Wall clock time and date at job start Tue Mar 31 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47173 * 2 1 4 4 H 1.08995 * 109.47053 * 305.00463 * 3 2 1 5 5 C 1.53004 * 109.46889 * 65.00316 * 3 2 1 6 6 C 1.52998 * 109.46965 * 185.00111 * 3 2 1 7 7 N 1.46507 * 109.46662 * 175.00096 * 6 3 2 8 8 C 1.46498 * 120.00052 * 269.99479 * 7 6 3 9 9 C 1.52994 * 109.47411 * 279.23554 * 8 7 6 10 10 C 1.34778 * 119.99800 * 90.00298 * 7 6 3 11 11 O 1.21545 * 119.99989 * 358.43022 * 10 7 6 12 12 C 1.47888 * 119.99639 * 178.43022 * 10 7 6 13 13 C 1.39923 * 120.02418 * 310.46536 * 12 10 7 14 14 C 1.38329 * 120.35573 * 180.25790 * 13 12 10 15 15 C 1.37755 * 120.41287 * 0.04257 * 14 13 12 16 16 C 1.40754 * 120.03733 * 359.95988 * 15 14 13 17 17 C 1.41442 * 120.17379 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99714 * 330.55679 * 17 16 15 19 19 C 1.39930 * 119.99836 * 150.55911 * 17 16 15 20 20 N 1.30830 * 119.99952 * 348.57994 * 19 17 16 21 21 Si 1.86801 * 120.00080 * 168.58491 * 19 17 16 22 22 H 1.48495 * 109.47318 * 89.99593 * 21 19 17 23 23 H 1.48501 * 109.47261 * 210.00136 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99563 * 21 19 17 25 25 C 1.38989 * 120.02240 * 130.75035 * 12 10 7 26 26 H 1.08996 * 109.47381 * 59.99802 * 1 2 3 27 27 H 1.09004 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46885 * 299.99841 * 1 2 3 29 29 H 1.09004 * 109.46616 * 240.00463 * 2 1 3 30 30 H 1.08997 * 109.46658 * 120.00378 * 2 1 3 31 31 H 1.08998 * 109.46933 * 59.99736 * 5 3 2 32 32 H 1.09004 * 109.46963 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46983 * 299.99454 * 5 3 2 34 34 H 1.08999 * 109.46780 * 55.00448 * 6 3 2 35 35 H 1.08995 * 109.46904 * 294.99927 * 6 3 2 36 36 H 1.09010 * 109.46793 * 39.23447 * 8 7 6 37 37 H 1.09003 * 109.46974 * 159.22948 * 8 7 6 38 38 H 1.09002 * 109.46894 * 200.33831 * 9 8 7 39 39 H 1.08994 * 109.47257 * 320.33634 * 9 8 7 40 40 H 1.09009 * 109.47174 * 80.34048 * 9 8 7 41 41 H 1.07995 * 119.82042 * 0.27945 * 13 12 10 42 42 H 1.08002 * 119.79421 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.97968 * 179.97438 * 15 14 13 44 44 H 0.97010 * 119.99901 * 179.97438 * 20 19 17 45 45 H 1.07999 * 120.20467 * 359.69444 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5649 1.4442 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 4.1785 3.4397 -1.5681 9 6 5.4913 2.9865 -2.2100 10 6 4.3590 3.5262 0.8603 11 8 4.2199 3.0249 1.9588 12 6 4.8749 4.9067 0.7373 13 6 5.9261 5.1855 -0.1430 14 6 6.4175 6.4733 -0.2596 15 6 5.8785 7.4958 0.4898 16 6 4.8206 7.2344 1.3807 17 6 4.2647 8.2822 2.1513 18 1 4.8777 9.1225 2.4420 19 6 2.9206 8.2300 2.5369 20 7 2.1223 7.3392 2.0071 21 14 2.2662 9.4323 3.8079 22 1 1.7651 10.6515 3.1242 23 1 1.1571 8.7978 4.5646 24 1 3.3563 9.8034 4.7457 25 6 4.3197 5.9271 1.5005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.0700 1.5873 2.1492 32 1 1.9983 3.1543 1.3073 33 1 0.5489 2.1252 1.3970 34 1 3.8570 0.8800 -1.0114 35 1 4.0029 0.9835 0.7596 36 1 3.3422 3.1357 -2.1978 37 1 4.1800 4.5248 -1.4650 38 1 5.7732 3.6883 -2.9949 39 1 6.2743 2.9552 -1.4524 40 1 5.3617 1.9933 -2.6400 41 1 6.3559 4.3910 -0.7349 42 1 7.2289 6.6784 -0.9423 43 1 6.2678 8.4986 0.3936 44 1 1.1905 7.3027 2.2747 45 1 3.5080 5.7165 2.1810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176645756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:20 Heat of formation + Delta-G solvation = -48.650170 kcal Electronic energy + Delta-G solvation = -23786.087572 eV Core-core repulsion = 20573.966554 eV Total energy + Delta-G solvation = -3212.121017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32962 -39.03054 -37.73186 -36.43983 -35.42931 -32.33530 -31.58783 -31.30932 -30.15786 -27.95001 -27.18275 -24.92055 -24.40351 -22.97299 -22.79395 -20.96735 -20.12171 -19.12910 -17.79173 -17.60299 -16.79407 -16.67602 -16.42563 -15.89467 -15.42932 -15.22890 -14.76149 -14.68604 -14.39111 -14.21208 -14.17598 -13.86916 -13.47917 -13.33143 -13.06010 -12.88626 -12.83990 -12.78688 -12.77558 -12.43293 -12.23871 -12.08805 -12.03541 -11.87353 -11.74753 -11.56422 -11.43231 -11.37929 -11.09442 -10.64192 -9.61208 -9.37724 -9.31409 -8.62423 -6.39854 0.58330 1.01956 1.35299 1.45486 1.49985 1.87960 2.17450 2.20646 2.75672 3.64819 3.71589 3.87322 3.97467 4.00640 4.16494 4.36398 4.39632 4.48511 4.53356 4.54787 4.63331 4.71718 4.74284 4.77877 4.86387 4.91186 4.95138 5.04310 5.07789 5.10707 5.15049 5.20103 5.21509 5.24757 5.32624 5.41483 5.47809 5.50218 5.53869 5.74646 5.88903 5.98819 6.04823 6.29582 6.42070 6.62524 6.90386 6.94990 7.28342 8.34303 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.005373 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.240779 B = 5210.048739 C = 6684.221561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.100 4.100 4 H 0.072 0.928 5 C -0.132 4.132 6 C 0.118 3.882 7 N -0.601 5.601 8 C 0.097 3.903 9 C -0.161 4.161 10 C 0.565 3.435 11 O -0.582 6.582 12 C -0.129 4.129 13 C -0.200 4.200 14 C -0.097 4.097 15 C -0.216 4.216 16 C 0.072 3.928 17 C -0.502 4.502 18 H 0.080 0.920 19 C 0.030 3.970 20 N -0.835 5.835 21 Si 0.981 3.019 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.132 4.132 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.016 0.984 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.283 0.717 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -11.285 -9.762 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.119 4.119 4 H 0.090 0.910 5 C -0.189 4.189 6 C -0.003 4.003 7 N -0.332 5.332 8 C -0.025 4.025 9 C -0.219 4.219 10 C 0.355 3.645 11 O -0.464 6.464 12 C -0.132 4.132 13 C -0.219 4.219 14 C -0.115 4.115 15 C -0.236 4.236 16 C 0.070 3.930 17 C -0.532 4.532 18 H 0.098 0.902 19 C -0.183 4.183 20 N -0.462 5.462 21 Si 0.802 3.198 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.787 -11.640 -9.222 14.871 hybrid contribution -0.582 0.918 1.038 1.503 sum -1.369 -10.721 -8.184 13.558 Atomic orbital electron populations 1.21799 0.95408 1.02125 1.01590 1.21462 0.96349 0.94037 1.02815 1.21530 0.95369 0.97694 0.97305 0.90982 1.21740 1.00120 0.99108 0.97963 1.21676 0.93767 0.81587 1.03316 1.47941 1.64746 1.14211 1.06301 1.21830 0.99768 0.98784 0.82133 1.22266 0.95928 1.02912 1.00816 1.18799 0.75896 0.85829 0.83955 1.90654 1.55906 1.71773 1.28020 1.19746 1.00271 0.92098 1.01054 1.21204 0.99981 0.97790 1.02937 1.20911 0.99256 0.92426 0.98892 1.21431 1.02626 0.98807 1.00748 1.17886 0.91752 0.92168 0.91169 1.19823 0.96051 1.06199 1.31116 0.90200 1.26742 0.96899 0.97653 0.96980 1.69862 1.06373 1.32829 1.37148 0.85218 0.78292 0.78228 0.78095 1.18152 1.19786 1.18169 1.21223 1.01515 0.92285 1.00195 0.92484 0.91371 0.93791 0.89654 0.92239 0.94062 0.96476 0.92620 0.87093 0.91959 0.88912 0.91283 0.89910 0.92998 0.90505 0.84264 0.84564 0.87505 0.90628 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.10 5.40 30.59 0.17 -1.93 16 3 C -0.10 -2.59 2.59 -10.79 -0.03 -2.62 16 4 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 5 C -0.13 -4.58 7.67 71.98 0.55 -4.03 16 6 C 0.12 3.18 5.00 86.38 0.43 3.62 16 7 N -0.60 -19.93 2.36 -825.17 -1.95 -21.88 16 8 C 0.10 2.61 5.60 86.38 0.48 3.10 16 9 C -0.16 -3.28 9.05 71.98 0.65 -2.63 16 10 C 0.56 25.14 5.85 86.80 0.51 25.65 16 11 O -0.58 -29.66 14.69 -3.86 -0.06 -29.71 16 12 C -0.13 -6.16 4.74 -20.13 -0.10 -6.26 16 13 C -0.20 -8.09 7.69 22.70 0.17 -7.91 16 14 C -0.10 -3.90 10.01 22.18 0.22 -3.68 16 15 C -0.22 -10.25 9.78 22.77 0.22 -10.03 16 16 C 0.07 3.98 5.54 -21.32 -0.12 3.86 16 17 C -0.50 -27.76 9.06 23.47 0.21 -27.55 16 18 H 0.08 4.20 7.87 -2.91 -0.02 4.18 16 19 C 0.03 1.61 5.23 85.25 0.45 2.05 16 20 N -0.84 -46.30 10.92 21.82 0.24 -46.06 16 21 Si 0.98 40.24 29.57 68.60 2.03 42.27 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 C -0.13 -7.36 8.32 23.01 0.19 -7.17 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 0.92 6.56 -2.39 -0.02 0.90 16 29 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.51 7.97 -2.39 -0.02 1.49 16 32 H 0.02 0.72 6.03 -2.38 -0.01 0.70 16 33 H 0.05 1.75 6.57 -2.38 -0.02 1.73 16 34 H 0.11 2.08 8.07 -2.39 -0.02 2.06 16 35 H 0.06 1.92 7.44 -2.39 -0.02 1.90 16 36 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.30 5.68 -2.39 -0.01 2.29 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.22 6.17 -2.39 -0.01 1.21 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.14 4.63 4.22 -2.91 -0.01 4.61 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.28 14.48 8.30 -92.70 -0.77 13.71 16 45 H 0.09 5.54 6.30 -2.91 -0.02 5.52 16 Total: -1.00 -67.95 352.48 5.94 -62.01 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.97 Total: 30.99 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 4.71 Total: -37.62 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.71 Total: -67.94 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.95 5.94 -62.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176645756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.360 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds