Wall clock time and date at job start Tue Mar 31 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 H 1.08995 * 109.47053 * 305.00463 * 3 2 1 5 5 C 1.53004 * 109.46889 * 65.00316 * 3 2 1 6 6 C 1.52998 * 109.46965 * 185.00111 * 3 2 1 7 7 N 1.46507 * 109.46662 * 175.00096 * 6 3 2 8 8 C 1.46498 * 120.00052 * 269.99479 * 7 6 3 9 9 C 1.52994 * 109.47411 * 279.23554 * 8 7 6 10 10 C 1.34778 * 119.99800 * 90.00298 * 7 6 3 11 11 O 1.21545 * 119.99989 * 358.43022 * 10 7 6 12 12 C 1.47888 * 119.99639 * 178.43022 * 10 7 6 13 13 C 1.39923 * 120.02418 * 310.46536 * 12 10 7 14 14 C 1.38329 * 120.35573 * 180.25790 * 13 12 10 15 15 C 1.37755 * 120.41287 * 0.04257 * 14 13 12 16 16 C 1.40754 * 120.03733 * 359.95988 * 15 14 13 17 17 C 1.41442 * 120.17379 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99714 * 330.55679 * 17 16 15 19 19 C 1.39930 * 119.99836 * 150.55911 * 17 16 15 20 20 N 1.30830 * 119.99952 * 348.57994 * 19 17 16 21 21 Si 1.86801 * 120.00080 * 168.58491 * 19 17 16 22 22 H 1.48495 * 109.47318 * 89.99593 * 21 19 17 23 23 H 1.48501 * 109.47261 * 210.00136 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99563 * 21 19 17 25 25 C 1.38989 * 120.02240 * 130.75035 * 12 10 7 26 26 H 1.08996 * 109.47381 * 59.99802 * 1 2 3 27 27 H 1.09004 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46885 * 299.99841 * 1 2 3 29 29 H 1.09004 * 109.46616 * 240.00463 * 2 1 3 30 30 H 1.08997 * 109.46658 * 120.00378 * 2 1 3 31 31 H 1.08998 * 109.46933 * 59.99736 * 5 3 2 32 32 H 1.09004 * 109.46963 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46983 * 299.99454 * 5 3 2 34 34 H 1.08999 * 109.46780 * 55.00448 * 6 3 2 35 35 H 1.08995 * 109.46904 * 294.99927 * 6 3 2 36 36 H 1.09010 * 109.46793 * 39.23447 * 8 7 6 37 37 H 1.09003 * 109.46974 * 159.22948 * 8 7 6 38 38 H 1.09002 * 109.46894 * 200.33831 * 9 8 7 39 39 H 1.08994 * 109.47257 * 320.33634 * 9 8 7 40 40 H 1.09009 * 109.47174 * 80.34048 * 9 8 7 41 41 H 1.07995 * 119.82042 * 0.27945 * 13 12 10 42 42 H 1.08002 * 119.79421 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.97968 * 179.97438 * 15 14 13 44 44 H 0.97010 * 119.99901 * 179.97438 * 20 19 17 45 45 H 1.07999 * 120.20467 * 359.69444 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5649 1.4442 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 4.1785 3.4397 -1.5681 9 6 5.4913 2.9865 -2.2100 10 6 4.3590 3.5262 0.8603 11 8 4.2199 3.0249 1.9588 12 6 4.8749 4.9067 0.7373 13 6 5.9261 5.1855 -0.1430 14 6 6.4175 6.4733 -0.2596 15 6 5.8785 7.4958 0.4898 16 6 4.8206 7.2344 1.3807 17 6 4.2647 8.2822 2.1513 18 1 4.8777 9.1225 2.4420 19 6 2.9206 8.2300 2.5369 20 7 2.1223 7.3392 2.0071 21 14 2.2662 9.4323 3.8079 22 1 1.7651 10.6515 3.1242 23 1 1.1571 8.7978 4.5646 24 1 3.3563 9.8034 4.7457 25 6 4.3197 5.9271 1.5005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.0700 1.5873 2.1492 32 1 1.9983 3.1543 1.3073 33 1 0.5489 2.1252 1.3970 34 1 3.8570 0.8800 -1.0114 35 1 4.0029 0.9835 0.7596 36 1 3.3422 3.1357 -2.1978 37 1 4.1800 4.5248 -1.4650 38 1 5.7732 3.6883 -2.9949 39 1 6.2743 2.9552 -1.4524 40 1 5.3617 1.9933 -2.6400 41 1 6.3559 4.3910 -0.7349 42 1 7.2289 6.6784 -0.9423 43 1 6.2678 8.4986 0.3936 44 1 1.1905 7.3027 2.2747 45 1 3.5080 5.7165 2.1810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176645756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:20 Heat of formation + Delta-G solvation = -34.946978 kcal Electronic energy + Delta-G solvation = -23785.493357 eV Core-core repulsion = 20573.966554 eV Total energy + Delta-G solvation = -3211.526802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.77422 -37.33875 -36.30107 -35.10675 -33.60933 -31.01558 -30.02342 -29.52951 -28.93082 -26.57084 -25.31081 -23.68499 -23.16536 -21.49008 -20.96399 -19.76959 -18.55825 -17.43683 -16.13637 -16.04309 -15.27395 -15.00797 -14.89235 -14.77003 -13.83739 -13.82101 -13.44256 -13.31343 -13.02912 -12.71794 -12.60306 -12.47713 -12.13608 -11.82925 -11.73688 -11.63069 -11.52269 -11.22391 -11.15645 -11.10409 -10.86033 -10.73311 -10.57047 -10.43303 -10.39868 -10.37016 -10.02621 -9.62885 -9.24128 -8.92391 -8.19859 -7.56743 -7.43582 -6.75241 -4.42194 2.39910 2.82905 3.08318 3.11579 3.15884 3.46012 3.71303 3.93802 4.61236 4.91979 4.94799 5.05844 5.20491 5.24896 5.43676 5.50062 5.57516 5.61422 5.68458 5.72354 5.77210 5.85581 5.95009 5.99241 6.09469 6.12794 6.15557 6.18368 6.22667 6.29016 6.35709 6.51763 6.56983 6.70847 6.82712 6.99992 7.01294 7.10118 7.23481 7.41002 7.70457 7.82524 7.89373 8.02350 8.18330 8.51808 8.83296 8.84683 8.91149 10.20041 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.005373 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.240779 B = 5210.048739 C = 6684.221561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.106 4.106 4 H 0.067 0.933 5 C -0.139 4.139 6 C 0.122 3.878 7 N -0.612 5.612 8 C 0.104 3.896 9 C -0.169 4.169 10 C 0.572 3.428 11 O -0.544 6.544 12 C -0.122 4.122 13 C -0.219 4.219 14 C -0.101 4.101 15 C -0.209 4.209 16 C 0.103 3.897 17 C -0.463 4.463 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.800 5.800 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.098 4.098 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.281 0.719 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -9.805 -7.107 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.126 4.126 4 H 0.086 0.914 5 C -0.196 4.196 6 C -0.001 4.001 7 N -0.345 5.345 8 C -0.019 4.019 9 C -0.227 4.227 10 C 0.363 3.637 11 O -0.422 6.422 12 C -0.125 4.125 13 C -0.239 4.239 14 C -0.120 4.120 15 C -0.228 4.228 16 C 0.101 3.899 17 C -0.493 4.493 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.426 5.426 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.118 4.118 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.509 -10.146 -6.509 12.148 hybrid contribution -0.428 0.569 0.345 0.791 sum -1.937 -9.576 -6.164 11.552 Atomic orbital electron populations 1.21798 0.95953 1.01081 1.02072 1.21502 0.95935 0.96312 1.01635 1.21560 0.95738 0.95893 0.99382 0.91436 1.21831 0.99732 1.01779 0.96283 1.21418 0.93532 0.83105 1.02061 1.47908 1.66511 1.13479 1.06640 1.21616 0.96801 1.00452 0.83056 1.22339 0.98461 1.00848 1.01054 1.18925 0.75518 0.86079 0.83198 1.90685 1.54032 1.71125 1.26322 1.19448 0.99915 0.91616 1.01494 1.20768 1.01879 0.96695 1.04551 1.20456 0.98918 0.93245 0.99346 1.21161 1.03370 0.97299 1.01019 1.17557 0.90344 0.92094 0.89898 1.19550 0.95048 1.05576 1.29151 0.90287 1.25883 0.97026 0.95961 0.95441 1.69757 1.06091 1.31066 1.35679 0.86270 0.79064 0.80347 0.80813 1.19518 1.20100 1.18488 1.21450 1.00801 0.90934 0.98622 0.92931 0.93157 0.92340 0.92344 0.91959 0.92535 0.91912 0.93656 0.91370 0.90316 0.91671 0.88334 0.91640 0.91561 0.93276 0.87753 0.88966 0.88699 0.90813 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.16 0.36 -1.20 16 2 C -0.12 -1.27 5.40 -26.73 -0.14 -1.42 16 3 C -0.11 -1.45 2.59 -90.62 -0.24 -1.69 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.14 -2.31 7.67 37.16 0.28 -2.03 16 6 C 0.12 1.76 5.00 -4.04 -0.02 1.74 16 7 N -0.61 -10.44 2.36 -174.78 -0.41 -10.85 16 8 C 0.10 1.53 5.60 -4.05 -0.02 1.51 16 9 C -0.17 -2.09 9.05 37.15 0.34 -1.75 16 10 C 0.57 12.34 5.85 -12.31 -0.07 12.27 16 11 O -0.54 -13.09 14.69 5.33 0.08 -13.02 16 12 C -0.12 -2.83 4.74 -105.04 -0.50 -3.33 16 13 C -0.22 -4.58 7.69 -38.92 -0.30 -4.88 16 14 C -0.10 -2.14 10.01 -39.72 -0.40 -2.54 16 15 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 16 C 0.10 2.71 5.54 -106.87 -0.59 2.12 16 17 C -0.46 -12.18 9.06 -37.73 -0.34 -12.52 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.86 5.23 -17.34 -0.09 1.77 16 20 N -0.80 -20.79 10.92 55.55 0.61 -20.18 16 21 Si 0.91 18.88 29.57 -169.99 -5.03 13.85 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 25 C -0.10 -2.57 8.32 -38.45 -0.32 -2.89 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 32 H 0.06 1.28 6.03 -51.93 -0.31 0.97 16 33 H 0.04 0.68 6.57 -51.93 -0.34 0.34 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.08 1.25 7.44 -51.93 -0.39 0.86 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.10 1.70 5.68 -51.93 -0.29 1.41 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 40 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.10 1.89 4.22 -52.49 -0.22 1.67 16 42 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 45 H 0.13 3.55 6.30 -52.49 -0.33 3.22 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -28.25 352.48 -9.03 -37.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.16 Total: 7.73 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.43 Total: -20.12 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.19 Total: -31.03 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.25 -9.03 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176645756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.337 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds