Wall clock time and date at job start Tue Mar 31 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.08993 * 109.47204 * 305.64473 * 3 2 1 5 5 C 1.52997 * 109.47010 * 65.64605 * 3 2 1 6 6 C 1.50708 * 109.47379 * 62.54428 * 5 3 2 7 7 O 1.21283 * 119.99302 * 354.20316 * 6 5 3 8 8 N 1.34770 * 120.00052 * 174.21348 * 6 5 3 9 9 C 1.37145 * 120.00279 * 5.06814 * 8 6 5 10 10 H 1.07994 * 119.99747 * 351.74100 * 9 8 6 11 11 C 1.38890 * 119.99794 * 171.73554 * 9 8 6 12 12 N 1.31416 * 120.00090 * 359.88963 * 11 9 8 13 13 Si 1.86799 * 119.99473 * 179.89418 * 11 9 8 14 14 H 1.48497 * 109.47602 * 59.99697 * 13 11 9 15 15 H 1.48501 * 109.46829 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47237 * 299.99404 * 13 11 9 17 17 C 1.39785 * 119.99796 * 185.07141 * 8 6 5 18 18 C 1.38962 * 120.07743 * 97.08335 * 17 8 6 19 19 C 1.38091 * 119.92090 * 180.29631 * 18 17 8 20 20 C 1.38298 * 120.07719 * 359.97438 * 19 18 17 21 21 C 1.38313 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38083 * 120.07296 * 0.02562 * 21 20 19 23 23 C 1.53004 * 109.47088 * 185.64447 * 3 2 1 24 24 C 1.52999 * 109.46911 * 59.99659 * 23 3 2 25 25 C 1.52996 * 109.47357 * 180.02562 * 23 3 2 26 26 H 1.09000 * 109.47172 * 184.16158 * 1 2 3 27 27 H 1.09003 * 109.47361 * 304.15902 * 1 2 3 28 28 H 1.09002 * 109.47455 * 64.16230 * 1 2 3 29 29 H 1.09003 * 109.46989 * 240.00358 * 2 1 3 30 30 H 1.08994 * 109.46885 * 119.99934 * 2 1 3 31 31 H 1.08996 * 109.47651 * 302.53590 * 5 3 2 32 32 H 1.09005 * 109.46957 * 182.53758 * 5 3 2 33 33 H 0.97001 * 119.99640 * 185.00807 * 12 11 9 34 34 H 1.07998 * 120.04378 * 0.25192 * 18 17 8 35 35 H 1.08000 * 119.95792 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.92033 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.96207 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.03375 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.46770 * 300.00587 * 23 3 2 40 40 H 1.09002 * 109.47087 * 179.97438 * 24 23 3 41 41 H 1.08994 * 109.47550 * 300.00550 * 24 23 3 42 42 H 1.09006 * 109.47091 * 60.00287 * 24 23 3 43 43 H 1.08999 * 109.46741 * 60.00039 * 25 23 3 44 44 H 1.08999 * 109.46790 * 180.02562 * 25 23 3 45 45 H 1.09001 * 109.47072 * 300.00248 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 1.6491 2.1216 1.3141 6 6 2.3129 1.4094 2.4645 7 8 2.9422 0.3918 2.2657 8 7 2.2072 1.9033 3.7140 9 6 1.4111 2.9936 3.9554 10 1 0.9756 3.5375 3.1303 11 6 1.1648 3.3982 5.2611 12 7 1.6929 2.7349 6.2652 13 14 0.0828 4.8850 5.5897 14 1 -1.2704 4.6467 5.0266 15 1 -0.0218 5.1070 7.0543 16 1 0.6813 6.0839 4.9495 17 6 2.9090 1.3041 4.7640 18 6 4.1290 1.8277 5.1744 19 6 4.8226 1.2296 6.2080 20 6 4.3040 0.1112 6.8348 21 6 3.0895 -0.4120 6.4296 22 6 2.3906 0.1809 5.3968 23 6 3.5634 1.4450 -0.1419 24 6 3.9542 0.7658 -1.4560 25 6 4.0734 2.8874 -0.1412 26 1 -0.3633 -1.0250 0.0746 27 1 -0.3634 0.5770 0.8504 28 1 -0.3634 0.4479 -0.9249 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5668 2.0800 1.4368 32 1 1.9728 3.1623 1.2957 33 1 1.4632 2.9721 7.1773 34 1 4.5347 2.7009 4.6852 35 1 5.7710 1.6358 6.5271 36 1 4.8488 -0.3548 7.6425 37 1 2.6877 -1.2858 6.9211 38 1 1.4425 -0.2284 5.0807 39 1 4.0069 0.9027 0.6932 40 1 5.0395 0.7679 -1.5573 41 1 3.5909 -0.2618 -1.4560 42 1 3.5107 1.3079 -2.2912 43 1 3.7949 3.3708 0.7952 44 1 5.1587 2.8890 -0.2428 45 1 3.6299 3.4300 -0.9761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171742053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:22 Heat of formation + Delta-G solvation = -15.387121 kcal Electronic energy + Delta-G solvation = -24483.815063 eV Core-core repulsion = 21273.136440 eV Total energy + Delta-G solvation = -3210.678623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.69623 -38.02426 -36.20789 -34.58100 -32.39212 -31.62692 -29.87453 -29.76135 -28.23784 -26.69504 -25.01619 -24.41475 -21.68964 -21.42698 -20.83395 -19.56886 -18.92096 -17.39987 -16.08152 -15.44724 -15.16195 -14.69029 -14.48184 -14.30652 -13.99828 -13.78732 -13.51647 -13.13423 -12.71133 -12.49871 -12.36201 -12.30914 -11.86893 -11.67135 -11.52759 -11.37627 -11.25203 -11.22969 -11.11139 -10.96188 -10.85526 -10.53658 -10.39686 -10.34347 -10.17065 -9.96843 -9.66019 -9.61438 -9.37209 -8.23514 -8.04400 -7.72457 -7.62416 -6.09713 -4.00388 2.61476 2.62803 3.08656 3.16550 3.17870 3.78088 4.02481 4.65833 4.99701 5.08768 5.26673 5.28704 5.38960 5.59299 5.77894 5.85989 5.88649 5.90284 5.97012 5.97941 6.07535 6.08326 6.14356 6.19836 6.23408 6.33212 6.33619 6.37622 6.44104 6.51751 6.54403 6.65330 6.69446 6.78142 6.89365 6.94800 7.03421 7.16838 7.20379 7.34621 7.45781 7.56742 7.68807 7.87556 8.06083 8.48528 9.01547 9.40132 9.83132 10.63294 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.006638 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.120572 B = 4217.402881 C = 5120.250588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C -0.058 4.058 4 H 0.058 0.942 5 C -0.121 4.121 6 C 0.471 3.529 7 O -0.584 6.584 8 N -0.423 5.423 9 C -0.342 4.342 10 H 0.103 0.897 11 C 0.037 3.963 12 N -0.853 5.853 13 Si 0.924 3.076 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.265 3.735 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.093 4.093 23 C -0.107 4.107 24 C -0.142 4.142 25 C -0.146 4.146 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.272 0.728 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -1.034 -6.556 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C -0.077 4.077 4 H 0.076 0.924 5 C -0.161 4.161 6 C 0.262 3.738 7 O -0.470 6.470 8 N -0.139 5.139 9 C -0.469 4.469 10 H 0.121 0.879 11 C -0.169 4.169 12 N -0.490 5.490 13 Si 0.750 3.250 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.174 3.826 18 C -0.129 4.129 19 C -0.136 4.136 20 C -0.170 4.170 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.200 4.200 25 C -0.204 4.204 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.208 -1.439 -6.410 6.680 hybrid contribution -0.833 1.125 0.504 1.487 sum 0.375 -0.314 -5.906 5.927 Atomic orbital electron populations 1.21833 0.97199 1.00831 1.01025 1.21899 0.94511 0.97060 1.03673 1.20891 0.95222 0.96053 0.95554 0.92360 1.21563 1.01296 1.00078 0.93125 1.20104 0.84226 0.85971 0.83543 1.90425 1.46673 1.25976 1.83926 1.41494 1.40207 1.27437 1.04792 1.19687 1.27370 1.06093 0.93705 0.87890 1.25274 0.97463 0.98782 0.95423 1.69866 1.40383 1.39306 0.99408 0.86044 0.80068 0.81244 0.77645 1.19921 1.20821 1.19882 1.16911 0.89012 0.89880 0.86794 1.20802 0.95086 0.99113 0.97861 1.20585 0.99073 0.96764 0.97132 1.20630 0.97102 0.98253 1.01044 1.20600 0.95616 0.99654 0.97793 1.20775 0.98242 0.96344 0.95873 1.21425 0.95701 0.96174 0.99222 1.21855 1.00187 1.00558 0.97351 1.21874 1.00053 0.97055 1.01368 0.93586 0.92559 0.93841 0.92987 0.88385 0.89912 0.90083 0.91627 0.88151 0.88045 0.88163 0.88042 0.88263 0.87676 0.93611 0.92636 0.93799 0.92426 0.93552 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.77 37.16 0.36 -1.86 16 2 C -0.13 -2.19 4.98 -26.73 -0.13 -2.32 16 3 C -0.06 -0.94 1.71 -90.62 -0.16 -1.10 16 4 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.12 -2.23 3.29 -27.88 -0.09 -2.32 16 6 C 0.47 10.54 6.96 -10.98 -0.08 10.46 16 7 O -0.58 -13.91 11.37 5.55 0.06 -13.85 16 8 N -0.42 -10.28 2.66 -58.98 -0.16 -10.43 16 9 C -0.34 -8.32 9.36 -14.93 -0.14 -8.46 16 10 H 0.10 2.33 6.32 -52.49 -0.33 1.99 16 11 C 0.04 0.89 5.44 -17.49 -0.10 0.80 16 12 N -0.85 -21.79 9.45 55.49 0.52 -21.26 16 13 Si 0.92 19.18 29.56 -169.99 -5.02 14.16 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 C 0.27 6.52 2.20 -83.70 -0.18 6.34 16 18 C -0.11 -2.55 9.19 -39.37 -0.36 -2.92 16 19 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 20 C -0.15 -3.03 10.04 -39.53 -0.40 -3.43 16 21 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 22 C -0.09 -2.20 9.05 -39.37 -0.36 -2.56 16 23 C -0.11 -1.74 2.17 -90.62 -0.20 -1.94 16 24 C -0.14 -1.97 8.85 37.16 0.33 -1.64 16 25 C -0.15 -2.21 8.84 37.16 0.33 -1.88 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.88 6.35 -51.93 -0.33 0.55 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.77 6.14 -51.93 -0.32 0.45 16 30 H 0.10 1.92 5.43 -51.93 -0.28 1.64 16 31 H 0.08 1.49 6.34 -51.93 -0.33 1.16 16 32 H 0.08 1.45 6.13 -51.93 -0.32 1.14 16 33 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 34 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.11 2.08 5.51 -51.93 -0.29 1.79 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.76 6.31 -51.93 -0.33 0.43 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.95 6.49 -51.93 -0.34 0.62 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -26.62 346.92 -8.40 -35.02 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.07 Total: 9.65 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.96 Total: -18.51 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.37 Total: -31.70 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.06 Total: -13.85 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.62 -8.40 -35.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171742053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.633 kcal (2) G-P(sol) polarization free energy of solvation -26.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds