Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09004 * 109.47025 * 54.76795 * 3 2 1 5 5 C 1.53002 * 109.46898 * 174.76585 * 3 2 1 6 6 C 1.50703 * 109.46925 * 293.99305 * 5 3 2 7 7 O 1.21274 * 120.00135 * 353.87665 * 6 5 3 8 8 N 1.34785 * 119.99807 * 173.87351 * 6 5 3 9 9 C 1.46496 * 120.00012 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47428 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47672 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47493 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47031 * 119.99823 * 16 14 12 19 19 H 1.48495 * 109.46717 * 239.99663 * 16 14 12 20 20 C 1.50700 * 109.47556 * 294.76402 * 3 2 1 21 21 C 1.38233 * 119.99764 * 299.73180 * 20 3 2 22 22 C 1.38240 * 119.99570 * 179.78323 * 21 20 3 23 23 C 1.38229 * 120.00112 * 0.44622 * 22 21 20 24 24 C 1.38240 * 120.00181 * 359.80250 * 23 22 21 25 25 C 1.38234 * 119.99630 * 120.00067 * 20 3 2 26 26 H 1.08993 * 109.47028 * 175.25190 * 1 2 3 27 27 H 1.09003 * 109.47207 * 55.24598 * 1 2 3 28 28 H 1.09000 * 109.47091 * 295.25267 * 1 2 3 29 29 H 1.08995 * 109.46833 * 119.99818 * 2 1 3 30 30 H 1.08999 * 109.46991 * 240.00500 * 2 1 3 31 31 H 1.09000 * 109.46896 * 53.99191 * 5 3 2 32 32 H 1.09001 * 109.47344 * 173.99685 * 5 3 2 33 33 H 0.97005 * 120.00028 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47013 * 300.00049 * 9 8 6 35 35 H 1.08997 * 109.47198 * 59.99743 * 9 8 6 36 36 H 1.09001 * 109.46692 * 300.00367 * 10 9 8 37 37 H 1.08997 * 109.47087 * 59.99741 * 10 9 8 38 38 H 1.09000 * 109.47007 * 300.00260 * 11 10 9 39 39 H 1.09007 * 109.46918 * 59.99880 * 11 10 9 40 40 H 0.96999 * 120.00184 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00342 * 359.97438 * 21 20 3 42 42 H 1.08005 * 119.99582 * 180.27363 * 22 21 20 43 43 H 1.08001 * 120.00182 * 179.83251 * 23 22 21 44 44 H 1.07999 * 120.00320 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00742 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6020 1.9827 0.8395 5 6 3.5643 1.4446 0.1316 6 6 3.9523 0.9072 1.4850 7 8 3.0962 0.6616 2.3082 8 7 5.2509 0.6996 1.7807 9 6 5.6281 0.1767 3.0961 10 6 7.1496 0.0347 3.1714 11 6 7.5436 -0.5108 4.5454 12 6 9.0422 -0.6513 4.6193 13 1 9.6526 -0.3783 3.7712 14 6 9.6340 -1.1282 5.7696 15 7 8.8908 -1.4601 6.8026 16 14 11.4918 -1.3016 5.8614 17 1 12.0938 -0.8640 4.5765 18 1 12.0137 -0.4576 6.9661 19 1 11.8444 -2.7218 6.1145 20 6 1.6463 2.1146 -1.2901 21 6 2.0910 1.6081 -2.4970 22 6 1.7262 2.2220 -3.6807 23 6 0.9243 3.3477 -3.6569 24 6 0.4838 3.8572 -2.4497 25 6 0.8450 3.2408 -1.2662 26 1 -0.3633 -1.0241 -0.0851 27 1 -0.3634 0.5858 -0.8444 28 1 -0.3633 0.4384 0.9295 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.9970 0.8159 -0.6466 32 1 3.9369 2.4633 0.0247 33 1 5.9356 0.8957 1.1221 34 1 5.2881 0.8635 3.8712 35 1 5.1647 -0.7984 3.2460 36 1 7.4891 -0.6524 2.3962 37 1 7.6133 1.0096 3.0213 38 1 7.2041 0.1766 5.3202 39 1 7.0798 -1.4857 4.6959 40 1 9.3072 -1.7953 7.6120 41 1 2.7209 0.7310 -2.5153 42 1 2.0701 1.8236 -4.6238 43 1 0.6415 3.8289 -4.5815 44 1 -0.1431 4.7365 -2.4312 45 1 0.5008 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = -52.045745 kcal Electronic energy + Delta-G solvation = -21902.249648 eV Core-core repulsion = 18689.981388 eV Total energy + Delta-G solvation = -3212.268260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24212 -39.16580 -36.06472 -35.13647 -33.31933 -31.49602 -31.15797 -30.93677 -29.83469 -26.81876 -24.79943 -23.15841 -22.85545 -22.49882 -20.75808 -20.37325 -19.52991 -17.42918 -16.63949 -16.38589 -15.69931 -15.47910 -15.37954 -15.04224 -14.52823 -14.44548 -14.27211 -13.99714 -13.60419 -13.39591 -13.03324 -12.73338 -12.70994 -12.29546 -12.00096 -11.83310 -11.71325 -11.53488 -11.30599 -11.12142 -10.93499 -10.75749 -10.70514 -10.69565 -10.57562 -9.87815 -9.81486 -9.36129 -9.15725 -9.11414 -8.90159 -8.75286 -8.38611 -6.02939 -4.06028 1.11901 1.16165 2.80609 3.29116 3.36171 3.38148 3.41192 3.58213 4.43031 4.46441 4.49923 4.75485 4.78077 4.87591 4.88994 5.05515 5.14799 5.25483 5.28348 5.30964 5.32887 5.41606 5.58073 5.70057 5.74512 5.75101 5.77534 5.83986 5.86377 6.01379 6.15272 6.16042 6.20492 6.27493 6.31290 6.46305 6.52196 6.59316 6.76925 6.83574 6.99995 7.62656 7.72874 7.74994 7.95908 8.36390 8.42687 9.00926 9.58275 11.08369 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033155 B = 0.002278 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.325405 B =12287.784629 C =12722.649499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.034 4.034 4 H 0.089 0.911 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.542 6.542 8 N -0.728 5.728 9 C 0.116 3.884 10 C -0.121 4.121 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 8.481 -21.338 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.053 4.053 4 H 0.107 0.893 5 C -0.175 4.175 6 C 0.293 3.707 7 O -0.420 6.420 8 N -0.379 5.379 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.068 4.068 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.231 0.769 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.974 8.226 -20.543 27.889 hybrid contribution 1.438 0.006 -0.206 1.453 sum -15.536 8.232 -20.748 27.196 Atomic orbital electron populations 1.21724 0.95828 1.01292 1.01661 1.21659 0.96216 0.95036 1.02698 1.19984 0.93511 0.97130 0.94625 0.89290 1.21755 0.97156 1.03078 0.95501 1.20592 0.82680 0.78069 0.89354 1.90684 1.49382 1.51627 1.50262 1.46260 1.07388 1.66344 1.17868 1.21627 0.97374 0.98817 0.82839 1.21882 0.91024 1.00900 1.02060 1.19035 0.96332 0.96358 0.89728 1.21239 0.92081 1.43225 0.99445 0.92602 1.25041 0.98215 0.95482 0.95799 1.69975 1.35076 1.44212 1.04002 0.86525 0.85666 0.77725 0.78008 1.19761 1.20990 1.20997 1.19889 0.96933 0.95207 0.94773 1.21028 1.00293 1.00054 0.91960 1.21139 0.98369 0.96136 0.98063 1.21127 0.98741 0.96893 0.97876 1.21143 1.00077 0.99918 0.92586 1.21118 0.98355 0.95610 0.98316 0.93029 0.92993 0.92673 0.90005 0.92466 0.89063 0.88775 0.76860 0.91851 0.91844 0.92763 0.92770 0.96289 0.96289 0.92974 0.86101 0.86239 0.86386 0.86248 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.80 37.16 0.36 -1.09 16 2 C -0.12 -1.26 5.11 -26.73 -0.14 -1.39 16 3 C -0.03 -0.34 1.68 -91.77 -0.15 -0.49 16 4 H 0.09 1.02 7.56 -51.93 -0.39 0.63 16 5 C -0.13 -1.32 4.89 -27.88 -0.14 -1.46 16 6 C 0.51 7.02 7.38 -10.98 -0.08 6.94 16 7 O -0.54 -9.52 14.31 5.56 0.08 -9.44 16 8 N -0.73 -10.06 5.56 -60.30 -0.33 -10.39 16 9 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.07 -0.62 3.70 -104.63 -0.39 -1.01 16 21 C -0.12 -0.97 8.71 -39.58 -0.34 -1.31 16 22 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 23 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -1.02 9.67 -39.58 -0.38 -1.40 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.49 7.24 -51.93 -0.38 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.07 6.19 -51.93 -0.32 0.75 16 30 H 0.06 0.54 7.24 -51.93 -0.38 0.17 16 31 H 0.09 0.73 7.59 -51.93 -0.39 0.34 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.38 8.47 -40.82 -0.35 4.04 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 0.88 7.15 -52.49 -0.38 0.50 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.96 7.95 -52.49 -0.42 0.54 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -32.05 368.46 -9.76 -41.82 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.61 Total: 0.75 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -3.16 Total: -18.64 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.40 Total: -36.48 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.05 -9.76 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.226 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds