Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47252 * 2 1 4 4 N 1.46898 * 109.47193 * 120.00026 * 2 1 3 5 5 C 1.46899 * 111.00256 * 70.47540 * 4 2 1 6 6 C 1.50703 * 109.46797 * 64.97059 * 5 4 2 7 7 H 1.08001 * 120.00004 * 4.92779 * 6 5 4 8 8 C 1.37876 * 120.00155 * 184.92677 * 6 5 4 9 9 N 1.31519 * 119.99688 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47101 * 89.99580 * 10 8 6 12 12 H 1.48493 * 109.47089 * 209.99979 * 10 8 6 13 13 H 1.48505 * 109.46721 * 330.00008 * 10 8 6 14 14 C 1.46904 * 111.00105 * 306.52402 * 4 2 1 15 15 C 1.53000 * 109.47174 * 199.09724 * 14 4 2 16 16 H 1.09002 * 109.43793 * 307.70425 * 15 14 4 17 17 C 1.53076 * 109.43696 * 187.79267 * 15 14 4 18 18 C 1.53402 * 108.29230 * 191.74846 * 17 15 14 19 19 O 1.42828 * 108.37578 * 64.74084 * 18 17 15 20 20 C 1.35847 * 117.86200 * 310.85749 * 19 18 17 21 21 C 1.39150 * 118.49983 * 197.02279 * 20 19 18 22 22 C 1.37967 * 120.21512 * 180.17957 * 21 20 19 23 23 C 1.38290 * 119.95775 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.98526 * 359.92988 * 23 22 21 25 25 C 1.38373 * 121.80625 * 17.06815 * 20 19 18 26 26 H 1.08999 * 109.46716 * 304.84684 * 1 2 3 27 27 H 1.08994 * 109.47010 * 64.84475 * 1 2 3 28 28 H 1.09003 * 109.46770 * 184.84843 * 1 2 3 29 29 H 1.08996 * 109.47391 * 240.00010 * 2 1 3 30 30 H 1.08998 * 109.47586 * 173.93208 * 3 2 1 31 31 H 1.09002 * 109.47100 * 293.94004 * 3 2 1 32 32 H 1.09007 * 109.46774 * 53.93520 * 3 2 1 33 33 H 1.08997 * 109.47758 * 184.96731 * 5 4 2 34 34 H 1.08999 * 109.46938 * 304.97664 * 5 4 2 35 35 H 0.97001 * 119.99833 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47278 * 319.09664 * 14 4 2 37 37 H 1.09006 * 109.46995 * 79.09594 * 14 4 2 38 38 H 1.09008 * 109.69167 * 311.44387 * 17 15 14 39 39 H 1.08993 * 109.70533 * 72.00019 * 17 15 14 40 40 H 1.08998 * 109.68682 * 184.46002 * 18 17 15 41 41 H 1.09004 * 109.68634 * 305.02500 * 18 17 15 42 42 H 1.07994 * 119.88913 * 0.18902 * 21 20 19 43 43 H 1.07994 * 120.02159 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.00497 * 179.90167 * 23 22 21 45 45 H 1.08001 * 119.84262 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7631 -2.1364 1.1153 6 6 2.5644 -2.7238 -0.0178 7 1 3.2604 -2.1050 -0.5646 8 6 2.4090 -4.0513 -0.3565 9 7 1.5618 -4.8050 0.3098 10 14 3.4027 -4.7796 -1.7606 11 1 4.6813 -5.3207 -1.2336 12 1 2.6283 -5.8735 -2.3998 13 1 3.6887 -3.7234 -2.7645 14 6 1.4257 -0.1223 2.4160 15 6 2.2753 -0.5092 3.6281 16 1 2.4239 -1.5891 3.6371 17 6 1.5566 -0.0833 4.9108 18 6 2.5426 -0.2085 6.0794 19 8 3.6028 0.7267 5.8761 20 6 4.2020 0.7521 4.6572 21 6 5.4408 1.3747 4.5392 22 6 6.0794 1.4244 3.3172 23 6 5.4878 0.8535 2.2053 24 6 4.2593 0.2330 2.3190 25 6 3.6136 0.1798 3.5432 26 1 -0.3633 0.5872 0.8434 27 1 -0.3633 0.4368 -0.9302 28 1 -0.3633 -1.0240 0.0869 29 1 1.8934 -0.5138 -0.8899 30 1 3.1246 1.4445 0.1086 31 1 1.7680 1.9240 -0.9393 32 1 1.5907 1.9867 0.8308 33 1 2.0547 -2.6125 2.0515 34 1 0.7015 -2.3069 0.9362 35 1 1.4527 -5.7390 0.0718 36 1 1.3906 0.9636 2.3286 37 1 0.4146 -0.5094 2.5424 38 1 1.2243 0.9508 4.8196 39 1 0.6974 -0.7314 5.0831 40 1 2.0317 0.0136 7.0162 41 1 2.9468 -1.2203 6.1119 42 1 5.9040 1.8204 5.4071 43 1 7.0409 1.9080 3.2293 44 1 5.9862 0.8933 1.2479 45 1 3.7996 -0.2124 1.4492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162733403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -12.694666 kcal Electronic energy + Delta-G solvation = -24431.645550 eV Core-core repulsion = 21221.083681 eV Total energy + Delta-G solvation = -3210.561870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47862 -38.05144 -36.98523 -34.41275 -32.82358 -30.82742 -30.12358 -29.74308 -27.85181 -26.62979 -25.66598 -23.51154 -22.88636 -22.15719 -21.50271 -19.52503 -18.79119 -17.22523 -16.49752 -16.11532 -15.79820 -15.27667 -14.75639 -14.50852 -14.34991 -14.07785 -13.80978 -13.33193 -13.06280 -12.86530 -12.66765 -12.41731 -12.28512 -12.09334 -11.94084 -11.43000 -11.34091 -11.10474 -11.03104 -10.97054 -10.80741 -10.70360 -10.59586 -10.50891 -10.17710 -10.04616 -9.93159 -9.71129 -9.16401 -8.45380 -8.23734 -7.74565 -7.14575 -6.06394 -4.07351 1.80511 1.94155 3.29875 3.36518 3.39129 3.56357 4.23792 4.39181 4.68366 4.91279 5.01710 5.12722 5.27103 5.29669 5.37862 5.45078 5.53161 5.60720 5.69434 5.74570 5.80842 5.86286 5.92866 6.01459 6.02781 6.06723 6.10069 6.14413 6.25814 6.29747 6.34522 6.49601 6.61904 6.63020 6.76145 6.77947 6.86195 7.13266 7.20911 7.27928 7.35048 7.50541 7.76489 7.84308 8.06177 8.14188 8.48801 9.00327 9.57131 11.04247 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.005461 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.422442 B = 5126.360354 C = 5272.843987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 C -0.144 4.144 4 N -0.524 5.524 5 C 0.187 3.813 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.063 3.937 15 C -0.044 4.044 16 H 0.090 0.910 17 C -0.154 4.154 18 C 0.064 3.936 19 O -0.325 6.325 20 C 0.119 3.881 21 C -0.169 4.169 22 C -0.097 4.097 23 C -0.166 4.166 24 C -0.074 4.074 25 C -0.142 4.142 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.028 0.972 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 11.469 6.757 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 C -0.202 4.202 4 N -0.247 5.247 5 C 0.062 3.938 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.065 4.065 15 C -0.062 4.062 16 H 0.108 0.892 17 C -0.192 4.192 18 C -0.011 4.011 19 O -0.239 6.239 20 C 0.074 3.926 21 C -0.187 4.187 22 C -0.115 4.115 23 C -0.184 4.184 24 C -0.092 4.092 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.693 11.456 6.948 13.504 hybrid contribution -0.495 -0.849 -0.762 1.244 sum 1.198 10.606 6.185 12.336 Atomic orbital electron populations 1.22411 0.98627 1.02186 1.00529 1.21626 0.92001 0.93842 0.95529 1.21939 1.01798 0.96223 1.00224 1.62216 1.55673 1.06837 0.99967 1.19824 0.95664 0.80762 0.97560 1.21134 1.22909 0.94787 1.15734 0.91863 1.24956 0.95458 0.97185 0.96798 1.69952 1.35879 1.07015 1.40859 0.86559 0.80060 0.78830 0.82349 1.20673 1.21415 1.19835 1.22033 0.95008 0.99099 0.90392 1.20094 0.91613 1.00634 0.93893 0.89199 1.22255 0.98836 1.02832 0.95276 1.22888 0.87039 0.92496 0.98686 1.85912 1.49421 1.57941 1.30644 1.18810 0.92059 0.97743 0.83945 1.20355 0.93837 1.06098 0.98430 1.20853 0.99070 0.99207 0.92396 1.21166 0.97189 1.01821 0.98255 1.22729 0.92919 0.93715 0.99849 1.19777 0.97585 1.03713 0.93174 0.93719 0.93331 0.91814 0.88675 0.91964 0.93298 0.93608 0.95395 0.98063 0.92974 0.91623 0.94897 0.90850 0.90062 0.88094 0.91952 0.86419 0.86587 0.86632 0.79471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.45 37.16 0.31 -2.66 16 2 C 0.08 1.39 2.77 -67.71 -0.19 1.20 16 3 C -0.14 -2.15 8.92 37.16 0.33 -1.82 16 4 N -0.52 -10.02 1.11 -228.08 -0.25 -10.27 16 5 C 0.19 4.45 4.43 -4.97 -0.02 4.43 16 6 C -0.51 -13.31 8.24 -34.44 -0.28 -13.60 16 7 H 0.06 1.64 7.31 -52.49 -0.38 1.26 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 10 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.06 1.06 2.73 -3.82 -0.01 1.05 16 15 C -0.04 -0.72 2.50 -91.70 -0.23 -0.95 16 16 H 0.09 1.68 6.57 -51.93 -0.34 1.34 16 17 C -0.15 -2.04 5.49 -26.48 -0.15 -2.18 16 18 C 0.06 0.81 7.03 37.37 0.26 1.07 16 19 O -0.32 -5.01 10.27 -19.26 -0.20 -5.21 16 20 C 0.12 1.97 6.47 -39.19 -0.25 1.71 16 21 C -0.17 -2.57 9.94 -39.34 -0.39 -2.96 16 22 C -0.10 -1.40 10.04 -39.66 -0.40 -1.80 16 23 C -0.17 -2.63 10.04 -39.61 -0.40 -3.02 16 24 C -0.07 -1.32 8.56 -39.53 -0.34 -1.65 16 25 C -0.14 -2.44 5.42 -104.44 -0.57 -3.00 16 26 H 0.04 0.68 7.03 -51.93 -0.36 0.32 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.22 6.44 -51.93 -0.33 0.88 16 29 H 0.10 1.90 6.66 -51.93 -0.35 1.56 16 30 H 0.06 0.95 7.21 -51.93 -0.37 0.57 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.65 6.52 -51.93 -0.34 0.32 16 33 H 0.03 0.72 6.52 -51.93 -0.34 0.38 16 34 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.05 5.99 -51.93 -0.31 0.74 16 37 H 0.03 0.56 7.38 -51.93 -0.38 0.18 16 38 H 0.07 0.95 8.10 -51.92 -0.42 0.53 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.19 3.62 4.21 -52.49 -0.22 3.40 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -28.22 341.53 -9.01 -37.23 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.01 Total: 4.76 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.41 Total: -22.72 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.48 Total: -35.27 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.22 -9.01 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162733403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.535 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds