Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 H 1.09007 * 109.47320 * 305.52849 * 3 2 1 5 5 C 1.50696 * 109.47274 * 185.52273 * 3 2 1 6 6 H 1.07998 * 120.00514 * 245.60050 * 5 3 2 7 7 C 1.37880 * 119.99909 * 65.60608 * 5 3 2 8 8 N 1.31511 * 119.99949 * 196.23951 * 7 5 3 9 9 Si 1.86798 * 119.99942 * 16.22903 * 7 5 3 10 10 H 1.48505 * 109.47232 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47549 * 300.00263 * 9 7 5 12 12 H 1.48506 * 109.47024 * 60.00714 * 9 7 5 13 13 N 1.46501 * 109.46910 * 65.52195 * 3 2 1 14 14 C 1.34776 * 120.00460 * 275.00174 * 13 3 2 15 15 O 1.21283 * 119.99907 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00175 * 180.02562 * 14 13 3 17 17 C 1.50697 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.38239 * 119.99617 * 269.72119 * 17 16 14 19 19 C 1.50699 * 120.00116 * 0.02562 * 18 17 16 20 20 C 1.38235 * 119.99677 * 179.78717 * 18 17 16 21 21 C 1.38232 * 120.00112 * 0.45089 * 20 18 17 22 22 C 1.50703 * 120.00164 * 179.83139 * 21 20 18 23 23 C 1.38241 * 119.99947 * 359.80355 * 21 20 18 24 24 C 1.38225 * 120.00268 * 90.00245 * 17 16 14 25 25 C 1.50702 * 119.99923 * 359.97356 * 24 17 16 26 26 H 1.08994 * 109.47243 * 59.99771 * 1 2 3 27 27 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46385 * 299.99204 * 1 2 3 29 29 H 1.09005 * 109.46876 * 240.00759 * 2 1 3 30 30 H 1.08994 * 109.47243 * 120.00229 * 2 1 3 31 31 H 0.96999 * 120.00044 * 354.84722 * 8 7 5 32 32 H 0.97003 * 119.99990 * 95.00211 * 13 3 2 33 33 H 1.08999 * 109.46780 * 299.99922 * 16 14 13 34 34 H 1.08997 * 109.46882 * 59.99541 * 16 14 13 35 35 H 1.09003 * 109.47406 * 89.99818 * 19 18 17 36 36 H 1.08997 * 109.47188 * 209.99687 * 19 18 17 37 37 H 1.09001 * 109.47161 * 329.99429 * 19 18 17 38 38 H 1.08007 * 119.99920 * 180.27787 * 20 18 17 39 39 H 1.08997 * 109.46815 * 269.97346 * 22 21 20 40 40 H 1.09000 * 109.47029 * 29.97779 * 22 21 20 41 41 H 1.09003 * 109.46806 * 149.97447 * 22 21 20 42 42 H 1.08001 * 119.99925 * 180.02562 * 23 21 20 43 43 H 1.09003 * 109.47204 * 90.00636 * 25 24 17 44 44 H 1.09006 * 109.46899 * 210.00200 * 25 24 17 45 45 H 1.08998 * 109.47182 * 330.00649 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9842 -0.8364 5 6 3.5408 1.4448 -0.1367 6 1 4.1565 1.8044 0.6744 7 6 4.1280 0.9878 -1.2975 8 7 5.4081 0.6868 -1.3126 9 14 3.1051 0.7958 -2.8487 10 1 3.9650 0.2916 -3.9495 11 1 2.0042 -0.1691 -2.5996 12 1 2.5328 2.1120 -3.2303 13 7 1.6632 2.0936 1.2571 14 6 0.4470 2.6601 1.3845 15 8 -0.3355 2.6313 0.4583 16 6 0.0596 3.3304 2.6775 17 6 -1.3394 3.8780 2.5600 18 6 -1.5408 5.1680 2.1058 19 6 -0.3613 6.0265 1.7277 20 6 -2.8243 5.6688 1.9938 21 6 -3.9060 4.8829 2.3447 22 6 -5.3051 5.4302 2.2262 23 6 -3.7043 3.5946 2.8039 24 6 -2.4210 3.0924 2.9118 25 6 -2.2011 1.6881 3.4123 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 5.9554 0.8564 -0.5299 32 1 2.2891 2.1170 1.9978 33 1 0.0980 2.6038 3.4891 34 1 0.7529 4.1452 2.8862 35 1 -0.1326 5.8849 0.6713 36 1 -0.6010 7.0740 1.9103 37 1 0.5028 5.7415 2.3279 38 1 -2.9819 6.6752 1.6346 39 1 -5.5862 5.9144 3.1614 40 1 -5.3435 6.1569 1.4148 41 1 -5.9976 4.6148 2.0168 42 1 -4.5494 2.9805 3.0777 43 1 -2.0907 1.7019 4.4967 44 1 -3.0559 1.0680 3.1420 45 1 -1.2977 1.2785 2.9604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166269447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -59.225814 kcal Electronic energy + Delta-G solvation = -23656.332606 eV Core-core repulsion = 20443.752995 eV Total energy + Delta-G solvation = -3212.579612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35661 -40.06569 -37.06708 -35.16131 -34.48041 -34.43966 -33.20191 -30.74394 -29.01096 -28.80764 -27.60104 -26.10318 -24.23227 -22.49424 -21.67463 -21.24159 -20.78947 -19.72933 -17.81219 -17.44611 -17.24557 -16.58662 -16.01939 -15.55909 -15.22190 -15.11663 -14.70255 -14.55982 -14.36531 -14.25602 -14.04971 -13.91841 -13.82144 -13.73212 -13.56238 -13.48605 -13.37678 -12.74225 -12.68333 -12.49842 -12.41339 -12.26263 -12.05089 -11.79459 -11.72670 -11.69200 -11.38370 -11.10458 -10.67532 -10.48884 -9.75136 -9.39955 -9.25734 -8.79050 -6.44314 0.43839 0.51772 1.43241 1.47785 1.67129 1.85738 2.39337 2.50187 2.92506 3.00609 3.71210 3.86052 3.99352 4.02932 4.17309 4.19506 4.31724 4.39736 4.40785 4.47629 4.55425 4.58021 4.62193 4.70568 4.77233 4.79227 4.81287 4.86357 4.87036 5.00475 5.03096 5.09567 5.10956 5.22770 5.30641 5.39184 5.41167 5.55569 5.63395 5.70246 5.70907 5.71728 5.80633 6.01559 6.20570 6.54144 6.92413 7.29256 7.53576 8.59829 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.004208 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.042166 B = 6652.954437 C = 6870.709904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 C 0.254 3.746 4 H 0.018 0.982 5 C -0.611 4.611 6 H 0.041 0.959 7 C -0.005 4.005 8 N -0.930 5.930 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.245 1.245 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.507 3.493 15 O -0.573 6.573 16 C -0.101 4.101 17 C -0.086 4.086 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.090 4.090 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.077 4.077 25 C -0.114 4.114 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.258 0.742 32 H 0.402 0.598 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.428 7.519 11.762 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.149 3.851 4 H 0.035 0.965 5 C -0.649 4.649 6 H 0.059 0.941 7 C -0.205 4.205 8 N -0.565 5.565 9 Si 0.893 3.107 10 H -0.208 1.208 11 H -0.170 1.170 12 H -0.203 1.203 13 N -0.356 5.356 14 C 0.294 3.706 15 O -0.453 6.453 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.081 4.081 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.090 4.090 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.077 4.077 25 C -0.171 4.171 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.236 0.764 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.154 0.846 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.893 6.966 9.536 22.280 hybrid contribution 1.050 0.531 1.728 2.090 sum -17.843 7.496 11.264 22.393 Atomic orbital electron populations 1.21758 0.95575 1.00168 1.01406 1.22242 0.95283 0.98464 1.01407 1.18681 0.93241 0.89581 0.83630 0.96462 1.22308 0.91628 1.47825 1.03127 0.94096 1.26740 0.97693 0.92229 1.03875 1.70973 1.08033 1.43445 1.34031 0.83735 0.75173 0.78491 0.73347 1.20787 1.17006 1.20270 1.46120 1.15736 1.56715 1.17066 1.20937 0.81321 0.78237 0.90106 1.90662 1.51588 1.60382 1.42644 1.20761 0.95508 1.02157 0.95607 1.19127 0.93801 0.93994 1.01724 1.19936 0.95846 0.94471 0.97812 1.20864 0.95810 0.99555 1.01074 1.21067 0.91492 1.00723 1.02670 1.20214 0.96775 0.94169 0.97878 1.20799 0.91190 1.01525 1.03009 1.21082 0.96436 0.95990 1.02313 1.19944 0.92991 0.96403 0.98378 1.20845 1.02493 0.91923 1.01825 0.94606 0.92688 0.92928 0.92595 0.92620 0.93243 0.76374 0.86316 0.86610 0.92824 0.89672 0.90833 0.84860 0.89929 0.91081 0.90915 0.84613 0.89179 0.90845 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.53 71.98 0.61 -4.55 16 2 C -0.14 -5.90 5.28 30.60 0.16 -5.74 16 3 C 0.25 11.98 1.82 44.24 0.08 12.06 16 4 H 0.02 0.92 6.26 -2.38 -0.01 0.90 16 5 C -0.61 -33.22 9.01 25.60 0.23 -32.99 16 6 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 7 C 0.00 -0.26 5.32 84.66 0.45 0.19 16 8 N -0.93 -56.35 13.70 21.45 0.29 -56.06 16 9 Si 1.07 51.02 26.27 68.60 1.80 52.82 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.25 -10.71 5.66 99.48 0.56 -10.15 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.71 -27.52 5.03 -446.09 -2.24 -29.76 16 14 C 0.51 18.35 6.01 87.66 0.53 18.88 16 15 O -0.57 -24.92 13.18 -3.04 -0.04 -24.96 16 16 C -0.10 -2.70 4.75 29.10 0.14 -2.56 16 17 C -0.09 -2.42 4.37 -19.87 -0.09 -2.50 16 18 C -0.08 -2.19 5.88 -19.87 -0.12 -2.31 16 19 C -0.12 -2.83 9.60 71.24 0.68 -2.14 16 20 C -0.14 -3.46 9.36 22.27 0.21 -3.25 16 21 C -0.09 -2.05 5.88 -19.86 -0.12 -2.16 16 22 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 23 C -0.14 -3.32 9.36 22.27 0.21 -3.11 16 24 C -0.08 -2.01 5.88 -19.87 -0.12 -2.13 16 25 C -0.11 -2.51 9.19 71.24 0.65 -1.86 16 26 H 0.03 1.49 7.88 -2.39 -0.02 1.47 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 2.02 5.62 -2.39 -0.01 2.00 16 29 H 0.06 2.56 4.73 -2.38 -0.01 2.55 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16 32 H 0.40 13.84 8.53 -92.71 -0.79 13.05 16 33 H 0.12 2.59 6.70 -2.39 -0.02 2.57 16 34 H 0.12 2.66 5.94 -2.39 -0.01 2.64 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 37 H 0.07 1.64 5.94 -2.39 -0.01 1.62 16 38 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.00 8.09 -2.39 -0.02 0.99 16 41 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 42 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.47 8.09 -2.38 -0.02 1.45 16 45 H 0.05 1.33 6.35 -2.39 -0.02 1.32 16 Total: -1.00 -68.49 352.09 4.06 -64.43 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.02 Total: 28.68 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.23 Total: -35.15 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.95 Total: -85.82 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 1.80 Total: 52.82 kcal Total: -68.49 4.06 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166269447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.203 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds