Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47252 * 2 1 4 4 N 1.46898 * 109.47193 * 120.00026 * 2 1 3 5 5 C 1.46899 * 111.00256 * 70.47540 * 4 2 1 6 6 C 1.50703 * 109.46797 * 64.97059 * 5 4 2 7 7 H 1.08001 * 120.00004 * 4.92779 * 6 5 4 8 8 C 1.37876 * 120.00155 * 184.92677 * 6 5 4 9 9 N 1.31519 * 119.99688 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47101 * 89.99580 * 10 8 6 12 12 H 1.48493 * 109.47089 * 209.99979 * 10 8 6 13 13 H 1.48505 * 109.46721 * 330.00008 * 10 8 6 14 14 C 1.46904 * 111.00105 * 306.52402 * 4 2 1 15 15 C 1.53000 * 109.47174 * 199.09724 * 14 4 2 16 16 H 1.09002 * 109.43793 * 307.70425 * 15 14 4 17 17 C 1.53076 * 109.43696 * 187.79267 * 15 14 4 18 18 C 1.53402 * 108.29230 * 191.74846 * 17 15 14 19 19 O 1.42828 * 108.37578 * 64.74084 * 18 17 15 20 20 C 1.35847 * 117.86200 * 310.85749 * 19 18 17 21 21 C 1.39150 * 118.49983 * 197.02279 * 20 19 18 22 22 C 1.37967 * 120.21512 * 180.17957 * 21 20 19 23 23 C 1.38290 * 119.95775 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.98526 * 359.92988 * 23 22 21 25 25 C 1.38373 * 121.80625 * 17.06815 * 20 19 18 26 26 H 1.08999 * 109.46716 * 304.84684 * 1 2 3 27 27 H 1.08994 * 109.47010 * 64.84475 * 1 2 3 28 28 H 1.09003 * 109.46770 * 184.84843 * 1 2 3 29 29 H 1.08996 * 109.47391 * 240.00010 * 2 1 3 30 30 H 1.08998 * 109.47586 * 173.93208 * 3 2 1 31 31 H 1.09002 * 109.47100 * 293.94004 * 3 2 1 32 32 H 1.09007 * 109.46774 * 53.93520 * 3 2 1 33 33 H 1.08997 * 109.47758 * 184.96731 * 5 4 2 34 34 H 1.08999 * 109.46938 * 304.97664 * 5 4 2 35 35 H 0.97001 * 119.99833 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47278 * 319.09664 * 14 4 2 37 37 H 1.09006 * 109.46995 * 79.09594 * 14 4 2 38 38 H 1.09008 * 109.69167 * 311.44387 * 17 15 14 39 39 H 1.08993 * 109.70533 * 72.00019 * 17 15 14 40 40 H 1.08998 * 109.68682 * 184.46002 * 18 17 15 41 41 H 1.09004 * 109.68634 * 305.02500 * 18 17 15 42 42 H 1.07994 * 119.88913 * 0.18902 * 21 20 19 43 43 H 1.07994 * 120.02159 * 180.02562 * 22 21 20 44 44 H 1.08006 * 120.00497 * 179.90167 * 23 22 21 45 45 H 1.08001 * 119.84262 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7631 -2.1364 1.1153 6 6 2.5644 -2.7238 -0.0178 7 1 3.2604 -2.1050 -0.5646 8 6 2.4090 -4.0513 -0.3565 9 7 1.5618 -4.8050 0.3098 10 14 3.4027 -4.7796 -1.7606 11 1 4.6813 -5.3207 -1.2336 12 1 2.6283 -5.8735 -2.3998 13 1 3.6887 -3.7234 -2.7645 14 6 1.4257 -0.1223 2.4160 15 6 2.2753 -0.5092 3.6281 16 1 2.4239 -1.5891 3.6371 17 6 1.5566 -0.0833 4.9108 18 6 2.5426 -0.2085 6.0794 19 8 3.6028 0.7267 5.8761 20 6 4.2020 0.7521 4.6572 21 6 5.4408 1.3747 4.5392 22 6 6.0794 1.4244 3.3172 23 6 5.4878 0.8535 2.2053 24 6 4.2593 0.2330 2.3190 25 6 3.6136 0.1798 3.5432 26 1 -0.3633 0.5872 0.8434 27 1 -0.3633 0.4368 -0.9302 28 1 -0.3633 -1.0240 0.0869 29 1 1.8934 -0.5138 -0.8899 30 1 3.1246 1.4445 0.1086 31 1 1.7680 1.9240 -0.9393 32 1 1.5907 1.9867 0.8308 33 1 2.0547 -2.6125 2.0515 34 1 0.7015 -2.3069 0.9362 35 1 1.4527 -5.7390 0.0718 36 1 1.3906 0.9636 2.3286 37 1 0.4146 -0.5094 2.5424 38 1 1.2243 0.9508 4.8196 39 1 0.6974 -0.7314 5.0831 40 1 2.0317 0.0136 7.0162 41 1 2.9468 -1.2203 6.1119 42 1 5.9040 1.8204 5.4071 43 1 7.0409 1.9080 3.2293 44 1 5.9862 0.8933 1.2479 45 1 3.7996 -0.2124 1.4492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162733403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -25.840629 kcal Electronic energy + Delta-G solvation = -24432.215602 eV Core-core repulsion = 21221.083681 eV Total energy + Delta-G solvation = -3211.131921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69355 -39.51641 -38.17084 -35.69904 -34.83641 -32.29116 -31.36705 -30.96564 -29.49191 -27.96758 -27.23949 -24.81315 -24.31523 -23.78031 -22.76823 -20.71898 -20.29198 -18.57763 -18.21152 -17.49841 -16.99461 -16.84441 -16.31211 -15.96903 -15.73018 -15.52578 -15.10119 -14.68637 -14.39034 -14.26552 -13.97388 -13.93271 -13.68142 -13.44732 -13.19278 -13.11924 -12.72905 -12.69794 -12.51701 -12.37235 -12.30460 -12.20401 -12.07070 -11.81863 -11.69478 -11.47794 -11.31038 -11.28531 -10.97522 -10.55422 -9.49609 -8.97400 -8.71945 -8.17000 -6.24612 0.58604 0.69670 1.40894 1.41845 1.51952 2.41236 2.46427 3.00036 3.16736 3.26289 3.77503 3.81431 3.92376 4.08327 4.15436 4.29455 4.33370 4.37951 4.41864 4.55142 4.61127 4.63347 4.67694 4.75374 4.77955 4.83176 4.85143 4.90213 4.93013 5.03341 5.08829 5.13915 5.27400 5.29621 5.31091 5.41211 5.50029 5.56065 5.60192 5.71742 5.91564 5.96678 6.11231 6.19045 6.41710 6.63430 6.70040 6.92772 7.44327 8.93566 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.005461 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.422442 B = 5126.360354 C = 5272.843987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 C -0.132 4.132 4 N -0.520 5.520 5 C 0.207 3.793 6 C -0.513 4.513 7 H 0.063 0.937 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.958 3.042 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.263 1.263 14 C 0.069 3.931 15 C -0.043 4.043 16 H 0.055 0.945 17 C -0.147 4.147 18 C 0.061 3.939 19 O -0.330 6.330 20 C 0.108 3.892 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.174 4.174 24 C -0.096 4.096 25 C -0.158 4.158 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.000 1.000 34 H -0.026 1.026 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.056 0.944 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 13.562 7.084 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.034 4.034 3 C -0.189 4.189 4 N -0.242 5.242 5 C 0.081 3.919 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.187 1.187 14 C -0.059 4.059 15 C -0.062 4.062 16 H 0.074 0.926 17 C -0.185 4.185 18 C -0.014 4.014 19 O -0.245 6.245 20 C 0.064 3.936 21 C -0.191 4.191 22 C -0.107 4.107 23 C -0.192 4.192 24 C -0.114 4.114 25 C -0.159 4.159 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.018 0.982 34 H -0.009 1.009 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.155 0.845 41 H 0.074 0.926 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.146 0.854 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.641 13.571 7.274 15.622 hybrid contribution -0.774 -1.464 -0.827 1.851 sum 1.867 12.108 6.446 13.843 Atomic orbital electron populations 1.22314 0.97742 1.00526 1.02329 1.21674 0.92753 0.95264 0.93712 1.21820 1.01411 0.93888 1.01791 1.62192 1.56196 1.04256 1.01595 1.19388 0.93379 0.83768 0.95369 1.21447 1.22666 0.95012 1.16018 0.91923 1.25783 0.96520 0.97740 0.99292 1.70079 1.37555 1.07267 1.42588 0.85544 0.78449 0.78126 0.79498 1.20378 1.21161 1.18718 1.22039 0.94610 0.99606 0.89602 1.20031 0.92200 0.98558 0.95396 0.92641 1.22229 0.99073 1.03467 0.93747 1.23124 0.86394 0.91969 0.99878 1.85906 1.50041 1.58514 1.30008 1.19011 0.92704 0.97858 0.84072 1.20718 0.93391 1.05500 0.99525 1.21197 1.00005 0.98088 0.91431 1.21364 0.96628 1.01629 0.99555 1.22602 0.94202 0.95064 0.99501 1.19833 0.97935 1.04519 0.93573 0.92088 0.91295 0.95131 0.91407 0.92423 0.91139 0.92631 0.98192 1.00863 0.92998 0.90025 0.95444 0.89944 0.88745 0.84492 0.92586 0.84370 0.83255 0.85371 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 8.45 71.98 0.61 -5.05 16 2 C 0.07 2.65 2.77 44.92 0.12 2.78 16 3 C -0.13 -3.72 8.92 71.98 0.64 -3.08 16 4 N -0.52 -20.59 1.11 -875.51 -0.98 -21.57 16 5 C 0.21 10.45 4.43 85.56 0.38 10.83 16 6 C -0.51 -27.97 8.24 25.60 0.21 -27.76 16 7 H 0.06 3.35 7.31 -2.91 -0.02 3.33 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 10 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.07 2.37 2.73 86.30 0.24 2.61 16 15 C -0.04 -1.45 2.50 -11.49 -0.03 -1.48 16 16 H 0.06 2.23 6.57 -2.39 -0.02 2.21 16 17 C -0.15 -3.75 5.49 30.75 0.17 -3.59 16 18 C 0.06 1.45 7.03 72.12 0.51 1.95 16 19 O -0.33 -9.60 10.27 -91.83 -0.94 -10.54 16 20 C 0.11 3.44 6.47 22.52 0.15 3.59 16 21 C -0.17 -4.87 9.94 22.42 0.22 -4.64 16 22 C -0.09 -2.35 10.04 22.22 0.22 -2.13 16 23 C -0.17 -5.27 10.04 22.25 0.22 -5.05 16 24 C -0.10 -3.39 8.56 22.30 0.19 -3.20 16 25 C -0.16 -5.42 5.42 -19.75 -0.11 -5.53 16 26 H 0.06 1.80 7.03 -2.39 -0.02 1.78 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.03 1.20 6.44 -2.39 -0.02 1.18 16 29 H 0.07 2.78 6.66 -2.39 -0.02 2.77 16 30 H 0.06 1.69 7.21 -2.39 -0.02 1.67 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.46 6.52 -2.38 -0.02 1.45 16 33 H 0.00 0.00 6.52 -2.39 -0.02 -0.01 16 34 H -0.03 -1.46 6.38 -2.39 -0.02 -1.47 16 35 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.08 2.53 5.99 -2.39 -0.01 2.52 16 37 H 0.03 0.96 7.38 -2.38 -0.02 0.94 16 38 H 0.08 1.97 8.10 -2.38 -0.02 1.95 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.17 6.63 4.21 -2.91 -0.01 6.61 16 Total: -1.00 -62.98 341.53 5.57 -57.41 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.97 Total: 22.93 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.21 Total: -39.04 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -0.69 Total: -76.77 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.94 Total: -10.54 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.98 5.57 -57.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162733403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.567 kcal (2) G-P(sol) polarization free energy of solvation -62.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds