Wall clock time and date at job start Tue Mar 31 2020 05:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.08993 * 109.47204 * 305.64473 * 3 2 1 5 5 C 1.52997 * 109.47010 * 65.64605 * 3 2 1 6 6 C 1.50708 * 109.47379 * 62.54428 * 5 3 2 7 7 O 1.21283 * 119.99302 * 354.20316 * 6 5 3 8 8 N 1.34770 * 120.00052 * 174.21348 * 6 5 3 9 9 C 1.37145 * 120.00279 * 5.06814 * 8 6 5 10 10 H 1.07994 * 119.99747 * 351.74100 * 9 8 6 11 11 C 1.38890 * 119.99794 * 171.73554 * 9 8 6 12 12 N 1.31416 * 120.00090 * 359.88963 * 11 9 8 13 13 Si 1.86799 * 119.99473 * 179.89418 * 11 9 8 14 14 H 1.48497 * 109.47602 * 59.99697 * 13 11 9 15 15 H 1.48501 * 109.46829 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47237 * 299.99404 * 13 11 9 17 17 C 1.39785 * 119.99796 * 185.07141 * 8 6 5 18 18 C 1.38962 * 120.07743 * 97.08335 * 17 8 6 19 19 C 1.38091 * 119.92090 * 180.29631 * 18 17 8 20 20 C 1.38298 * 120.07719 * 359.97438 * 19 18 17 21 21 C 1.38313 * 120.16028 * 359.97438 * 20 19 18 22 22 C 1.38083 * 120.07296 * 0.02562 * 21 20 19 23 23 C 1.53004 * 109.47088 * 185.64447 * 3 2 1 24 24 C 1.52999 * 109.46911 * 59.99659 * 23 3 2 25 25 C 1.52996 * 109.47357 * 180.02562 * 23 3 2 26 26 H 1.09000 * 109.47172 * 184.16158 * 1 2 3 27 27 H 1.09003 * 109.47361 * 304.15902 * 1 2 3 28 28 H 1.09002 * 109.47455 * 64.16230 * 1 2 3 29 29 H 1.09003 * 109.46989 * 240.00358 * 2 1 3 30 30 H 1.08994 * 109.46885 * 119.99934 * 2 1 3 31 31 H 1.08996 * 109.47651 * 302.53590 * 5 3 2 32 32 H 1.09005 * 109.46957 * 182.53758 * 5 3 2 33 33 H 0.97001 * 119.99640 * 185.00807 * 12 11 9 34 34 H 1.07998 * 120.04378 * 0.25192 * 18 17 8 35 35 H 1.08000 * 119.95792 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.92033 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.96207 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.03375 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.46770 * 300.00587 * 23 3 2 40 40 H 1.09002 * 109.47087 * 179.97438 * 24 23 3 41 41 H 1.08994 * 109.47550 * 300.00550 * 24 23 3 42 42 H 1.09006 * 109.47091 * 60.00287 * 24 23 3 43 43 H 1.08999 * 109.46741 * 60.00039 * 25 23 3 44 44 H 1.08999 * 109.46790 * 180.02562 * 25 23 3 45 45 H 1.09001 * 109.47072 * 300.00248 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 1.6491 2.1216 1.3141 6 6 2.3129 1.4094 2.4645 7 8 2.9422 0.3918 2.2657 8 7 2.2072 1.9033 3.7140 9 6 1.4111 2.9936 3.9554 10 1 0.9756 3.5375 3.1303 11 6 1.1648 3.3982 5.2611 12 7 1.6929 2.7349 6.2652 13 14 0.0828 4.8850 5.5897 14 1 -1.2704 4.6467 5.0266 15 1 -0.0218 5.1070 7.0543 16 1 0.6813 6.0839 4.9495 17 6 2.9090 1.3041 4.7640 18 6 4.1290 1.8277 5.1744 19 6 4.8226 1.2296 6.2080 20 6 4.3040 0.1112 6.8348 21 6 3.0895 -0.4120 6.4296 22 6 2.3906 0.1809 5.3968 23 6 3.5634 1.4450 -0.1419 24 6 3.9542 0.7658 -1.4560 25 6 4.0734 2.8874 -0.1412 26 1 -0.3633 -1.0250 0.0746 27 1 -0.3634 0.5770 0.8504 28 1 -0.3634 0.4479 -0.9249 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5668 2.0800 1.4368 32 1 1.9728 3.1623 1.2957 33 1 1.4632 2.9721 7.1773 34 1 4.5347 2.7009 4.6852 35 1 5.7710 1.6358 6.5271 36 1 4.8488 -0.3548 7.6425 37 1 2.6877 -1.2858 6.9211 38 1 1.4425 -0.2284 5.0807 39 1 4.0069 0.9027 0.6932 40 1 5.0395 0.7679 -1.5573 41 1 3.5909 -0.2618 -1.4560 42 1 3.5107 1.3079 -2.2912 43 1 3.7949 3.3708 0.7952 44 1 5.1587 2.8890 -0.2428 45 1 3.6299 3.4300 -0.9761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171742053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:22 Heat of formation + Delta-G solvation = -26.073520 kcal Electronic energy + Delta-G solvation = -24484.278460 eV Core-core repulsion = 21273.136440 eV Total energy + Delta-G solvation = -3211.142020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37692 -39.60387 -37.75117 -36.34483 -33.64398 -33.47200 -31.48563 -31.41463 -29.79380 -27.88100 -26.81488 -25.82624 -23.27626 -23.14665 -22.17370 -21.15198 -20.53955 -19.09508 -17.76979 -17.16271 -16.66354 -16.43505 -16.09299 -15.84535 -15.47521 -15.16601 -15.03611 -14.62956 -14.29449 -14.04900 -13.96094 -13.56453 -13.38859 -13.06529 -12.98078 -12.90684 -12.83170 -12.69803 -12.53948 -12.39441 -12.21287 -12.18907 -12.02606 -11.99668 -11.59908 -11.41356 -11.11059 -10.95523 -10.93442 -9.93243 -9.86019 -9.46002 -9.37389 -7.91680 -5.88786 0.87530 0.92586 1.43782 1.46256 1.54653 2.04810 2.29954 2.98577 3.21203 3.30025 3.97214 3.98277 4.09556 4.27894 4.33092 4.35676 4.43448 4.49087 4.57544 4.66473 4.70582 4.76137 4.82796 4.85459 4.88204 4.95201 4.97309 5.05776 5.06753 5.18488 5.20543 5.22388 5.25502 5.42535 5.45168 5.46250 5.53423 5.63187 5.69484 5.73013 5.83803 5.86511 5.98424 6.11659 6.33064 6.68260 7.17265 7.61536 8.04729 8.78757 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.006638 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.120572 B = 4217.402881 C = 5120.250588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.054 4.054 4 H 0.087 0.913 5 C -0.114 4.114 6 C 0.464 3.536 7 O -0.603 6.603 8 N -0.440 5.440 9 C -0.357 4.357 10 H 0.115 0.885 11 C -0.008 4.008 12 N -0.876 5.876 13 Si 0.988 3.012 14 H -0.267 1.267 15 H -0.288 1.288 16 H -0.267 1.267 17 C 0.246 3.754 18 C -0.136 4.136 19 C -0.115 4.115 20 C -0.149 4.149 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.136 4.136 25 C -0.142 4.142 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.266 0.734 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -0.518 -7.505 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.073 4.073 4 H 0.105 0.895 5 C -0.153 4.153 6 C 0.256 3.744 7 O -0.490 6.490 8 N -0.157 5.157 9 C -0.483 4.483 10 H 0.132 0.868 11 C -0.211 4.211 12 N -0.513 5.513 13 Si 0.812 3.188 14 H -0.192 1.192 15 H -0.214 1.214 16 H -0.192 1.192 17 C 0.155 3.845 18 C -0.156 4.156 19 C -0.134 4.134 20 C -0.167 4.167 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.193 4.193 25 C -0.199 4.199 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.091 -0.931 -7.379 7.517 hybrid contribution -0.724 0.878 0.798 1.390 sum 0.367 -0.052 -6.581 6.591 Atomic orbital electron populations 1.21797 0.95878 1.01238 1.01590 1.21804 0.95662 0.96874 1.02492 1.20925 0.95381 0.96032 0.94942 0.89525 1.21580 1.01008 1.00021 0.92712 1.20851 0.83749 0.85817 0.83973 1.90423 1.47325 1.26892 1.84315 1.41778 1.40669 1.27815 1.05460 1.20060 1.27528 1.06354 0.94347 0.86770 1.26069 0.98673 1.01135 0.95181 1.70047 1.41411 1.40608 0.99223 0.85061 0.78612 0.78211 0.76940 1.19216 1.21384 1.19222 1.17180 0.89630 0.90413 0.87324 1.20912 0.95625 0.99575 0.99462 1.20981 0.99862 0.96673 0.95837 1.21066 0.96638 0.97591 1.01405 1.20977 0.95824 1.00122 0.96646 1.20835 0.98337 0.97262 0.97686 1.21335 0.95543 0.96588 0.99145 1.21788 1.00778 1.00362 0.96385 1.21829 1.00604 0.96343 1.01141 0.93047 0.94124 0.91329 0.91337 0.92318 0.89522 0.89638 0.92332 0.89385 0.84987 0.84072 0.85214 0.90114 0.91861 0.93038 0.92867 0.91639 0.94626 0.93012 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.77 71.98 0.70 -3.44 16 2 C -0.13 -4.19 4.98 30.60 0.15 -4.04 16 3 C -0.05 -1.69 1.71 -10.79 -0.02 -1.71 16 4 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 5 C -0.11 -4.21 3.29 29.85 0.10 -4.11 16 6 C 0.46 21.64 6.96 87.66 0.61 22.25 16 7 O -0.60 -30.24 11.37 -3.04 -0.03 -30.27 16 8 N -0.44 -22.29 2.66 -458.90 -1.22 -23.51 16 9 C -0.36 -17.78 9.36 84.02 0.79 -16.99 16 10 H 0.11 5.21 6.32 -2.91 -0.02 5.20 16 11 C -0.01 -0.38 5.44 84.91 0.46 0.08 16 12 N -0.88 -45.77 9.45 21.65 0.20 -45.57 16 13 Si 0.99 39.59 29.56 68.60 2.03 41.62 16 14 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 15 H -0.29 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 C 0.25 12.56 2.20 38.22 0.08 12.64 16 18 C -0.14 -6.57 9.19 22.41 0.21 -6.36 16 19 C -0.12 -4.71 10.04 22.25 0.22 -4.49 16 20 C -0.15 -5.68 10.04 22.30 0.22 -5.46 16 21 C -0.12 -4.87 10.04 22.25 0.22 -4.65 16 22 C -0.12 -5.98 9.05 22.41 0.20 -5.77 16 23 C -0.11 -3.44 2.17 -10.79 -0.02 -3.46 16 24 C -0.14 -3.49 8.85 71.98 0.64 -2.85 16 25 C -0.14 -4.15 8.84 71.98 0.64 -3.51 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.25 6.35 -2.39 -0.02 1.23 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.94 6.14 -2.39 -0.01 1.92 16 30 H 0.06 2.37 5.43 -2.39 -0.01 2.36 16 31 H 0.09 3.12 6.34 -2.39 -0.02 3.11 16 32 H 0.09 3.07 6.13 -2.38 -0.01 3.05 16 33 H 0.27 13.55 8.32 -92.71 -0.77 12.78 16 34 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.08 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.06 2.59 5.51 -2.39 -0.01 2.57 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.37 6.31 -2.39 -0.02 1.36 16 42 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.03 1.17 6.49 -2.39 -0.02 1.16 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -59.93 346.92 7.15 -52.78 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.96 Total: 36.82 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.21 Total: -31.88 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.01 Total: -69.07 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.03 Total: -30.27 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -59.93 7.15 -52.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171742053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.705 kcal (2) G-P(sol) polarization free energy of solvation -59.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds