Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 C 1.50696 * 109.47344 * 64.99877 * 5 3 2 7 7 O 1.21278 * 119.99753 * 0.02562 * 6 5 3 8 8 N 1.34771 * 120.00023 * 179.97438 * 6 5 3 9 9 C 1.46501 * 119.99915 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46932 * 180.02562 * 9 8 6 11 11 C 1.53009 * 109.46870 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46839 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00050 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00088 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46828 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47218 * 119.99677 * 16 14 12 19 19 H 1.48499 * 109.47069 * 239.99894 * 16 14 12 20 20 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 21 21 C 1.38236 * 119.99963 * 59.72884 * 20 3 2 22 22 C 1.38236 * 120.00036 * 179.81111 * 21 20 3 23 23 C 1.38226 * 119.99834 * 0.39071 * 22 21 20 24 24 C 1.38237 * 120.00085 * 359.86461 * 23 22 21 25 25 C 1.38229 * 120.00216 * 240.00128 * 20 3 2 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 32 32 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 33 33 H 0.97002 * 120.00482 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47369 * 299.99973 * 9 8 6 35 35 H 1.08997 * 109.47275 * 60.00335 * 9 8 6 36 36 H 1.08999 * 109.47369 * 299.99890 * 10 9 8 37 37 H 1.08997 * 109.46991 * 60.00552 * 10 9 8 38 38 H 1.08999 * 109.46970 * 300.00055 * 11 10 9 39 39 H 1.08997 * 109.46927 * 60.00434 * 11 10 9 40 40 H 0.97005 * 120.00453 * 180.02562 * 15 14 12 41 41 H 1.08010 * 119.99941 * 359.97438 * 21 20 3 42 42 H 1.08001 * 119.99466 * 180.23187 * 22 21 20 43 43 H 1.08005 * 120.00406 * 179.83264 * 23 22 21 44 44 H 1.07998 * 120.00065 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00084 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 3.9590 0.8819 -1.4672 7 8 3.1044 0.5163 -2.2462 8 7 5.2611 0.7864 -1.8016 9 6 5.6442 0.2403 -3.1059 10 6 7.1690 0.2419 -3.2315 11 6 7.5691 -0.3278 -4.5941 12 6 9.0711 -0.3268 -4.7175 13 1 9.6793 0.0436 -3.9056 14 6 9.6685 -0.7977 -5.8674 15 7 8.9277 -1.2482 -6.8563 16 14 11.5302 -0.7958 -6.0208 17 1 12.1286 -0.2417 -4.7797 18 1 12.0115 -2.1856 -6.2252 19 1 11.9305 0.0421 -7.1796 20 6 1.6414 2.1163 1.2877 21 6 2.0721 1.6049 2.4976 22 6 1.7096 2.2252 3.6785 23 6 0.9098 3.3522 3.6500 24 6 0.4746 3.8605 2.4404 25 6 0.8403 3.2424 1.2593 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9356 2.4654 -0.0366 32 1 3.9954 0.8310 0.6659 33 1 5.9446 1.0791 -1.1787 34 1 5.2737 -0.7809 -3.1953 35 1 5.2134 0.8537 -3.8973 36 1 7.5399 1.2630 -3.1420 37 1 7.5994 -0.3717 -2.4402 38 1 7.1982 -1.3488 -4.6840 39 1 7.1387 0.2862 -5.3851 40 1 9.3480 -1.5799 -7.6652 41 1 2.6941 0.7221 2.5200 42 1 2.0493 1.8277 4.6236 43 1 0.6243 3.8353 4.5728 44 1 -0.1506 4.7408 2.4181 45 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -68.767586 kcal Electronic energy + Delta-G solvation = -21903.688688 eV Core-core repulsion = 18690.695314 eV Total energy + Delta-G solvation = -3212.993374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16422 -40.03773 -37.20665 -36.31377 -35.16540 -33.14022 -31.80648 -31.72481 -30.73215 -28.51606 -25.94866 -24.47160 -23.80612 -23.14489 -22.30065 -21.47751 -20.53594 -18.56184 -18.25734 -17.35031 -16.90353 -16.76358 -16.42185 -16.20571 -15.80832 -15.52996 -15.22342 -14.96327 -14.42819 -14.25227 -14.18780 -13.99331 -13.75952 -13.59671 -13.36872 -13.30787 -12.78894 -12.73760 -12.55233 -12.34676 -12.24184 -11.98050 -11.86354 -11.70158 -11.63365 -11.48183 -11.44306 -11.21110 -10.65982 -10.56976 -10.02950 -9.74255 -9.53200 -8.20264 -6.31825 0.51618 0.57707 1.41440 1.41555 1.54875 1.69790 2.26435 2.42693 2.95857 3.13486 3.65723 3.75351 4.04042 4.11898 4.18475 4.21975 4.23195 4.27267 4.35526 4.37594 4.53422 4.55615 4.59046 4.69903 4.72476 4.82273 4.94468 4.96459 5.03244 5.05733 5.14875 5.16717 5.22572 5.24979 5.38276 5.41614 5.49522 5.56226 5.67312 5.70055 5.70763 5.82434 5.83610 6.19535 6.21587 6.63806 6.86115 7.33108 7.37967 8.92045 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032957 B = 0.002278 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.384618 B =12285.844884 C =12747.360081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.027 4.027 4 H 0.067 0.933 5 C -0.124 4.124 6 C 0.504 3.496 7 O -0.582 6.582 8 N -0.718 5.718 9 C 0.130 3.870 10 C -0.101 4.101 11 C 0.022 3.978 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.130 4.130 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.415 0.585 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.068 0.932 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 9.118 24.221 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.046 4.046 4 H 0.086 0.914 5 C -0.163 4.163 6 C 0.293 3.707 7 O -0.462 6.462 8 N -0.370 5.370 9 C 0.006 3.994 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.252 0.748 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.023 8.790 23.504 29.773 hybrid contribution 1.038 -0.143 -0.717 1.270 sum -14.985 8.647 22.787 28.611 Atomic orbital electron populations 1.21674 0.95574 1.01459 1.01298 1.21668 0.96484 0.95436 1.02127 1.19852 0.93527 0.96531 0.94709 0.91436 1.21762 0.97048 1.04116 0.93403 1.21334 0.81906 0.77633 0.89851 1.90667 1.50653 1.50764 1.54101 1.46050 1.07945 1.64377 1.18671 1.21180 0.95805 0.97701 0.84725 1.21591 0.92214 1.01486 0.98640 1.18959 0.95454 0.94582 0.92537 1.21710 0.93093 1.41322 1.01610 0.91510 1.26047 1.03772 0.94896 0.95563 1.70120 1.37427 1.43388 1.06655 0.85351 0.79080 0.77801 0.78510 1.18147 1.20564 1.20599 1.19770 0.97838 0.95557 0.94377 1.21191 1.00568 1.00388 0.91835 1.21423 0.98072 0.96028 0.98680 1.21442 0.98237 0.96871 0.98515 1.21380 1.00186 1.00399 0.92441 1.21247 0.98699 0.95974 0.98912 0.92492 0.93695 0.92676 0.92332 0.91212 0.86910 0.86368 0.74805 0.93439 0.93551 0.91437 0.91345 0.99028 0.99077 0.92819 0.85053 0.84348 0.84441 0.84731 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.73 71.98 0.70 -2.13 16 2 C -0.12 -2.53 5.08 30.59 0.16 -2.37 16 3 C -0.03 -0.53 1.69 -11.54 -0.02 -0.55 16 4 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 5 C -0.12 -2.19 4.92 29.85 0.15 -2.04 16 6 C 0.50 13.61 7.51 87.66 0.66 14.27 16 7 O -0.58 -20.83 13.99 -3.02 -0.04 -20.87 16 8 N -0.72 -18.99 5.56 -463.08 -2.57 -21.56 16 9 C 0.13 4.58 5.67 86.38 0.49 5.07 16 10 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 14 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 15 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 C -0.08 -1.26 3.76 -19.87 -0.07 -1.33 16 21 C -0.12 -1.75 8.71 22.27 0.19 -1.56 16 22 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 25 C -0.13 -2.13 9.67 22.27 0.22 -1.92 16 26 H 0.06 1.04 7.38 -2.39 -0.02 1.03 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 30 H 0.07 1.25 7.21 -2.39 -0.02 1.23 16 31 H 0.11 1.61 8.14 -2.38 -0.02 1.60 16 32 H 0.12 1.54 7.59 -2.39 -0.02 1.52 16 33 H 0.42 8.11 8.47 -92.71 -0.79 7.32 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.26 15.12 8.31 -92.70 -0.77 14.34 16 41 H 0.13 1.54 7.13 -2.91 -0.02 1.52 16 42 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.12 1.87 7.95 -2.91 -0.02 1.85 16 Total: -1.00 -70.49 368.17 4.01 -66.48 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.17 Total: 16.23 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 4.14 Total: -29.05 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.29 Total: -78.64 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.04 Total: -20.87 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.49 4.01 -66.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.284 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds