Wall clock time and date at job start Tue Mar 31 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46879 * 2 1 4 4 H 1.09002 * 109.47466 * 55.00277 * 3 2 1 5 5 C 1.52999 * 109.47559 * 295.00235 * 3 2 1 6 6 C 1.52999 * 109.46939 * 175.00066 * 3 2 1 7 7 N 1.46500 * 109.47370 * 185.00369 * 6 3 2 8 8 C 1.46507 * 119.99819 * 270.00108 * 7 6 3 9 9 C 1.52995 * 109.46812 * 286.72942 * 8 7 6 10 10 C 1.34774 * 120.00190 * 89.99498 * 7 6 3 11 11 O 1.21550 * 120.00232 * 357.20407 * 10 7 6 12 12 C 1.47894 * 119.99962 * 177.47812 * 10 7 6 13 13 C 1.39911 * 120.02305 * 331.62820 * 12 10 7 14 14 C 1.38334 * 120.35367 * 179.71338 * 13 12 10 15 15 C 1.37747 * 120.41354 * 0.56763 * 14 13 12 16 16 C 1.40751 * 120.03987 * 359.71559 * 15 14 13 17 17 C 1.41438 * 120.17765 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99848 * 325.66261 * 17 16 15 19 19 C 1.39936 * 119.99910 * 145.67246 * 17 16 15 20 20 N 1.30828 * 120.00225 * 3.31437 * 19 17 16 21 21 Si 1.86801 * 119.99627 * 183.31646 * 19 17 16 22 22 H 1.48496 * 109.47374 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46970 * 119.99833 * 21 19 17 24 24 H 1.48499 * 109.47075 * 239.99427 * 21 19 17 25 25 C 1.38993 * 120.02444 * 151.90735 * 12 10 7 26 26 H 1.08997 * 109.47498 * 299.99733 * 1 2 3 27 27 H 1.09005 * 109.47159 * 59.99827 * 1 2 3 28 28 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46642 * 240.00266 * 2 1 3 30 30 H 1.08996 * 109.46974 * 120.00028 * 2 1 3 31 31 H 1.09006 * 109.47347 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.46892 * 299.99958 * 5 3 2 33 33 H 1.08995 * 109.47384 * 59.99946 * 5 3 2 34 34 H 1.08998 * 109.47189 * 65.00218 * 6 3 2 35 35 H 1.09000 * 109.46942 * 305.00142 * 6 3 2 36 36 H 1.09003 * 109.46929 * 46.73260 * 8 7 6 37 37 H 1.09001 * 109.46851 * 166.73412 * 8 7 6 38 38 H 1.09005 * 109.47267 * 60.00132 * 9 8 7 39 39 H 1.09003 * 109.46713 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.47633 * 299.99887 * 9 8 7 41 41 H 1.07998 * 119.82532 * 359.97438 * 13 12 10 42 42 H 1.08002 * 119.79072 * 180.27732 * 14 13 12 43 43 H 1.08002 * 119.97922 * 179.69653 * 15 14 13 44 44 H 0.96994 * 120.00102 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.19934 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0432 2.8238 0.2459 8 6 4.3864 3.5874 -0.9564 9 6 5.7062 3.0685 -1.5306 10 6 4.1676 3.3904 1.4624 11 8 3.8348 2.7750 2.4564 12 6 4.7033 4.7632 1.5875 13 6 5.5995 5.2547 0.6321 14 6 6.1002 6.5398 0.7391 15 6 5.7317 7.3462 1.7933 16 6 4.8357 6.8670 2.7673 17 6 4.4549 7.6927 3.8507 18 1 5.1630 8.3904 4.2728 19 6 3.1608 7.6054 4.3758 20 7 2.3236 6.7154 3.9080 21 14 2.6285 8.7597 5.7446 22 1 3.7523 9.6654 6.0935 23 1 1.4664 9.5645 5.2895 24 1 2.2435 7.9663 6.9394 25 6 4.3213 5.5640 2.6573 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.9989 3.1542 -1.3074 32 1 2.0698 1.5876 -2.1492 33 1 0.5489 2.1253 -1.3969 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8800 1.0113 36 1 3.5965 3.4711 -1.6985 37 1 4.4914 4.6415 -0.6996 38 1 5.6013 2.0143 -1.7874 39 1 5.9613 3.6363 -2.4254 40 1 6.4961 3.1848 -0.7885 41 1 5.8987 4.6289 -0.1958 42 1 6.7880 6.9114 -0.0060 43 1 6.1307 8.3466 1.8727 44 1 1.4265 6.6552 4.2717 45 1 3.6329 5.1872 3.3994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176645772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:22 Heat of formation + Delta-G solvation = -28.931849 kcal Electronic energy + Delta-G solvation = -23630.631414 eV Core-core repulsion = 20419.365448 eV Total energy + Delta-G solvation = -3211.265967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.42643 -39.03277 -37.99919 -36.50818 -35.35986 -32.46141 -31.62067 -31.18681 -30.40400 -27.92975 -27.18671 -25.05022 -24.21398 -22.89480 -22.82010 -21.09756 -20.23219 -19.16954 -17.79953 -17.53195 -16.85797 -16.77776 -16.38244 -16.00843 -15.33825 -15.28744 -14.82327 -14.76560 -14.33123 -14.23859 -14.08947 -13.81551 -13.53577 -13.50405 -13.06975 -12.85593 -12.81375 -12.74487 -12.64168 -12.35877 -12.19471 -12.04222 -11.99184 -11.89416 -11.72480 -11.53051 -11.44813 -11.39136 -11.13363 -10.59241 -9.68391 -9.35354 -9.20967 -8.53403 -6.43540 0.43473 1.01167 1.35732 1.44001 1.51843 1.98319 2.16283 2.21604 2.80169 3.61482 3.72620 3.87989 3.96931 4.04769 4.08337 4.35681 4.37856 4.46582 4.49587 4.54805 4.63690 4.68906 4.75350 4.81787 4.83326 4.90835 4.93716 5.04755 5.08553 5.10738 5.11133 5.18292 5.20410 5.23140 5.34673 5.40004 5.46269 5.52902 5.54189 5.73148 5.86230 5.94678 6.09165 6.29634 6.42527 6.64135 6.91410 6.95962 7.28194 8.39361 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004848 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.780558 B = 5773.917007 C = 7067.416518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.028 0.972 5 C -0.145 4.145 6 C 0.120 3.880 7 N -0.597 5.597 8 C 0.060 3.940 9 C -0.168 4.168 10 C 0.556 3.444 11 O -0.594 6.594 12 C -0.144 4.144 13 C -0.204 4.204 14 C -0.106 4.106 15 C -0.202 4.202 16 C 0.061 3.939 17 C -0.501 4.501 18 H 0.080 0.920 19 C 0.023 3.977 20 N -0.848 5.848 21 Si 0.989 3.011 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.122 4.122 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.165 0.835 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.281 0.719 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -8.758 -14.192 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.127 4.127 4 H 0.046 0.954 5 C -0.202 4.202 6 C -0.002 4.002 7 N -0.327 5.327 8 C -0.061 4.061 9 C -0.225 4.225 10 C 0.348 3.652 11 O -0.476 6.476 12 C -0.147 4.147 13 C -0.222 4.222 14 C -0.124 4.124 15 C -0.222 4.222 16 C 0.059 3.941 17 C -0.532 4.532 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.476 5.476 21 Si 0.810 3.190 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.197 1.197 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.182 0.818 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.091 0.909 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.207 -9.176 -13.682 16.476 hybrid contribution -0.654 0.589 1.348 1.610 sum -0.447 -8.587 -12.334 15.036 Atomic orbital electron populations 1.21800 0.95449 1.02122 1.01493 1.21464 0.96372 0.94415 1.02589 1.21504 0.95210 0.97594 0.98351 0.95362 1.21970 1.01652 1.00211 0.96336 1.21616 0.94042 0.81687 1.02857 1.47820 1.64846 1.14540 1.05536 1.22769 0.98873 0.98342 0.86120 1.22212 0.95777 1.02869 1.01655 1.18916 0.76698 0.86434 0.83192 1.90645 1.52554 1.65457 1.38957 1.19835 1.02542 0.93407 0.98915 1.21852 1.01615 0.97932 1.00834 1.21013 0.99570 0.93989 0.97792 1.21562 1.04505 0.99867 0.96261 1.17968 0.91676 0.91103 0.93336 1.19845 0.98164 1.20024 1.15157 0.90165 1.26831 0.96309 0.96808 0.98913 1.69887 1.06857 1.31460 1.39387 0.85049 0.78999 0.78046 0.76915 1.17532 1.19016 1.19725 1.21615 1.01587 0.93761 0.97348 0.94713 0.91689 0.91358 0.89395 0.92903 0.93419 0.90038 0.92280 0.87043 0.92546 0.88646 0.88098 0.90848 0.88675 0.92965 0.81826 0.83988 0.87155 0.90890 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 71.98 0.70 -2.28 16 2 C -0.11 -2.30 5.40 30.59 0.17 -2.13 16 3 C -0.11 -2.84 2.59 -10.80 -0.03 -2.87 16 4 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.14 -3.11 8.11 71.98 0.58 -2.53 16 6 C 0.12 3.32 4.79 86.38 0.41 3.73 16 7 N -0.60 -19.91 2.35 -825.16 -1.94 -21.84 16 8 C 0.06 1.52 5.09 86.38 0.44 1.96 16 9 C -0.17 -3.11 9.12 71.98 0.66 -2.45 16 10 C 0.56 25.67 7.47 86.80 0.65 26.32 16 11 O -0.59 -32.29 16.26 -3.87 -0.06 -32.35 16 12 C -0.14 -7.00 5.49 -20.13 -0.11 -7.11 16 13 C -0.20 -8.04 7.42 22.70 0.17 -7.87 16 14 C -0.11 -4.14 10.01 22.18 0.22 -3.92 16 15 C -0.20 -9.47 9.78 22.77 0.22 -9.25 16 16 C 0.06 3.39 5.55 -21.32 -0.12 3.27 16 17 C -0.50 -28.04 9.04 23.47 0.21 -27.83 16 18 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 19 C 0.02 1.21 5.41 85.25 0.46 1.68 16 20 N -0.85 -48.72 10.61 21.82 0.23 -48.48 16 21 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 C -0.12 -7.01 8.21 23.01 0.19 -6.82 16 26 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 1.15 6.57 -2.38 -0.02 1.13 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.16 5.55 -2.38 -0.01 1.15 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.21 6.56 -2.39 -0.02 1.20 16 34 H 0.11 2.16 7.20 -2.39 -0.02 2.14 16 35 H 0.06 1.83 7.46 -2.39 -0.02 1.81 16 36 H 0.10 1.99 5.40 -2.39 -0.01 1.98 16 37 H 0.10 3.05 4.12 -2.39 -0.01 3.04 16 38 H 0.07 1.13 7.32 -2.38 -0.02 1.12 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.14 6.85 -2.39 -0.02 1.13 16 41 H 0.16 5.04 2.80 -2.91 -0.01 5.04 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16 45 H 0.10 6.44 5.96 -2.91 -0.02 6.42 16 Total: -1.00 -71.85 348.31 6.07 -65.79 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.98 Total: 31.96 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 4.82 Total: -38.10 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -1.70 Total: -70.33 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.06 Total: -32.35 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -71.85 6.07 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176645772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.855 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds