Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46912 * 2 1 4 4 H 1.08997 * 109.47214 * 304.99777 * 3 2 1 5 5 C 1.53009 * 109.46863 * 185.00189 * 3 2 1 6 6 C 1.50706 * 109.46748 * 65.00118 * 5 3 2 7 7 O 1.21281 * 120.00299 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99424 * 180.02562 * 6 5 3 9 9 C 1.46495 * 119.99388 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47981 * 34.99768 * 9 8 6 11 11 C 1.53002 * 109.46950 * 274.99377 * 9 8 6 12 12 C 1.50707 * 109.46964 * 155.00106 * 9 8 6 13 13 H 1.07997 * 120.00412 * 34.99750 * 12 9 8 14 14 C 1.37878 * 119.99902 * 215.00059 * 12 9 8 15 15 N 1.31508 * 120.00170 * 184.90962 * 14 12 9 16 16 Si 1.86807 * 119.99876 * 4.91088 * 14 12 9 17 17 H 1.48503 * 109.47044 * 84.83582 * 16 14 12 18 18 H 1.48503 * 109.47110 * 204.83208 * 16 14 12 19 19 H 1.48499 * 109.47347 * 324.83521 * 16 14 12 20 20 C 1.50695 * 109.47226 * 65.00807 * 3 2 1 21 21 C 1.38230 * 120.00487 * 59.71939 * 20 3 2 22 22 C 1.38237 * 120.00105 * 179.78971 * 21 20 3 23 23 C 1.38231 * 119.99943 * 0.44201 * 22 21 20 24 24 C 1.50706 * 120.00066 * 179.82988 * 23 22 21 25 25 C 1.38234 * 120.00210 * 359.81711 * 23 22 21 26 26 C 1.38240 * 119.99835 * 359.97144 * 25 23 22 27 27 H 1.08989 * 109.47478 * 59.99616 * 1 2 3 28 28 H 1.09000 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46306 * 299.99606 * 1 2 3 30 30 H 1.09004 * 109.46532 * 239.99902 * 2 1 3 31 31 H 1.09003 * 109.47378 * 120.00217 * 2 1 3 32 32 H 1.09000 * 109.46826 * 305.00228 * 5 3 2 33 33 H 1.08997 * 109.47164 * 184.99836 * 5 3 2 34 34 H 0.97000 * 120.00441 * 359.97438 * 8 6 5 35 35 H 1.09006 * 109.47034 * 175.03948 * 11 9 8 36 36 H 1.08993 * 109.47019 * 55.04390 * 11 9 8 37 37 H 1.09001 * 109.47478 * 295.03781 * 11 9 8 38 38 H 0.96999 * 120.00090 * 179.97438 * 15 14 12 39 39 H 1.08004 * 119.99823 * 0.02562 * 21 20 3 40 40 H 1.08005 * 119.99834 * 180.27277 * 22 21 20 41 41 H 1.08998 * 109.47074 * 269.98245 * 24 23 22 42 42 H 1.09004 * 109.46747 * 29.98350 * 24 23 22 43 43 H 1.08994 * 109.47120 * 149.97839 * 24 23 22 44 44 H 1.07995 * 120.00381 * 179.97438 * 25 23 22 45 45 H 1.07995 * 120.00259 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4674 7 8 3.1043 0.5156 -2.2460 8 7 5.2611 0.7857 -1.8015 9 6 5.6440 0.2397 -3.1058 10 1 4.9075 0.5340 -3.8534 11 6 5.7038 -1.2869 -3.0221 12 6 6.9977 0.7746 -3.4965 13 1 7.7484 0.9488 -2.7399 14 6 7.2778 1.0417 -4.8198 15 7 8.4878 1.4161 -5.1733 16 14 5.9382 0.8717 -6.1107 17 1 5.1454 2.1260 -6.1695 18 1 6.5575 0.6150 -7.4358 19 1 5.0470 -0.2610 -5.7531 20 6 1.6415 2.1162 1.2877 21 6 2.0723 1.6047 2.4975 22 6 1.7102 2.2253 3.6785 23 6 0.9099 3.3520 3.6502 24 6 0.5121 4.0263 4.9379 25 6 0.4747 3.8604 2.4406 26 6 0.8403 3.2424 1.2594 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8935 -0.5139 0.8900 32 1 3.9955 0.8310 0.6658 33 1 3.9356 2.4654 -0.0367 34 1 5.9446 1.0784 -1.1786 35 1 5.9020 -1.6976 -4.0121 36 1 4.7510 -1.6681 -2.6547 37 1 6.5008 -1.5824 -2.3398 38 1 8.6849 1.6037 -6.1043 39 1 2.6948 0.7224 2.5199 40 1 2.0505 1.8282 4.6236 41 1 -0.4213 3.5957 5.3002 42 1 1.2941 3.8776 5.6825 43 1 0.3759 5.0934 4.7622 44 1 -0.1509 4.7404 2.4184 45 1 0.5007 3.6398 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157594003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = -63.398704 kcal Electronic energy + Delta-G solvation = -22806.938917 eV Core-core repulsion = 19594.178356 eV Total energy + Delta-G solvation = -3212.760562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11650 -40.13216 -37.25990 -36.28913 -34.37219 -32.85606 -32.26528 -31.74439 -30.66101 -27.77602 -27.32454 -25.15382 -23.74978 -22.94545 -22.41604 -21.23194 -20.62398 -19.22361 -17.91862 -17.31605 -16.78076 -16.33966 -16.07591 -15.81019 -15.77592 -15.26457 -14.98321 -14.58468 -14.47662 -14.39119 -14.23838 -14.19660 -13.93183 -13.39984 -13.21751 -13.02541 -12.95736 -12.80127 -12.77557 -12.68695 -12.43002 -12.15026 -11.93698 -11.88837 -11.77775 -11.52804 -11.41431 -11.23052 -10.85135 -10.51856 -9.75224 -9.74013 -9.30002 -8.39951 -6.45761 0.48588 0.57310 1.28026 1.32415 1.43047 1.85681 2.25918 2.51770 2.90727 3.04304 3.73564 3.78764 4.06533 4.13093 4.14747 4.22877 4.26560 4.37096 4.48394 4.53672 4.55451 4.61269 4.70415 4.73556 4.83107 4.85716 4.88059 4.89433 4.97831 5.02904 5.09027 5.12190 5.20846 5.26672 5.34348 5.38035 5.40997 5.45933 5.47843 5.62787 5.77685 5.80012 5.84744 6.13283 6.20253 6.59659 6.96663 7.20841 7.53877 8.75245 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.003306 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.232606 B = 8468.201696 C = 8778.600086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.025 4.025 4 H 0.064 0.936 5 C -0.124 4.124 6 C 0.499 3.501 7 O -0.589 6.589 8 N -0.708 5.708 9 C 0.234 3.766 10 H 0.029 0.971 11 C -0.140 4.140 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.032 3.968 15 N -0.931 5.931 16 Si 0.927 3.073 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.256 1.256 20 C -0.079 4.079 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.126 4.126 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.405 0.595 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.270 0.730 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 2.453 20.014 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.083 0.917 5 C -0.163 4.163 6 C 0.287 3.713 7 O -0.471 6.471 8 N -0.357 5.357 9 C 0.130 3.870 10 H 0.047 0.953 11 C -0.199 4.199 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.168 4.168 15 N -0.570 5.570 16 Si 0.752 3.248 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.181 1.181 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.168 4.168 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.240 0.760 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.152 0.848 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.755 2.242 19.300 25.656 hybrid contribution 0.258 0.184 -1.011 1.059 sum -16.497 2.426 18.290 24.750 Atomic orbital electron populations 1.21655 0.95403 1.01477 1.01215 1.21648 0.96526 0.95231 1.02126 1.19823 0.93215 0.96754 0.94609 0.91747 1.21749 0.97258 1.03560 0.93767 1.21314 0.82259 0.77931 0.89810 1.90599 1.50538 1.51822 1.54112 1.46431 1.07198 1.62965 1.19098 1.18842 0.93825 0.91447 0.82913 0.95349 1.22097 0.99706 0.97130 1.00931 1.21230 0.97662 1.43759 0.93796 0.92558 1.25614 0.96997 0.93836 1.00385 1.69976 1.21216 1.47103 1.18683 0.86049 0.80014 0.79686 0.79027 1.20073 1.20278 1.18058 1.19745 0.98124 0.95743 0.94344 1.21152 1.00253 1.00277 0.91754 1.21278 0.98582 0.95845 0.98610 1.20240 0.97671 0.96189 0.96055 1.20815 1.02231 1.00374 0.93425 1.21228 1.00770 1.00661 0.91873 1.21216 0.98568 0.95840 0.98761 0.93817 0.92475 0.92515 0.92288 0.91256 0.86707 0.87906 0.76044 0.93637 0.94284 0.92446 0.92036 0.85106 0.84409 0.90541 0.90752 0.91014 0.84847 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.73 71.98 0.70 -2.53 16 2 C -0.12 -3.01 5.08 30.60 0.16 -2.85 16 3 C -0.03 -0.63 1.69 -11.54 -0.02 -0.65 16 4 H 0.06 1.88 7.69 -2.39 -0.02 1.86 16 5 C -0.12 -3.16 4.92 29.85 0.15 -3.02 16 6 C 0.50 18.04 7.47 87.66 0.66 18.70 16 7 O -0.59 -25.52 13.65 -3.03 -0.04 -25.56 16 8 N -0.71 -27.54 5.07 -446.09 -2.26 -29.80 16 9 C 0.23 11.02 2.22 44.25 0.10 11.12 16 10 H 0.03 1.47 4.73 -2.39 -0.01 1.46 16 11 C -0.14 -6.00 9.47 71.98 0.68 -5.32 16 12 C -0.53 -28.52 9.05 25.60 0.23 -28.29 16 13 H 0.06 3.24 8.06 -2.91 -0.02 3.21 16 14 C 0.03 1.81 5.47 84.66 0.46 2.27 16 15 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 16 Si 0.93 44.99 26.99 68.60 1.85 46.84 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -12.17 6.82 99.48 0.68 -11.49 16 20 C -0.08 -1.71 3.76 -19.87 -0.07 -1.79 16 21 C -0.12 -2.19 8.71 22.27 0.19 -2.00 16 22 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 23 C -0.10 -1.68 5.88 -19.86 -0.12 -1.79 16 24 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 25 C -0.13 -2.29 9.70 22.27 0.22 -2.08 16 26 C -0.13 -2.63 9.67 22.27 0.22 -2.41 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.22 7.38 -2.39 -0.02 1.20 16 30 H 0.06 1.89 5.88 -2.38 -0.01 1.87 16 31 H 0.07 1.53 7.21 -2.39 -0.02 1.51 16 32 H 0.11 2.35 7.58 -2.39 -0.02 2.33 16 33 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.40 13.79 8.59 -92.71 -0.80 12.99 16 35 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.13 2.13 7.13 -2.91 -0.02 2.11 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 43 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 44 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.12 2.41 7.95 -2.91 -0.02 2.39 16 Total: -1.00 -66.43 363.01 4.46 -61.96 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.14 Total: 25.04 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.48 Total: -23.03 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.96 Total: -85.26 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.85 Total: 46.84 kcal Total: -66.43 4.46 -61.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157594003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.436 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds