.5957 5.3002 42 1 1.2941 3.8776 5.6825 43 1 0.3759 5.0934 4.7622 44 1 -0.1509 4.7404 2.4184 45 1 0.5007 3.6398 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157594003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = -46.427793 kcal Electronic energy + Delta-G solvation = -22806.203004 eV Core-core repulsion = 19594.178356 eV Total energy + Delta-G solvation = -3212.024648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03207 -38.89849 -36.05554 -34.68295 -32.36942 -32.07577 -31.01900 -30.76320 -29.27662 -26.93598 -25.30928 -24.08245 -22.96985 -21.87720 -20.99173 -19.74513 -19.43139 -17.44760 -16.54995 -15.73336 -15.52238 -15.34814 -14.96679 -14.70833 -14.32576 -14.16028 -13.80292 -13.55505 -13.46422 -13.06251 -12.95295 -12.52793 -12.48448 -12.35497 -12.26249 -12.02778 -11.73553 -11.50335 -11.24154 -11.11984 -11.05702 -10.86736 -10.76516 -10.56389 -10.48303 -10.44538 -9.87158 -9.19681 -9.01534 -8.98470 -8.70157 -8.50770 -8.04340 -6.23354 -4.26873 1.26516 1.33784 3.25701 3.33558 3.34553 3.41365 3.65719 4.05259 4.32654 4.66329 4.69013 4.86685 4.90509 4.96381 5.15873 5.17088 5.20369 5.33816 5.35898 5.41805 5.50722 5.58240 5.61133 5.61719 5.68018 5.89003 5.92305 5.99797 6.06098 6.11612 6.21122 6.33107 6.35271 6.39026 6.49685 6.51818 6.60510 6.68584 6.71259 6.94886 6.96277 7.20689 7.40067 7.58710 8.15534 8.60482 8.77720 9.03460 9.39122 10.88517 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.003306 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.232606 B = 8468.201696 C = 8778.600086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.032 4.032 4 H 0.085 0.915 5 C -0.136 4.136 6 C 0.500 3.500 7 O -0.557 6.557 8 N -0.706 5.706 9 C 0.231 3.769 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.530 4.530 13 H 0.078 0.922 14 C 0.080 3.920 15 N -0.890 5.890 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.260 1.260 20 C -0.069 4.069 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.113 4.113 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.051 0.949 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 2.393 17.828 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.050 4.050 4 H 0.104 0.896 5 C -0.176 4.176 6 C 0.286 3.714 7 O -0.437 6.437 8 N -0.354 5.354 9 C 0.128 3.872 10 H 0.067 0.933 11 C -0.206 4.206 12 C -0.568 4.568 13 H 0.096 0.904 14 C -0.124 4.124 15 N -0.526 5.526 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.185 1.185 20 C -0.069 4.069 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.138 4.138 26 C -0.131 4.131 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.439 2.178 17.086 23.131 hybrid contribution -0.126 0.177 -0.441 0.492 sum -15.565 2.355 16.645 22.910 Atomic orbital electron populations 1.21714 0.96205 1.01016 1.01374 1.21713 0.95774 0.95282 1.03017 1.19955 0.93920 0.96923 0.94250 0.89634 1.21759 0.96593 1.02802 0.96419 1.20542 0.83456 0.78955 0.88450 1.90606 1.49836 1.50649 1.52621 1.46655 1.06011 1.62532 1.20179 1.19100 0.96283 0.90324 0.81485 0.93275 1.22211 0.98813 0.98640 1.00898 1.21031 0.96754 1.44709 0.94345 0.90385 1.24949 0.95424 0.93626 0.98395 1.69881 1.19552 1.45136 1.18069 0.86884 0.82309 0.79837 0.80794 1.19886 1.21228 1.18479 1.19925 0.96898 0.95192 0.94916 1.21002 1.00134 0.99889 0.91869 1.20991 0.98830 0.95879 0.98066 1.19873 0.98427 0.96337 0.95171 1.20766 1.01525 1.00110 0.94522 1.20990 1.00603 1.00149 0.92035 1.21095 0.98215 0.95611 0.98146 0.92814 0.93253 0.93263 0.89225 0.92773 0.89394 0.89232 0.77413 0.93028 0.95239 0.93498 0.92256 0.86093 0.86373 0.91457 0.91717 0.91743 0.86392 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.73 37.16 0.36 -1.38 16 2 C -0.12 -1.60 5.08 -26.73 -0.14 -1.73 16 3 C -0.03 -0.41 1.69 -91.77 -0.15 -0.57 16 4 H 0.09 1.24 7.69 -51.93 -0.40 0.84 16 5 C -0.14 -1.85 4.92 -27.88 -0.14 -1.98 16 6 C 0.50 9.25 7.47 -10.98 -0.08 9.17 16 7 O -0.56 -12.07 13.65 5.56 0.08 -11.99 16 8 N -0.71 -14.00 5.07 -54.93 -0.28 -14.28 16 9 C 0.23 5.47 2.22 -69.08 -0.15 5.32 16 10 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 11 C -0.15 -3.22 9.47 37.16 0.35 -2.87 16 12 C -0.53 -14.27 9.05 -34.44 -0.31 -14.59 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 15 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 16 Si 0.88 21.69 26.99 -169.99 -4.59 17.10 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 20 C -0.07 -0.80 3.76 -104.63 -0.39 -1.20 16 21 C -0.11 -1.19 8.71 -39.58 -0.34 -1.53 16 22 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 23 C -0.10 -0.94 5.88 -104.62 -0.62 -1.56 16 24 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 25 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 26 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 27 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 30 H 0.09 1.44 5.88 -51.93 -0.31 1.14 16 31 H 0.05 0.65 7.21 -51.93 -0.37 0.27 16 32 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 6.89 8.59 -40.82 -0.35 6.54 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.17 7.13 -52.48 -0.37 0.80 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.91 363.01 -8.51 -39.42 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.46 Total: 5.76 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.50 Total: -15.96 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.50 Total: -39.80 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.59 Total: 17.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.91 -8.51 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157594003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.011 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds