Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 H 1.09007 * 109.47320 * 305.52849 * 3 2 1 5 5 C 1.50696 * 109.47274 * 185.52273 * 3 2 1 6 6 H 1.07998 * 120.00514 * 245.60050 * 5 3 2 7 7 C 1.37880 * 119.99909 * 65.60608 * 5 3 2 8 8 N 1.31511 * 119.99949 * 196.23951 * 7 5 3 9 9 Si 1.86798 * 119.99942 * 16.22903 * 7 5 3 10 10 H 1.48505 * 109.47232 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47549 * 300.00263 * 9 7 5 12 12 H 1.48506 * 109.47024 * 60.00714 * 9 7 5 13 13 N 1.46501 * 109.46910 * 65.52195 * 3 2 1 14 14 C 1.34776 * 120.00460 * 275.00174 * 13 3 2 15 15 O 1.21283 * 119.99907 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00175 * 180.02562 * 14 13 3 17 17 C 1.50697 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.38239 * 119.99617 * 269.72119 * 17 16 14 19 19 C 1.50699 * 120.00116 * 0.02562 * 18 17 16 20 20 C 1.38235 * 119.99677 * 179.78717 * 18 17 16 21 21 C 1.38232 * 120.00112 * 0.45089 * 20 18 17 22 22 C 1.50703 * 120.00164 * 179.83139 * 21 20 18 23 23 C 1.38241 * 119.99947 * 359.80355 * 21 20 18 24 24 C 1.38225 * 120.00268 * 90.00245 * 17 16 14 25 25 C 1.50702 * 119.99923 * 359.97356 * 24 17 16 26 26 H 1.08994 * 109.47243 * 59.99771 * 1 2 3 27 27 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46385 * 299.99204 * 1 2 3 29 29 H 1.09005 * 109.46876 * 240.00759 * 2 1 3 30 30 H 1.08994 * 109.47243 * 120.00229 * 2 1 3 31 31 H 0.96999 * 120.00044 * 354.84722 * 8 7 5 32 32 H 0.97003 * 119.99990 * 95.00211 * 13 3 2 33 33 H 1.08999 * 109.46780 * 299.99922 * 16 14 13 34 34 H 1.08997 * 109.46882 * 59.99541 * 16 14 13 35 35 H 1.09003 * 109.47406 * 89.99818 * 19 18 17 36 36 H 1.08997 * 109.47188 * 209.99687 * 19 18 17 37 37 H 1.09001 * 109.47161 * 329.99429 * 19 18 17 38 38 H 1.08007 * 119.99920 * 180.27787 * 20 18 17 39 39 H 1.08997 * 109.46815 * 269.97346 * 22 21 20 40 40 H 1.09000 * 109.47029 * 29.97779 * 22 21 20 41 41 H 1.09003 * 109.46806 * 149.97447 * 22 21 20 42 42 H 1.08001 * 119.99925 * 180.02562 * 23 21 20 43 43 H 1.09003 * 109.47204 * 90.00636 * 25 24 17 44 44 H 1.09006 * 109.46899 * 210.00200 * 25 24 17 45 45 H 1.08998 * 109.47182 * 330.00649 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9842 -0.8364 5 6 3.5408 1.4448 -0.1367 6 1 4.1565 1.8044 0.6744 7 6 4.1280 0.9878 -1.2975 8 7 5.4081 0.6868 -1.3126 9 14 3.1051 0.7958 -2.8487 10 1 3.9650 0.2916 -3.9495 11 1 2.0042 -0.1691 -2.5996 12 1 2.5328 2.1120 -3.2303 13 7 1.6632 2.0936 1.2571 14 6 0.4470 2.6601 1.3845 15 8 -0.3355 2.6313 0.4583 16 6 0.0596 3.3304 2.6775 17 6 -1.3394 3.8780 2.5600 18 6 -1.5408 5.1680 2.1058 19 6 -0.3613 6.0265 1.7277 20 6 -2.8243 5.6688 1.9938 21 6 -3.9060 4.8829 2.3447 22 6 -5.3051 5.4302 2.2262 23 6 -3.7043 3.5946 2.8039 24 6 -2.4210 3.0924 2.9118 25 6 -2.2011 1.6881 3.4123 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 5.9554 0.8564 -0.5299 32 1 2.2891 2.1170 1.9978 33 1 0.0980 2.6038 3.4891 34 1 0.7529 4.1452 2.8862 35 1 -0.1326 5.8849 0.6713 36 1 -0.6010 7.0740 1.9103 37 1 0.5028 5.7415 2.3279 38 1 -2.9819 6.6752 1.6346 39 1 -5.5862 5.9144 3.1614 40 1 -5.3435 6.1569 1.4148 41 1 -5.9976 4.6148 2.0168 42 1 -4.5494 2.9805 3.0777 43 1 -2.0907 1.7019 4.4967 44 1 -3.0559 1.0680 3.1420 45 1 -1.2977 1.2785 2.9604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166269447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -40.891829 kcal Electronic energy + Delta-G solvation = -23655.537585 eV Core-core repulsion = 20443.752995 eV Total energy + Delta-G solvation = -3211.784590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17523 -38.70376 -35.33385 -34.10388 -33.51720 -32.41708 -31.53085 -29.59913 -27.90702 -27.19571 -26.65750 -24.99857 -22.32637 -20.97947 -20.70613 -19.74399 -19.42921 -17.76711 -16.38919 -16.21402 -15.89564 -15.17331 -14.59128 -14.27245 -14.10570 -13.69644 -13.28508 -13.20762 -13.10275 -12.97038 -12.82693 -12.71928 -12.57749 -12.48392 -12.40583 -12.23887 -11.90444 -11.66688 -11.32912 -11.12008 -10.92109 -10.74997 -10.72777 -10.66047 -10.42242 -9.87985 -9.56203 -9.17112 -9.00589 -8.42183 -8.34261 -8.24653 -8.03515 -6.57504 -4.21582 1.43639 1.50361 3.31563 3.39034 3.44789 3.59364 3.69500 4.22045 4.41999 4.73554 4.78701 4.87751 5.02071 5.14566 5.17326 5.31190 5.38887 5.47617 5.48887 5.50168 5.53426 5.61091 5.69861 5.74530 5.79504 5.83210 5.93283 5.99800 6.10211 6.11790 6.28542 6.30368 6.35372 6.60894 6.64384 6.71644 6.80424 6.81868 6.98437 7.07572 7.15526 7.38539 7.45967 7.68007 8.23726 8.52734 8.72446 9.05153 9.47575 10.82947 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.004208 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.042166 B = 6652.954437 C = 6870.709904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.540 6.540 16 C -0.113 4.113 17 C -0.060 4.060 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.064 4.064 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.391 0.609 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 7.288 10.682 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.418 6.418 16 C -0.153 4.153 17 C -0.061 4.061 18 C -0.063 4.063 19 C -0.175 4.175 20 C -0.146 4.146 21 C -0.087 4.087 22 C -0.167 4.167 23 C -0.146 4.146 24 C -0.064 4.064 25 C -0.173 4.173 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.529 6.727 8.415 19.730 hybrid contribution 0.358 0.526 1.991 2.090 sum -16.171 7.253 10.406 20.552 Atomic orbital electron populations 1.21887 0.97374 0.98736 1.02015 1.22358 0.93784 0.99886 1.01732 1.19009 0.95640 0.88477 0.82414 0.94211 1.22107 0.89811 1.49372 1.04073 0.92105 1.25666 0.97525 0.92390 1.01186 1.70877 1.07081 1.41041 1.34279 0.84119 0.75487 0.77722 0.75902 1.20953 1.19509 1.20662 1.46263 1.14660 1.56395 1.18023 1.20254 0.82564 0.79308 0.88991 1.90681 1.50773 1.59324 1.40981 1.20817 0.95080 1.01500 0.97856 1.18971 0.93542 0.93381 1.00180 1.19653 0.94895 0.94176 0.97607 1.20868 0.95853 0.98278 1.02493 1.20763 0.91593 0.99693 1.02510 1.19787 0.95340 0.94328 0.99221 1.20747 0.93050 1.01037 1.01892 1.20762 0.96135 0.95385 1.02328 1.19629 0.92640 0.95669 0.98436 1.20833 1.03008 0.92892 1.00593 0.93093 0.95220 0.93203 0.91414 0.93171 0.92145 0.77617 0.88643 0.88344 0.90677 0.91820 0.91381 0.86476 0.91519 0.91759 0.91774 0.86507 0.91352 0.91603 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.53 37.16 0.32 -2.60 16 2 C -0.14 -3.11 5.28 -26.73 -0.14 -3.25 16 3 C 0.25 5.89 1.82 -69.08 -0.13 5.76 16 4 H 0.04 1.04 6.26 -51.92 -0.32 0.72 16 5 C -0.62 -16.56 9.01 -34.44 -0.31 -16.87 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.09 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -26.78 13.70 55.43 0.76 -26.02 16 9 Si 1.04 25.28 26.27 -169.99 -4.47 20.82 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.13 5.66 56.52 0.32 -5.81 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.71 -13.94 5.03 -54.93 -0.28 -14.21 16 14 C 0.50 9.34 6.01 -10.98 -0.07 9.28 16 15 O -0.54 -11.85 13.18 5.56 0.07 -11.77 16 16 C -0.11 -1.59 4.75 -29.04 -0.14 -1.73 16 17 C -0.06 -0.89 4.37 -104.63 -0.46 -1.35 16 18 C -0.06 -0.90 5.88 -104.62 -0.62 -1.51 16 19 C -0.12 -1.49 9.60 36.01 0.35 -1.14 16 20 C -0.13 -1.66 9.36 -39.58 -0.37 -2.03 16 21 C -0.09 -1.07 5.88 -104.62 -0.62 -1.69 16 22 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 23 C -0.13 -1.65 9.36 -39.58 -0.37 -2.02 16 24 C -0.06 -0.89 5.88 -104.63 -0.62 -1.50 16 25 C -0.12 -1.41 9.19 36.01 0.33 -1.08 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.99 5.62 -51.93 -0.29 0.70 16 29 H 0.07 1.59 4.73 -51.93 -0.25 1.35 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 32 H 0.39 6.88 8.53 -40.82 -0.35 6.53 16 33 H 0.10 1.15 6.70 -51.93 -0.35 0.80 16 34 H 0.10 1.22 5.94 -51.93 -0.31 0.91 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.07 0.80 5.94 -51.93 -0.31 0.49 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 45 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -31.63 352.09 -8.37 -40.00 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.20 Total: 7.26 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.57 Total: -21.38 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.48 Total: -40.23 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.47 Total: 20.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.63 -8.37 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166269447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.889 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds