Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46749 * 2 1 4 4 H 1.09001 * 109.47292 * 307.59315 * 3 2 1 5 5 C 1.52997 * 109.47273 * 187.59287 * 3 2 1 6 6 C 1.50705 * 109.47158 * 66.99667 * 5 3 2 7 7 O 1.21275 * 119.99850 * 6.58148 * 6 5 3 8 8 N 1.34770 * 119.99792 * 186.58217 * 6 5 3 9 9 C 1.37134 * 120.00588 * 5.51507 * 8 6 5 10 10 H 1.07998 * 120.00393 * 300.35071 * 9 8 6 11 11 C 1.38891 * 119.99929 * 120.34141 * 9 8 6 12 12 N 1.31426 * 120.00214 * 177.48071 * 11 9 8 13 13 Si 1.86804 * 120.00150 * 357.48796 * 11 9 8 14 14 H 1.48500 * 109.47172 * 90.66831 * 13 11 9 15 15 H 1.48501 * 109.46996 * 210.67009 * 13 11 9 16 16 H 1.48501 * 109.46700 * 330.66762 * 13 11 9 17 17 C 1.39796 * 119.99710 * 185.51771 * 8 6 5 18 18 C 1.38963 * 120.07547 * 6.85080 * 17 8 6 19 19 C 1.38084 * 119.91550 * 179.79311 * 18 17 8 20 20 C 1.38306 * 120.08295 * 0.46342 * 19 18 17 21 21 C 1.38309 * 120.15395 * 359.79353 * 20 19 18 22 22 C 1.38085 * 120.07621 * 359.97246 * 21 20 19 23 23 C 1.53007 * 109.47152 * 67.59083 * 3 2 1 24 24 C 1.52993 * 109.46854 * 63.31114 * 23 3 2 25 25 C 1.53003 * 109.46869 * 183.30887 * 23 3 2 26 26 H 1.09000 * 109.47238 * 303.92424 * 1 2 3 27 27 H 1.08995 * 109.47114 * 63.93420 * 1 2 3 28 28 H 1.09000 * 109.46440 * 183.92845 * 1 2 3 29 29 H 1.08996 * 109.46804 * 240.00256 * 2 1 3 30 30 H 1.08998 * 109.47122 * 119.99520 * 2 1 3 31 31 H 1.08994 * 109.47250 * 186.99809 * 5 3 2 32 32 H 1.09001 * 109.46844 * 307.00105 * 5 3 2 33 33 H 0.96992 * 120.00304 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.04130 * 0.02562 * 18 17 8 35 35 H 1.08004 * 119.95690 * 180.25545 * 19 18 17 36 36 H 1.08001 * 119.92354 * 179.76747 * 20 19 18 37 37 H 1.08001 * 119.95968 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.03774 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47068 * 303.30712 * 23 3 2 40 40 H 1.08997 * 109.47849 * 65.03908 * 24 23 3 41 41 H 1.09001 * 109.47255 * 185.04410 * 24 23 3 42 42 H 1.09003 * 109.47153 * 305.03858 * 24 23 3 43 43 H 1.08996 * 109.47287 * 64.31195 * 25 23 3 44 44 H 1.09001 * 109.46366 * 184.31253 * 25 23 3 45 45 H 1.09003 * 109.46975 * 304.30547 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5700 1.9941 -0.8143 5 6 3.5580 1.4469 -0.1906 6 6 3.8920 0.9512 -1.5740 7 8 3.0046 0.7400 -2.3732 8 7 5.1769 0.7426 -1.9231 9 6 6.1713 0.8719 -0.9877 10 1 6.3162 1.8142 -0.4802 11 6 6.9921 -0.2090 -0.6927 12 7 7.9764 -0.0713 0.1672 13 14 6.6972 -1.8585 -1.5183 14 1 7.4909 -1.9339 -2.7711 15 1 7.1122 -2.9515 -0.6027 16 1 5.2539 -2.0012 -1.8373 17 6 5.4961 0.3943 -3.2388 18 6 4.5115 0.4014 -4.2194 19 6 4.8313 0.0610 -5.5189 20 6 6.1275 -0.2960 -5.8430 21 6 7.1089 -0.3092 -4.8685 22 6 6.7973 0.0347 -3.5679 23 6 1.6914 2.1067 1.3336 24 6 2.4175 1.3825 2.4690 25 6 2.1278 3.5728 1.3026 26 1 -0.3634 0.5735 0.8527 27 1 -0.3633 0.4515 -0.9231 28 1 -0.3632 -1.0253 0.0704 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.9368 2.4613 -0.0668 32 1 4.0191 0.7939 0.5504 33 1 8.5499 -0.8260 0.3730 34 1 3.4982 0.6764 -3.9663 35 1 4.0674 0.0702 -6.2824 36 1 6.3740 -0.5654 -6.8594 37 1 8.1200 -0.5889 -5.1250 38 1 7.5640 0.0237 -2.8073 39 1 0.6152 2.0513 1.4968 40 1 3.4934 1.5139 2.3546 41 1 2.1004 1.7972 3.4259 42 1 2.1757 0.3201 2.4356 43 1 1.5549 4.1064 0.5442 44 1 1.9496 4.0255 2.2780 45 1 3.1897 3.6309 1.0635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171742058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -22.586681 kcal Electronic energy + Delta-G solvation = -24335.221400 eV Core-core repulsion = 21124.230580 eV Total energy + Delta-G solvation = -3210.990820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88192 -39.75658 -38.34507 -36.89014 -34.19041 -33.20597 -31.84940 -31.69882 -29.95493 -27.99341 -27.20258 -25.78998 -23.54677 -23.13462 -22.94542 -21.27206 -20.12670 -19.22282 -18.12610 -17.63690 -17.26134 -16.57193 -16.26256 -15.85296 -15.61205 -15.12956 -15.00504 -14.88591 -14.69791 -14.45143 -14.24725 -13.95379 -13.75703 -13.66945 -13.53223 -13.15396 -12.85652 -12.66413 -12.50169 -12.45272 -12.27585 -12.14873 -12.08018 -11.82392 -11.68907 -11.34440 -11.19730 -11.13076 -11.01072 -10.85450 -10.07531 -9.64495 -8.80217 -8.49435 -6.56138 0.43934 0.53837 1.19137 1.26663 1.34995 1.85827 2.09641 2.51448 2.71733 3.08086 3.79133 3.88778 3.94641 4.10392 4.17694 4.27106 4.36982 4.37719 4.45697 4.53279 4.63353 4.66598 4.72912 4.79673 4.83476 4.86209 4.89538 4.92904 4.99481 5.09997 5.18241 5.21328 5.21931 5.24918 5.37419 5.40294 5.49118 5.54565 5.59516 5.61742 5.67448 5.69288 5.73718 5.99474 6.04686 6.40076 6.83267 7.23832 7.57681 8.49476 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.006349 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.274407 B = 4408.741623 C = 5232.975461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C -0.060 4.060 4 H 0.066 0.934 5 C -0.110 4.110 6 C 0.493 3.507 7 O -0.565 6.565 8 N -0.430 5.430 9 C -0.354 4.354 10 H 0.085 0.915 11 C 0.057 3.943 12 N -0.890 5.890 13 Si 0.914 3.086 14 H -0.234 1.234 15 H -0.287 1.287 16 H -0.289 1.289 17 C 0.127 3.873 18 C -0.200 4.200 19 C -0.104 4.104 20 C -0.157 4.157 21 C -0.108 4.108 22 C -0.186 4.186 23 C -0.083 4.083 24 C -0.153 4.153 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.283 0.717 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 1.320 -1.252 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.079 4.079 4 H 0.084 0.916 5 C -0.149 4.149 6 C 0.287 3.713 7 O -0.449 6.449 8 N -0.141 5.141 9 C -0.481 4.481 10 H 0.103 0.897 11 C -0.150 4.150 12 N -0.525 5.525 13 Si 0.741 3.259 14 H -0.158 1.158 15 H -0.214 1.214 16 H -0.215 1.215 17 C 0.031 3.969 18 C -0.220 4.220 19 C -0.123 4.123 20 C -0.176 4.176 21 C -0.126 4.126 22 C -0.207 4.207 23 C -0.102 4.102 24 C -0.210 4.210 25 C -0.208 4.208 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.454 1.172 -1.429 9.633 hybrid contribution 0.719 -0.774 -0.064 1.058 sum -8.735 0.398 -1.492 8.871 Atomic orbital electron populations 1.21708 0.94216 1.01740 1.02021 1.21641 0.97349 0.96396 1.00858 1.20964 0.92090 0.96659 0.98185 0.91572 1.21595 0.98205 1.02709 0.92439 1.21712 0.81120 0.77426 0.91044 1.90220 1.47566 1.54163 1.52941 1.41613 1.06668 1.59870 1.05942 1.18741 1.11953 0.99161 1.18247 0.89700 1.25895 0.94464 1.00148 0.94468 1.69690 1.16847 1.33590 1.32346 0.86511 0.79214 0.80322 0.79879 1.15752 1.21363 1.21478 1.18888 0.94583 0.97493 0.85927 1.22634 1.02053 1.04295 0.93034 1.21418 0.97376 0.97950 0.95511 1.21376 0.92805 1.03243 1.00176 1.21213 1.00608 0.99016 0.91783 1.21183 0.95837 1.04985 0.98675 1.21122 1.00914 0.94927 0.93198 1.21966 1.00249 1.00525 0.98263 1.21919 1.01078 0.95525 1.02239 0.90960 0.93342 0.92662 0.94450 0.91988 0.88816 0.89457 0.90662 0.81945 0.83495 0.82903 0.84202 0.86449 0.89295 0.93684 0.91357 0.92584 0.92493 0.91294 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.79 71.98 0.70 -2.76 16 2 C -0.13 -3.94 5.10 30.60 0.16 -3.78 16 3 C -0.06 -1.87 1.26 -10.79 -0.01 -1.88 16 4 H 0.07 2.18 7.77 -2.39 -0.02 2.16 16 5 C -0.11 -4.20 3.33 29.85 0.10 -4.10 16 6 C 0.49 22.64 7.06 87.66 0.62 23.26 16 7 O -0.57 -26.39 10.90 -3.01 -0.03 -26.42 16 8 N -0.43 -21.43 2.13 -458.91 -0.98 -22.41 16 9 C -0.35 -18.66 7.93 84.02 0.67 -17.99 16 10 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 11 C 0.06 3.02 4.42 84.91 0.38 3.39 16 12 N -0.89 -48.60 13.96 21.65 0.30 -48.30 16 13 Si 0.91 44.13 23.92 68.60 1.64 45.77 16 14 H -0.23 -10.54 5.70 99.48 0.57 -9.98 16 15 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.29 -15.12 7.08 99.48 0.70 -14.42 16 17 C 0.13 6.10 5.17 38.22 0.20 6.30 16 18 C -0.20 -8.75 8.99 22.41 0.20 -8.55 16 19 C -0.10 -3.67 10.04 22.25 0.22 -3.44 16 20 C -0.16 -5.11 10.04 22.30 0.22 -4.88 16 21 C -0.11 -4.01 9.85 22.25 0.22 -3.79 16 22 C -0.19 -8.50 5.67 22.41 0.13 -8.37 16 23 C -0.08 -2.03 2.58 -10.79 -0.03 -2.06 16 24 C -0.15 -3.75 8.45 71.98 0.61 -3.15 16 25 C -0.15 -3.47 9.03 71.98 0.65 -2.82 16 26 H 0.07 1.48 6.43 -2.39 -0.02 1.47 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.44 6.28 -2.39 -0.01 1.43 16 30 H 0.06 1.88 6.08 -2.39 -0.01 1.86 16 31 H 0.09 3.45 6.12 -2.39 -0.01 3.44 16 32 H 0.09 3.53 6.57 -2.39 -0.02 3.51 16 33 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.16 7.42 4.68 -49.37 -0.23 7.19 16 35 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.12 5.79 4.56 -2.91 -0.01 5.78 16 39 H 0.09 1.85 6.44 -2.39 -0.02 1.84 16 40 H 0.04 1.27 6.83 -2.39 -0.02 1.25 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.38 6.14 -2.39 -0.01 1.37 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.20 6.18 -2.39 -0.01 1.19 16 Total: -1.00 -60.48 334.83 6.58 -53.90 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.62 Total: 32.09 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 5.03 Total: -34.63 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -0.67 Total: -70.71 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.03 Total: -26.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.64 Total: 45.77 kcal Total: -60.48 6.58 -53.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171742058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.311 kcal (2) G-P(sol) polarization free energy of solvation -60.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds