Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46749 * 2 1 4 4 H 1.09001 * 109.47292 * 307.59315 * 3 2 1 5 5 C 1.52997 * 109.47273 * 187.59287 * 3 2 1 6 6 C 1.50705 * 109.47158 * 66.99667 * 5 3 2 7 7 O 1.21275 * 119.99850 * 6.58148 * 6 5 3 8 8 N 1.34770 * 119.99792 * 186.58217 * 6 5 3 9 9 C 1.37134 * 120.00588 * 5.51507 * 8 6 5 10 10 H 1.07998 * 120.00393 * 300.35071 * 9 8 6 11 11 C 1.38891 * 119.99929 * 120.34141 * 9 8 6 12 12 N 1.31426 * 120.00214 * 177.48071 * 11 9 8 13 13 Si 1.86804 * 120.00150 * 357.48796 * 11 9 8 14 14 H 1.48500 * 109.47172 * 90.66831 * 13 11 9 15 15 H 1.48501 * 109.46996 * 210.67009 * 13 11 9 16 16 H 1.48501 * 109.46700 * 330.66762 * 13 11 9 17 17 C 1.39796 * 119.99710 * 185.51771 * 8 6 5 18 18 C 1.38963 * 120.07547 * 6.85080 * 17 8 6 19 19 C 1.38084 * 119.91550 * 179.79311 * 18 17 8 20 20 C 1.38306 * 120.08295 * 0.46342 * 19 18 17 21 21 C 1.38309 * 120.15395 * 359.79353 * 20 19 18 22 22 C 1.38085 * 120.07621 * 359.97246 * 21 20 19 23 23 C 1.53007 * 109.47152 * 67.59083 * 3 2 1 24 24 C 1.52993 * 109.46854 * 63.31114 * 23 3 2 25 25 C 1.53003 * 109.46869 * 183.30887 * 23 3 2 26 26 H 1.09000 * 109.47238 * 303.92424 * 1 2 3 27 27 H 1.08995 * 109.47114 * 63.93420 * 1 2 3 28 28 H 1.09000 * 109.46440 * 183.92845 * 1 2 3 29 29 H 1.08996 * 109.46804 * 240.00256 * 2 1 3 30 30 H 1.08998 * 109.47122 * 119.99520 * 2 1 3 31 31 H 1.08994 * 109.47250 * 186.99809 * 5 3 2 32 32 H 1.09001 * 109.46844 * 307.00105 * 5 3 2 33 33 H 0.96992 * 120.00304 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.04130 * 0.02562 * 18 17 8 35 35 H 1.08004 * 119.95690 * 180.25545 * 19 18 17 36 36 H 1.08001 * 119.92354 * 179.76747 * 20 19 18 37 37 H 1.08001 * 119.95968 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.03774 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47068 * 303.30712 * 23 3 2 40 40 H 1.08997 * 109.47849 * 65.03908 * 24 23 3 41 41 H 1.09001 * 109.47255 * 185.04410 * 24 23 3 42 42 H 1.09003 * 109.47153 * 305.03858 * 24 23 3 43 43 H 1.08996 * 109.47287 * 64.31195 * 25 23 3 44 44 H 1.09001 * 109.46366 * 184.31253 * 25 23 3 45 45 H 1.09003 * 109.46975 * 304.30547 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5700 1.9941 -0.8143 5 6 3.5580 1.4469 -0.1906 6 6 3.8920 0.9512 -1.5740 7 8 3.0046 0.7400 -2.3732 8 7 5.1769 0.7426 -1.9231 9 6 6.1713 0.8719 -0.9877 10 1 6.3162 1.8142 -0.4802 11 6 6.9921 -0.2090 -0.6927 12 7 7.9764 -0.0713 0.1672 13 14 6.6972 -1.8585 -1.5183 14 1 7.4909 -1.9339 -2.7711 15 1 7.1122 -2.9515 -0.6027 16 1 5.2539 -2.0012 -1.8373 17 6 5.4961 0.3943 -3.2388 18 6 4.5115 0.4014 -4.2194 19 6 4.8313 0.0610 -5.5189 20 6 6.1275 -0.2960 -5.8430 21 6 7.1089 -0.3092 -4.8685 22 6 6.7973 0.0347 -3.5679 23 6 1.6914 2.1067 1.3336 24 6 2.4175 1.3825 2.4690 25 6 2.1278 3.5728 1.3026 26 1 -0.3634 0.5735 0.8527 27 1 -0.3633 0.4515 -0.9231 28 1 -0.3632 -1.0253 0.0704 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.9368 2.4613 -0.0668 32 1 4.0191 0.7939 0.5504 33 1 8.5499 -0.8260 0.3730 34 1 3.4982 0.6764 -3.9663 35 1 4.0674 0.0702 -6.2824 36 1 6.3740 -0.5654 -6.8594 37 1 8.1200 -0.5889 -5.1250 38 1 7.5640 0.0237 -2.8073 39 1 0.6152 2.0513 1.4968 40 1 3.4934 1.5139 2.3546 41 1 2.1004 1.7972 3.4259 42 1 2.1757 0.3201 2.4356 43 1 1.5549 4.1064 0.5442 44 1 1.9496 4.0255 2.2780 45 1 3.1897 3.6309 1.0635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171742058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -9.813554 kcal Electronic energy + Delta-G solvation = -24334.667516 eV Core-core repulsion = 21124.230580 eV Total energy + Delta-G solvation = -3210.436935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18601 -38.31207 -36.90898 -35.09763 -32.26691 -32.04932 -30.31611 -30.10447 -28.44022 -26.97984 -25.32916 -24.42884 -21.98149 -21.94049 -21.34048 -19.51613 -18.49510 -17.80180 -16.50089 -15.80834 -15.67091 -14.95608 -14.70318 -14.64996 -13.89028 -13.70910 -13.51612 -13.34898 -13.03676 -13.01712 -12.80008 -12.56067 -12.37804 -12.16912 -11.97321 -11.77934 -11.43490 -11.32547 -11.09818 -11.00678 -10.93899 -10.71430 -10.57086 -10.23750 -10.01906 -9.97600 -9.91032 -9.81908 -9.44502 -8.98645 -8.37265 -8.00820 -6.99123 -6.54157 -4.55163 2.06677 2.17192 3.11725 3.22598 3.31622 3.58255 4.04754 4.19814 4.62099 4.80877 5.02739 5.08745 5.16610 5.49528 5.52579 5.59919 5.62790 5.66765 5.76546 5.82572 5.88407 5.91156 5.96605 5.98588 6.08937 6.18558 6.25061 6.28056 6.30155 6.33460 6.39966 6.42282 6.49478 6.52509 6.58526 6.70849 6.80348 6.84117 6.94127 7.18092 7.26090 7.31449 7.39497 7.74250 8.02896 8.17977 8.79032 9.08862 9.40659 10.47164 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.006349 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.274407 B = 4408.741623 C = 5232.975461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.068 4.068 4 H 0.075 0.925 5 C -0.118 4.118 6 C 0.503 3.497 7 O -0.557 6.557 8 N -0.415 5.415 9 C -0.364 4.364 10 H 0.107 0.893 11 C 0.081 3.919 12 N -0.860 5.860 13 Si 0.870 3.130 14 H -0.250 1.250 15 H -0.290 1.290 16 H -0.262 1.262 17 C 0.159 3.841 18 C -0.181 4.181 19 C -0.110 4.110 20 C -0.171 4.171 21 C -0.106 4.106 22 C -0.161 4.161 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.279 0.721 34 H 0.175 0.825 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 1.615 -0.038 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.087 4.087 4 H 0.093 0.907 5 C -0.158 4.158 6 C 0.296 3.704 7 O -0.441 6.441 8 N -0.125 5.125 9 C -0.490 4.490 10 H 0.124 0.876 11 C -0.128 4.128 12 N -0.493 5.493 13 Si 0.696 3.304 14 H -0.175 1.175 15 H -0.217 1.217 16 H -0.186 1.186 17 C 0.062 3.938 18 C -0.201 4.201 19 C -0.129 4.129 20 C -0.191 4.191 21 C -0.125 4.125 22 C -0.181 4.181 23 C -0.109 4.109 24 C -0.211 4.211 25 C -0.208 4.208 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.191 0.809 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.393 1.464 -0.201 8.522 hybrid contribution 0.411 -0.911 -0.318 1.048 sum -7.982 0.553 -0.518 8.018 Atomic orbital electron populations 1.21762 0.96595 1.00723 1.01295 1.21677 0.95253 0.96791 1.02520 1.20997 0.94571 0.96420 0.96679 0.90696 1.21579 0.95960 1.03173 0.95044 1.21107 0.81660 0.77843 0.89787 1.90235 1.47624 1.53909 1.52308 1.41495 1.06445 1.58880 1.05630 1.18953 1.11751 1.00051 1.18264 0.87600 1.25555 0.94589 0.98451 0.94230 1.69646 1.15859 1.32724 1.31053 0.87169 0.81021 0.82436 0.79759 1.17454 1.21673 1.18642 1.18578 0.93498 0.95915 0.85766 1.22594 1.02770 1.03009 0.91738 1.20991 0.95828 0.99902 0.96195 1.20895 0.93901 1.05724 0.98539 1.20802 0.98636 1.00233 0.92821 1.21176 0.96619 1.02879 0.97447 1.21147 0.99757 0.94865 0.95131 1.21976 1.01452 1.00434 0.97227 1.21927 1.02072 0.95864 1.00965 0.93098 0.92945 0.93552 0.90779 0.92326 0.89178 0.88235 0.91096 0.80882 0.87060 0.87436 0.87000 0.84397 0.91374 0.91767 0.93468 0.92409 0.93036 0.93170 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.79 37.16 0.36 -1.56 16 2 C -0.13 -1.96 5.10 -26.73 -0.14 -2.10 16 3 C -0.07 -1.05 1.26 -90.62 -0.11 -1.16 16 4 H 0.07 1.23 7.77 -51.93 -0.40 0.83 16 5 C -0.12 -2.16 3.33 -27.88 -0.09 -2.25 16 6 C 0.50 11.06 7.06 -10.99 -0.08 10.99 16 7 O -0.56 -12.56 10.90 5.56 0.06 -12.50 16 8 N -0.41 -9.94 2.13 -58.98 -0.13 -10.06 16 9 C -0.36 -9.16 7.93 -14.94 -0.12 -9.28 16 10 H 0.11 2.78 8.06 -52.49 -0.42 2.36 16 11 C 0.08 2.09 4.42 -17.48 -0.08 2.01 16 12 N -0.86 -22.86 13.96 55.49 0.77 -22.08 16 13 Si 0.87 20.88 23.92 -169.99 -4.07 16.81 16 14 H -0.25 -5.77 5.70 56.52 0.32 -5.44 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.70 7.08 56.52 0.40 -6.30 16 17 C 0.16 3.77 5.17 -83.69 -0.43 3.33 16 18 C -0.18 -3.98 8.99 -39.37 -0.35 -4.34 16 19 C -0.11 -2.10 10.04 -39.61 -0.40 -2.50 16 20 C -0.17 -3.13 10.04 -39.53 -0.40 -3.52 16 21 C -0.11 -2.11 9.85 -39.61 -0.39 -2.50 16 22 C -0.16 -3.68 5.67 -39.37 -0.22 -3.91 16 23 C -0.09 -1.17 2.58 -90.62 -0.23 -1.40 16 24 C -0.15 -1.97 8.45 37.15 0.31 -1.65 16 25 C -0.15 -1.84 9.03 37.16 0.34 -1.50 16 26 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.38 6.28 -51.93 -0.33 1.06 16 30 H 0.06 0.88 6.08 -51.93 -0.32 0.57 16 31 H 0.09 1.58 6.12 -51.93 -0.32 1.26 16 32 H 0.10 1.90 6.57 -51.93 -0.34 1.56 16 33 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.17 3.89 4.68 -55.42 -0.26 3.63 16 35 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.14 3.34 4.56 -52.48 -0.24 3.10 16 39 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 40 H 0.06 0.90 6.83 -51.93 -0.35 0.54 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.74 6.14 -51.93 -0.32 0.42 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -27.06 334.83 -7.23 -34.29 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.89 Total: 9.85 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.03 Total: -21.35 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.65 Total: -32.15 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.07 Total: 16.81 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.06 -7.23 -34.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171742058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds