Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09004 * 109.47025 * 54.76795 * 3 2 1 5 5 C 1.53002 * 109.46898 * 174.76585 * 3 2 1 6 6 C 1.50703 * 109.46925 * 293.99305 * 5 3 2 7 7 O 1.21274 * 120.00135 * 353.87665 * 6 5 3 8 8 N 1.34785 * 119.99807 * 173.87351 * 6 5 3 9 9 C 1.46496 * 120.00012 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47428 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47672 * 179.97438 * 10 9 8 12 12 C 1.50692 * 109.47493 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00149 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00214 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99854 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47031 * 119.99823 * 16 14 12 19 19 H 1.48495 * 109.46717 * 239.99663 * 16 14 12 20 20 C 1.50700 * 109.47556 * 294.76402 * 3 2 1 21 21 C 1.38233 * 119.99764 * 299.73180 * 20 3 2 22 22 C 1.38240 * 119.99570 * 179.78323 * 21 20 3 23 23 C 1.38229 * 120.00112 * 0.44622 * 22 21 20 24 24 C 1.38240 * 120.00181 * 359.80250 * 23 22 21 25 25 C 1.38234 * 119.99630 * 120.00067 * 20 3 2 26 26 H 1.08993 * 109.47028 * 175.25190 * 1 2 3 27 27 H 1.09003 * 109.47207 * 55.24598 * 1 2 3 28 28 H 1.09000 * 109.47091 * 295.25267 * 1 2 3 29 29 H 1.08995 * 109.46833 * 119.99818 * 2 1 3 30 30 H 1.08999 * 109.46991 * 240.00500 * 2 1 3 31 31 H 1.09000 * 109.46896 * 53.99191 * 5 3 2 32 32 H 1.09001 * 109.47344 * 173.99685 * 5 3 2 33 33 H 0.97005 * 120.00028 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47013 * 300.00049 * 9 8 6 35 35 H 1.08997 * 109.47198 * 59.99743 * 9 8 6 36 36 H 1.09001 * 109.46692 * 300.00367 * 10 9 8 37 37 H 1.08997 * 109.47087 * 59.99741 * 10 9 8 38 38 H 1.09000 * 109.47007 * 300.00260 * 11 10 9 39 39 H 1.09007 * 109.46918 * 59.99880 * 11 10 9 40 40 H 0.96999 * 120.00184 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00342 * 359.97438 * 21 20 3 42 42 H 1.08005 * 119.99582 * 180.27363 * 22 21 20 43 43 H 1.08001 * 120.00182 * 179.83251 * 23 22 21 44 44 H 1.07999 * 120.00320 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.00742 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6020 1.9827 0.8395 5 6 3.5643 1.4446 0.1316 6 6 3.9523 0.9072 1.4850 7 8 3.0962 0.6616 2.3082 8 7 5.2509 0.6996 1.7807 9 6 5.6281 0.1767 3.0961 10 6 7.1496 0.0347 3.1714 11 6 7.5436 -0.5108 4.5454 12 6 9.0422 -0.6513 4.6193 13 1 9.6526 -0.3783 3.7712 14 6 9.6340 -1.1282 5.7696 15 7 8.8908 -1.4601 6.8026 16 14 11.4918 -1.3016 5.8614 17 1 12.0938 -0.8640 4.5765 18 1 12.0137 -0.4576 6.9661 19 1 11.8444 -2.7218 6.1145 20 6 1.6463 2.1146 -1.2901 21 6 2.0910 1.6081 -2.4970 22 6 1.7262 2.2220 -3.6807 23 6 0.9243 3.3477 -3.6569 24 6 0.4838 3.8572 -2.4497 25 6 0.8450 3.2408 -1.2662 26 1 -0.3633 -1.0241 -0.0851 27 1 -0.3634 0.5858 -0.8444 28 1 -0.3633 0.4384 0.9295 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.9970 0.8159 -0.6466 32 1 3.9369 2.4633 0.0247 33 1 5.9356 0.8957 1.1221 34 1 5.2881 0.8635 3.8712 35 1 5.1647 -0.7984 3.2460 36 1 7.4891 -0.6524 2.3962 37 1 7.6133 1.0096 3.0213 38 1 7.2041 0.1766 5.3202 39 1 7.0798 -1.4857 4.6959 40 1 9.3072 -1.7953 7.6120 41 1 2.7209 0.7310 -2.5153 42 1 2.0701 1.8236 -4.6238 43 1 0.6415 3.8289 -4.5815 44 1 -0.1431 4.7365 -2.4312 45 1 0.5008 3.6388 -0.3232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -69.647415 kcal Electronic energy + Delta-G solvation = -21903.012914 eV Core-core repulsion = 18689.981388 eV Total energy + Delta-G solvation = -3213.031526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15890 -40.04088 -37.19903 -36.33833 -35.16759 -33.13627 -31.81617 -31.72664 -30.73343 -28.51716 -25.95206 -24.47755 -23.81116 -23.15087 -22.30205 -21.49187 -20.51169 -18.56263 -18.26490 -17.34505 -16.88627 -16.78761 -16.41956 -16.20622 -15.83983 -15.51129 -15.22558 -14.97401 -14.44239 -14.24128 -14.20354 -14.00307 -13.76305 -13.58129 -13.36495 -13.31685 -12.79065 -12.73396 -12.55304 -12.34710 -12.25962 -11.98711 -11.87127 -11.69114 -11.61535 -11.48695 -11.44553 -11.21799 -10.71410 -10.56993 -10.03991 -9.74164 -9.53398 -8.20289 -6.31854 0.51530 0.57682 1.41456 1.41544 1.54903 1.69629 2.26193 2.42653 2.95752 3.13455 3.64715 3.74702 4.03832 4.11954 4.18148 4.21702 4.23231 4.26673 4.34747 4.37675 4.52482 4.55460 4.58739 4.69921 4.72057 4.81536 4.94258 4.96043 5.03233 5.05060 5.13623 5.16632 5.22180 5.25017 5.37618 5.40187 5.48223 5.54983 5.66935 5.69942 5.70775 5.82358 5.83564 6.19519 6.21565 6.63505 6.86105 7.32589 7.37933 8.92034 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033155 B = 0.002278 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.325405 B =12287.784629 C =12722.649499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.028 4.028 4 H 0.068 0.932 5 C -0.124 4.124 6 C 0.505 3.495 7 O -0.583 6.583 8 N -0.718 5.718 9 C 0.130 3.870 10 C -0.101 4.101 11 C 0.022 3.978 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.131 4.131 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.415 0.585 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.067 0.933 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.316 9.242 -24.326 30.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.047 4.047 4 H 0.086 0.914 5 C -0.163 4.163 6 C 0.293 3.707 7 O -0.464 6.464 8 N -0.370 5.370 9 C 0.006 3.994 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.075 4.075 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.149 4.149 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.252 0.748 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.904 9.004 -23.575 29.829 hybrid contribution 1.030 -0.217 0.715 1.273 sum -14.874 8.787 -22.859 28.653 Atomic orbital electron populations 1.21682 0.95502 1.01611 1.01317 1.21614 0.96567 0.95361 1.01886 1.19860 0.93569 0.96558 0.94736 0.91392 1.21769 0.97091 1.04314 0.93154 1.21341 0.81882 0.77005 0.90461 1.90677 1.50489 1.53271 1.51934 1.46050 1.08203 1.66048 1.16734 1.21180 0.95893 0.97822 0.84530 1.21587 0.92238 1.01430 0.98662 1.18956 0.95472 0.94568 0.92536 1.21709 0.93314 1.42859 0.99853 0.91499 1.26051 1.03722 0.95082 0.95426 1.70120 1.37466 1.45252 1.04757 0.85350 0.79071 0.77740 0.78577 1.18138 1.20590 1.20575 1.19761 0.97830 0.95585 0.94372 1.21196 1.00467 1.00475 0.91805 1.21429 0.98048 0.96044 0.98667 1.21444 0.98234 0.96847 0.98527 1.21383 1.00185 1.00411 0.92438 1.21250 0.98779 0.95953 0.98878 0.92515 0.92380 0.93766 0.92899 0.90966 0.86349 0.86895 0.74784 0.93568 0.93460 0.91330 0.91423 0.99083 0.99039 0.92819 0.84956 0.84315 0.84438 0.84746 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 71.98 0.71 -2.12 16 2 C -0.12 -2.43 5.11 30.60 0.16 -2.28 16 3 C -0.03 -0.55 1.68 -11.54 -0.02 -0.57 16 4 H 0.07 1.60 7.56 -2.38 -0.02 1.59 16 5 C -0.12 -2.20 4.89 29.85 0.15 -2.05 16 6 C 0.50 13.70 7.38 87.66 0.65 14.35 16 7 O -0.58 -21.10 14.31 -3.01 -0.04 -21.14 16 8 N -0.72 -19.04 5.56 -463.07 -2.57 -21.62 16 9 C 0.13 4.58 5.67 86.38 0.49 5.07 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.02 1.17 4.97 29.84 0.15 1.32 16 12 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 13 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 14 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 15 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.08 -1.26 3.70 -19.87 -0.07 -1.33 16 21 C -0.12 -1.73 8.71 22.27 0.19 -1.53 16 22 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 23 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 25 C -0.13 -2.15 9.67 22.27 0.22 -1.93 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.06 7.24 -2.39 -0.02 1.04 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.42 6.19 -2.39 -0.01 1.41 16 30 H 0.07 1.26 7.24 -2.39 -0.02 1.24 16 31 H 0.12 1.50 7.59 -2.39 -0.02 1.49 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.42 8.11 8.47 -92.70 -0.79 7.32 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.13 1.51 7.15 -2.91 -0.02 1.49 16 42 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.12 1.89 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -70.78 368.46 4.00 -66.77 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.17 Total: 16.08 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 4.14 Total: -28.85 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.29 Total: -78.71 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.04 Total: -21.14 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.78 4.00 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.873 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds