Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 H 1.09002 * 109.47466 * 55.00277 * 3 2 1 5 5 C 1.52999 * 109.47559 * 295.00235 * 3 2 1 6 6 C 1.52999 * 109.46939 * 175.00066 * 3 2 1 7 7 N 1.46500 * 109.47370 * 185.00369 * 6 3 2 8 8 C 1.46507 * 119.99819 * 270.00108 * 7 6 3 9 9 C 1.52995 * 109.46812 * 286.72942 * 8 7 6 10 10 C 1.34774 * 120.00190 * 89.99498 * 7 6 3 11 11 O 1.21550 * 120.00232 * 357.20407 * 10 7 6 12 12 C 1.47894 * 119.99962 * 177.47812 * 10 7 6 13 13 C 1.39911 * 120.02305 * 331.62820 * 12 10 7 14 14 C 1.38334 * 120.35367 * 179.71338 * 13 12 10 15 15 C 1.37747 * 120.41354 * 0.56763 * 14 13 12 16 16 C 1.40751 * 120.03987 * 359.71559 * 15 14 13 17 17 C 1.41438 * 120.17765 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99848 * 325.66261 * 17 16 15 19 19 C 1.39936 * 119.99910 * 145.67246 * 17 16 15 20 20 N 1.30828 * 120.00225 * 3.31437 * 19 17 16 21 21 Si 1.86801 * 119.99627 * 183.31646 * 19 17 16 22 22 H 1.48496 * 109.47374 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46970 * 119.99833 * 21 19 17 24 24 H 1.48499 * 109.47075 * 239.99427 * 21 19 17 25 25 C 1.38993 * 120.02444 * 151.90735 * 12 10 7 26 26 H 1.08997 * 109.47498 * 299.99733 * 1 2 3 27 27 H 1.09005 * 109.47159 * 59.99827 * 1 2 3 28 28 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46642 * 240.00266 * 2 1 3 30 30 H 1.08996 * 109.46974 * 120.00028 * 2 1 3 31 31 H 1.09006 * 109.47347 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46892 * 299.99958 * 5 3 2 33 33 H 1.08995 * 109.47384 * 59.99946 * 5 3 2 34 34 H 1.08998 * 109.47189 * 65.00218 * 6 3 2 35 35 H 1.09000 * 109.46942 * 305.00142 * 6 3 2 36 36 H 1.09003 * 109.46929 * 46.73260 * 8 7 6 37 37 H 1.09001 * 109.46851 * 166.73412 * 8 7 6 38 38 H 1.09005 * 109.47267 * 60.00132 * 9 8 7 39 39 H 1.09003 * 109.46713 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.47633 * 299.99887 * 9 8 7 41 41 H 1.07998 * 119.82532 * 359.97438 * 13 12 10 42 42 H 1.08002 * 119.79072 * 180.27732 * 14 13 12 43 43 H 1.08002 * 119.97922 * 179.69653 * 15 14 13 44 44 H 0.96994 * 120.00102 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.19934 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0432 2.8238 0.2459 8 6 4.3864 3.5874 -0.9564 9 6 5.7062 3.0685 -1.5306 10 6 4.1676 3.3904 1.4624 11 8 3.8348 2.7750 2.4564 12 6 4.7033 4.7632 1.5875 13 6 5.5995 5.2547 0.6321 14 6 6.1002 6.5398 0.7391 15 6 5.7317 7.3462 1.7933 16 6 4.8357 6.8670 2.7673 17 6 4.4549 7.6927 3.8507 18 1 5.1630 8.3904 4.2728 19 6 3.1608 7.6054 4.3758 20 7 2.3236 6.7154 3.9080 21 14 2.6285 8.7597 5.7446 22 1 3.7523 9.6654 6.0935 23 1 1.4664 9.5645 5.2895 24 1 2.2435 7.9663 6.9394 25 6 4.3213 5.5640 2.6573 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.9989 3.1542 -1.3074 32 1 2.0698 1.5876 -2.1492 33 1 0.5489 2.1253 -1.3969 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8800 1.0113 36 1 3.5965 3.4711 -1.6985 37 1 4.4914 4.6415 -0.6996 38 1 5.6013 2.0143 -1.7874 39 1 5.9613 3.6363 -2.4254 40 1 6.4961 3.1848 -0.7885 41 1 5.8987 4.6289 -0.1958 42 1 6.7880 6.9114 -0.0060 43 1 6.1307 8.3466 1.8727 44 1 1.4265 6.6552 4.2717 45 1 3.6329 5.1872 3.3994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176645772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -13.876475 kcal Electronic energy + Delta-G solvation = -23629.978564 eV Core-core repulsion = 20419.365448 eV Total energy + Delta-G solvation = -3210.613117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.85257 -37.38567 -36.49530 -35.16911 -33.55472 -31.09207 -30.04659 -29.47517 -29.19632 -26.72787 -25.34103 -23.72883 -23.06413 -21.35413 -21.00895 -19.98408 -18.62375 -17.44206 -16.28789 -15.84159 -15.29800 -15.16147 -15.02315 -14.78284 -13.87766 -13.77832 -13.42971 -13.11273 -13.08352 -12.75382 -12.66550 -12.50759 -12.26905 -12.08758 -11.83156 -11.68446 -11.46293 -11.17407 -11.14541 -11.06923 -10.98435 -10.85939 -10.54526 -10.44476 -10.38258 -10.18822 -9.95287 -9.63763 -9.27187 -8.86238 -8.20538 -7.58428 -7.34216 -6.64555 -4.43760 2.26528 2.82689 3.09858 3.12189 3.15892 3.49889 3.82551 3.97012 4.67555 4.89290 4.92926 5.02643 5.17520 5.23401 5.41000 5.43942 5.51876 5.54364 5.59158 5.67532 5.74118 5.80568 5.87509 5.95148 6.00065 6.06649 6.08646 6.11991 6.15062 6.18366 6.30962 6.41893 6.48749 6.50831 6.69470 6.98070 7.02661 7.10196 7.27478 7.41797 7.68134 7.79494 7.92280 8.07456 8.21693 8.54554 8.85897 8.86779 8.96203 10.26829 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004848 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.780558 B = 5773.917007 C = 7067.416518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.109 4.109 4 H 0.077 0.923 5 C -0.150 4.150 6 C 0.124 3.876 7 N -0.611 5.611 8 C 0.068 3.932 9 C -0.172 4.172 10 C 0.566 3.434 11 O -0.546 6.546 12 C -0.132 4.132 13 C -0.230 4.230 14 C -0.109 4.109 15 C -0.199 4.199 16 C 0.095 3.905 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.807 5.807 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.084 4.084 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.280 0.720 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 -8.164 -10.551 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.129 4.129 4 H 0.095 0.905 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.344 5.344 8 C -0.054 4.054 9 C -0.230 4.230 10 C 0.358 3.642 11 O -0.424 6.424 12 C -0.135 4.135 13 C -0.249 4.249 14 C -0.128 4.128 15 C -0.219 4.219 16 C 0.093 3.907 17 C -0.494 4.494 18 H 0.097 0.903 19 C -0.146 4.146 20 N -0.434 5.434 21 Si 0.741 3.259 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.104 4.104 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.971 -8.575 -9.975 13.190 hybrid contribution -0.369 0.521 0.424 0.766 sum -1.340 -8.055 -9.550 12.565 Atomic orbital electron populations 1.21801 0.95958 1.01136 1.02031 1.21485 0.95939 0.96227 1.01681 1.21569 0.96121 0.96161 0.99063 0.90456 1.22004 1.01014 1.01041 0.96603 1.21368 0.93190 0.83423 1.01976 1.47773 1.66673 1.13545 1.06377 1.22559 0.95980 0.99911 0.86981 1.22244 0.98518 1.01130 1.01156 1.18930 0.76506 0.86761 0.81972 1.90681 1.50331 1.64527 1.36898 1.19545 1.02084 0.92782 0.99067 1.21315 1.04462 0.97578 1.01522 1.20507 0.99782 0.94502 0.97964 1.21266 1.05650 0.98756 0.96227 1.17644 0.90163 0.91028 0.91911 1.19567 0.97234 1.18981 1.13660 0.90325 1.25901 0.96632 0.95442 0.96658 1.69732 1.06502 1.29547 1.37575 0.86132 0.79180 0.80249 0.80354 1.18549 1.19949 1.19879 1.21864 1.00006 0.92483 0.96071 0.92648 0.92629 0.93119 0.92273 0.91929 0.91892 0.93146 0.92815 0.91328 0.90394 0.91366 0.85860 0.92821 0.91692 0.91597 0.85940 0.88843 0.88593 0.90923 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.12 -1.29 5.40 -26.73 -0.14 -1.43 16 3 C -0.11 -1.49 2.59 -90.62 -0.24 -1.72 16 4 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 5 C -0.15 -1.80 8.11 37.16 0.30 -1.50 16 6 C 0.12 1.79 4.79 -4.04 -0.02 1.77 16 7 N -0.61 -10.44 2.35 -174.78 -0.41 -10.85 16 8 C 0.07 0.97 5.09 -4.04 -0.02 0.95 16 9 C -0.17 -2.04 9.12 37.16 0.34 -1.70 16 10 C 0.57 12.56 7.47 -12.31 -0.09 12.47 16 11 O -0.55 -13.80 16.26 5.32 0.09 -13.72 16 12 C -0.13 -3.10 5.49 -105.04 -0.58 -3.68 16 13 C -0.23 -4.72 7.42 -38.92 -0.29 -5.01 16 14 C -0.11 -2.27 10.01 -39.73 -0.40 -2.67 16 15 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 16 C 0.09 2.51 5.55 -106.87 -0.59 1.91 16 17 C -0.46 -12.31 9.04 -37.73 -0.34 -12.65 16 18 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 19 C 0.07 1.77 5.41 -17.34 -0.09 1.68 16 20 N -0.81 -21.54 10.61 55.55 0.59 -20.95 16 21 Si 0.92 19.15 29.56 -169.99 -5.03 14.12 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.08 -2.25 8.21 -38.44 -0.32 -2.56 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.84 5.55 -51.93 -0.29 0.55 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 34 H 0.07 0.82 7.20 -51.93 -0.37 0.44 16 35 H 0.08 1.25 7.46 -51.93 -0.39 0.86 16 36 H 0.07 0.85 5.40 -51.93 -0.28 0.57 16 37 H 0.12 2.03 4.12 -51.93 -0.21 1.82 16 38 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.87 6.85 -51.93 -0.36 0.52 16 41 H 0.12 2.10 2.80 -52.49 -0.15 1.96 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 44 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 45 H 0.14 4.08 5.96 -52.48 -0.31 3.77 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -29.17 348.31 -8.78 -37.95 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.77 Total: 8.61 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.50 Total: -20.42 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.18 Total: -31.80 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.17 -8.78 -37.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176645772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.074 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds