Wall clock time and date at job start Tue Mar 31 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 C 1.50696 * 109.47344 * 64.99877 * 5 3 2 7 7 O 1.21278 * 119.99753 * 0.02562 * 6 5 3 8 8 N 1.34771 * 120.00023 * 179.97438 * 6 5 3 9 9 C 1.46501 * 119.99915 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46932 * 180.02562 * 9 8 6 11 11 C 1.53009 * 109.46870 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46839 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00050 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00088 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46828 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47218 * 119.99677 * 16 14 12 19 19 H 1.48499 * 109.47069 * 239.99894 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 3 2 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 3 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 3 2 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 32 32 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 33 33 H 0.97002 * 120.00482 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47369 * 299.99973 * 9 8 6 35 35 H 1.08997 * 109.47275 * 60.00335 * 9 8 6 36 36 H 1.08999 * 109.47369 * 299.99890 * 10 9 8 37 37 H 1.08997 * 109.46991 * 60.00552 * 10 9 8 38 38 H 1.08999 * 109.46970 * 300.00055 * 11 10 9 39 39 H 1.08997 * 109.46927 * 60.00434 * 11 10 9 40 40 H 0.97005 * 120.00453 * 180.02562 * 15 14 12 41 41 H 1.08010 * 119.99941 * 359.97438 * 21 20 3 42 42 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 43 43 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 44 44 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00084 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 3.9590 0.8819 -1.4672 7 8 3.1044 0.5163 -2.2462 8 7 5.2611 0.7864 -1.8016 9 6 5.6442 0.2403 -3.1059 10 6 7.1690 0.2419 -3.2315 11 6 7.5691 -0.3278 -4.5941 12 6 9.0711 -0.3268 -4.7175 13 1 9.6793 0.0436 -3.9056 14 6 9.6685 -0.7977 -5.8674 15 7 8.9277 -1.2482 -6.8563 16 14 11.5302 -0.7958 -6.0208 17 1 12.1286 -0.2417 -4.7797 18 1 12.0115 -2.1856 -6.2252 19 1 11.9305 0.0421 -7.1796 20 6 1.6414 2.1163 1.2877 21 6 2.0721 1.6049 2.4976 22 6 1.7096 2.2252 3.6785 23 6 0.9098 3.3522 3.6500 24 6 0.4746 3.8605 2.4404 25 6 0.8403 3.2424 1.2593 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6659 33 1 5.9446 1.0791 -1.1787 34 1 5.2737 -0.7809 -3.1953 35 1 5.2134 0.8537 -3.8973 36 1 7.5399 1.2630 -3.1420 37 1 7.5994 -0.3717 -2.4402 38 1 7.1982 -1.3488 -4.6840 39 1 7.1387 0.2862 -5.3851 40 1 9.3480 -1.5799 -7.6652 41 1 2.6941 0.7221 2.5200 42 1 2.0493 1.8277 4.6236 43 1 0.6243 3.8353 4.5728 44 1 -0.1506 4.7408 2.4181 45 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:25 Heat of formation + Delta-G solvation = -51.286341 kcal Electronic energy + Delta-G solvation = -21902.930644 eV Core-core repulsion = 18690.695314 eV Total energy + Delta-G solvation = -3212.235330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24726 -39.16848 -36.06621 -35.11920 -33.32272 -31.50240 -31.15786 -30.91660 -29.83496 -26.81932 -24.79393 -23.15321 -22.84834 -22.49019 -20.75373 -20.37098 -19.54984 -17.42630 -16.64002 -16.38784 -15.72918 -15.45538 -15.36120 -15.04163 -14.52185 -14.44900 -14.27126 -13.97675 -13.60516 -13.38817 -13.03358 -12.73780 -12.70504 -12.29644 -11.99419 -11.83381 -11.71573 -11.52421 -11.29619 -11.10905 -10.93800 -10.76881 -10.70203 -10.69764 -10.57174 -9.87952 -9.77774 -9.34839 -9.15617 -9.11302 -8.89847 -8.75013 -8.38674 -6.02975 -4.06074 1.12189 1.16397 2.80042 3.29096 3.36133 3.38072 3.41135 3.58486 4.43068 4.47671 4.50333 4.75660 4.78480 4.87533 4.89219 5.05571 5.15971 5.25850 5.29473 5.31743 5.32865 5.41805 5.59401 5.70430 5.74875 5.75086 5.77532 5.84805 5.87378 6.02871 6.15787 6.16641 6.21596 6.27698 6.34310 6.46405 6.53561 6.59264 6.77171 6.83609 6.99910 7.62603 7.72717 7.74951 7.95845 8.36313 8.42643 9.00863 9.58238 11.08323 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032957 B = 0.002278 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.384618 B =12285.844884 C =12747.360081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.033 4.033 4 H 0.087 0.913 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.541 6.541 8 N -0.728 5.728 9 C 0.116 3.884 10 C -0.121 4.121 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.453 8.130 21.348 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.051 4.051 4 H 0.105 0.895 5 C -0.175 4.175 6 C 0.293 3.707 7 O -0.419 6.419 8 N -0.378 5.378 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.015 4.015 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.068 4.068 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.050 7.782 20.588 27.841 hybrid contribution 1.434 0.158 0.165 1.452 sum -15.616 7.940 20.753 27.159 Atomic orbital electron populations 1.21717 0.95926 1.01279 1.01496 1.21724 0.96116 0.95037 1.03022 1.19974 0.93443 0.97167 0.94557 0.89497 1.21751 0.97146 1.02912 0.95691 1.20591 0.82693 0.78628 0.88796 1.90671 1.49583 1.49130 1.52503 1.46258 1.07126 1.64618 1.19836 1.21629 0.97305 0.98632 0.83090 1.21886 0.90980 1.01064 1.01945 1.19038 0.96304 0.96292 0.89818 1.21240 0.91846 1.41668 1.01236 0.92602 1.25039 0.98243 0.95359 0.95898 1.69975 1.35043 1.42313 1.05935 0.86525 0.85696 0.77676 0.78023 1.19762 1.20992 1.20996 1.19898 0.96944 0.95173 0.94787 1.21028 1.00378 0.99974 0.91955 1.21136 0.98381 0.96104 0.98088 1.21126 0.98746 0.96925 0.97852 1.21137 1.00091 0.99903 0.92588 1.21111 0.98314 0.95660 0.98328 0.93145 0.92728 0.93042 0.89397 0.92579 0.88896 0.88934 0.76856 0.91838 0.91843 0.92769 0.92762 0.96287 0.96287 0.92974 0.86109 0.86244 0.86389 0.86254 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.73 37.16 0.36 -1.10 16 2 C -0.12 -1.30 5.08 -26.73 -0.14 -1.44 16 3 C -0.03 -0.33 1.69 -91.77 -0.15 -0.48 16 4 H 0.09 0.99 7.69 -51.93 -0.40 0.59 16 5 C -0.13 -1.32 4.92 -27.88 -0.14 -1.46 16 6 C 0.51 6.98 7.51 -10.99 -0.08 6.90 16 7 O -0.54 -9.43 13.99 5.56 0.08 -9.35 16 8 N -0.73 -10.03 5.56 -60.30 -0.33 -10.36 16 9 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.07 -0.62 3.76 -104.63 -0.39 -1.01 16 21 C -0.12 -0.97 8.71 -39.58 -0.34 -1.32 16 22 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 23 C -0.13 -0.97 10.05 -39.59 -0.40 -1.37 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.12 -1.02 9.67 -39.59 -0.38 -1.40 16 26 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 30 H 0.06 0.54 7.21 -51.93 -0.37 0.17 16 31 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.09 0.75 7.59 -51.93 -0.39 0.35 16 33 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 0.89 7.13 -52.48 -0.37 0.52 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.95 7.95 -52.49 -0.42 0.54 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -31.96 368.17 -9.78 -41.74 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.61 Total: 0.81 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.18 Total: -18.75 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.40 Total: -36.44 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -9.78 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.544 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds