Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.47034 * 305.00361 * 18 17 16 20 20 C 1.53004 * 109.47051 * 64.99701 * 18 17 16 21 21 C 1.50699 * 109.47436 * 184.99939 * 18 17 16 22 22 C 1.38233 * 119.99922 * 299.72644 * 21 18 17 23 23 C 1.38237 * 120.00035 * 179.80712 * 22 21 18 24 24 C 1.38234 * 119.99690 * 0.40179 * 23 22 21 25 25 C 1.38239 * 120.00176 * 359.85157 * 24 23 22 26 26 C 1.38231 * 119.99920 * 359.95464 * 25 24 23 27 27 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 34 34 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 35 35 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 36 36 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 37 37 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 38 38 H 1.09000 * 109.46945 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.47392 * 300.00108 * 20 18 17 40 40 H 1.09000 * 109.47172 * 60.00314 * 20 18 17 41 41 H 1.08005 * 119.99829 * 359.97438 * 22 21 18 42 42 H 1.07992 * 120.00189 * 180.23074 * 23 22 21 43 43 H 1.08000 * 119.99744 * 179.83436 * 24 23 22 44 44 H 1.07998 * 120.00275 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99904 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7875 4.5780 -3.8288 19 1 -1.0469 5.3348 -4.0874 20 6 -1.8638 3.5363 -4.9469 21 6 -3.1347 5.2312 -3.6579 22 6 -4.2380 4.4648 -3.3318 23 6 -5.4731 5.0645 -3.1711 24 6 -5.6065 6.4295 -3.3446 25 6 -4.5041 7.1951 -3.6758 26 6 -3.2683 6.5960 -3.8326 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0680 2.6143 -3.4687 36 1 -2.0738 3.0783 -2.3094 37 1 -1.4145 4.6181 -1.7072 38 1 -2.1518 4.0236 -5.8784 39 1 -0.8894 3.0639 -5.0705 40 1 -2.6044 2.7795 -4.6883 41 1 -4.1345 3.3979 -3.2000 42 1 -6.3343 4.4664 -2.9128 43 1 -6.5719 6.8976 -3.2217 44 1 -4.6084 8.2614 -3.8118 45 1 -2.4073 7.1941 -4.0917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183791219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = -60.585689 kcal Electronic energy + Delta-G solvation = -22614.063753 eV Core-core repulsion = 19401.425173 eV Total energy + Delta-G solvation = -3212.638580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81448 -40.20346 -37.25205 -36.47136 -34.25786 -33.02189 -31.93090 -31.71989 -29.76922 -28.84553 -26.23286 -24.90026 -23.80780 -23.19604 -21.84531 -21.00622 -20.58481 -18.88438 -17.78672 -17.27862 -17.12377 -16.74157 -16.25608 -15.90898 -15.79891 -15.17011 -14.83467 -14.64584 -14.41642 -14.20849 -14.11289 -13.93904 -13.48729 -13.28390 -13.16764 -13.08414 -12.91428 -12.65535 -12.65049 -12.39123 -12.18022 -12.08611 -12.01542 -11.78070 -11.57947 -11.48790 -11.31754 -11.04404 -10.59733 -10.44470 -9.76976 -9.55831 -9.53583 -8.15089 -6.32609 0.50939 0.54999 1.44717 1.46614 1.54326 1.97485 2.37987 2.74249 2.95435 3.14112 3.74181 3.86403 4.05097 4.19298 4.20264 4.27053 4.34397 4.48240 4.49807 4.58016 4.58766 4.61129 4.70054 4.73440 4.75924 4.82679 5.06185 5.07376 5.09701 5.13088 5.22843 5.24744 5.28047 5.42367 5.44410 5.46190 5.57711 5.64312 5.67327 5.68322 5.81916 5.82061 5.97383 6.18489 6.19393 6.76719 7.08875 7.35516 7.69959 8.90019 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.002860 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.125861 B = 9789.397146 C =10031.603217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.491 3.509 15 O -0.594 6.594 16 C -0.129 4.129 17 C -0.084 4.084 18 C -0.046 4.046 19 H 0.092 0.908 20 C -0.144 4.144 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.130 4.130 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 9.836 -16.784 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.358 5.358 14 C 0.279 3.721 15 O -0.476 6.476 16 C -0.169 4.169 17 C -0.122 4.122 18 C -0.064 4.064 19 H 0.111 0.889 20 C -0.201 4.201 21 C -0.085 4.085 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.148 4.148 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.431 9.708 -15.946 22.429 hybrid contribution 1.030 -0.248 0.569 1.203 sum -11.401 9.460 -15.377 21.352 Atomic orbital electron populations 1.21668 0.97021 0.98996 1.00241 1.21773 0.93704 0.99306 1.01161 1.18307 0.93476 0.89117 0.81737 0.98861 1.21584 0.91585 1.38821 1.06647 0.91004 1.25796 1.03335 0.94443 0.95062 1.70057 1.37131 1.38434 1.09875 0.85433 0.79128 0.78441 0.77545 1.19667 1.21305 1.18821 1.46304 1.15916 1.56268 1.17353 1.21466 0.81458 0.78392 0.90759 1.90651 1.52541 1.61366 1.43005 1.21753 0.98750 1.02065 0.94331 1.21244 0.94749 0.99437 0.96799 1.20168 0.93399 0.97998 0.94826 0.88924 1.21899 1.02742 0.98094 0.97356 1.20068 0.95441 0.94146 0.98860 1.21200 0.93079 1.00223 1.00344 1.21416 0.97734 0.95743 1.00069 1.21440 0.99742 0.94037 1.00168 1.21453 0.92724 1.00890 0.99468 1.21357 0.98516 0.94176 1.00778 0.95893 0.93506 0.93708 0.94020 0.91278 0.92672 0.76167 0.86986 0.86550 0.92826 0.93652 0.91907 0.90813 0.93001 0.86332 0.84935 0.84339 0.84165 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 3 C 0.28 14.30 2.24 44.25 0.10 14.40 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -29.05 8.73 25.60 0.22 -28.83 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -53.01 11.30 21.45 0.24 -52.77 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.71 -28.69 5.02 -446.09 -2.24 -30.93 16 14 C 0.49 18.76 6.40 87.66 0.56 19.32 16 15 O -0.59 -28.18 13.12 -3.02 -0.04 -28.22 16 16 C -0.13 -3.22 5.46 29.85 0.16 -3.06 16 17 C -0.08 -2.15 3.72 30.59 0.11 -2.03 16 18 C -0.05 -0.86 2.56 -11.54 -0.03 -0.89 16 19 H 0.09 1.49 7.88 -2.39 -0.02 1.47 16 20 C -0.14 -2.32 8.76 71.98 0.63 -1.69 16 21 C -0.09 -1.79 4.78 -19.87 -0.09 -1.88 16 22 C -0.13 -2.84 8.76 22.27 0.20 -2.65 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.14 -2.38 10.05 22.27 0.22 -2.15 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.46 9.67 22.27 0.22 -2.25 16 27 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 28 H 0.05 2.04 5.64 -2.39 -0.01 2.02 16 29 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.40 13.56 8.54 -92.71 -0.79 12.77 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.12 2.28 6.56 -2.39 -0.02 2.26 16 36 H 0.05 1.54 7.54 -2.39 -0.02 1.52 16 37 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.02 6.56 -2.39 -0.02 1.01 16 40 H 0.05 0.90 7.37 -2.39 -0.02 0.88 16 41 H 0.12 2.54 7.16 -2.91 -0.02 2.52 16 42 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 45 H 0.14 2.03 7.95 -2.91 -0.02 2.00 16 Total: -1.00 -68.28 358.24 4.14 -64.14 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.17 Total: 29.26 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.98 Total: -25.64 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.00 Total: -83.70 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.04 Total: -28.22 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.28 4.14 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.555 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds