Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47089 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47226 * 305.00158 * 18 17 16 20 20 C 1.53005 * 109.46788 * 64.99887 * 18 17 16 21 21 C 1.50698 * 109.47088 * 184.99557 * 18 17 16 22 22 C 1.38231 * 120.00296 * 299.72573 * 21 18 17 23 23 C 1.38235 * 119.99674 * 179.80978 * 22 21 18 24 24 C 1.38233 * 120.00615 * 0.39837 * 23 22 21 25 25 C 1.38236 * 119.99600 * 359.85908 * 24 23 22 26 26 C 1.38236 * 120.00102 * 359.95252 * 25 24 23 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 31 31 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 32 32 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 34 34 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 35 35 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 36 36 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 37 37 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 38 38 H 1.08998 * 109.47062 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.47177 * 300.00131 * 20 18 17 40 40 H 1.08999 * 109.47015 * 60.00143 * 20 18 17 41 41 H 1.08005 * 120.00073 * 0.02562 * 22 21 18 42 42 H 1.08004 * 119.99630 * 180.23391 * 23 22 21 43 43 H 1.07996 * 120.00459 * 179.82946 * 24 23 22 44 44 H 1.07997 * 120.00105 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00103 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 6 -1.7869 4.5790 3.8285 19 1 -1.6709 3.8789 4.6558 20 6 -0.8939 5.7990 4.0635 21 6 -3.2256 5.0190 3.7407 22 6 -3.6154 5.9172 2.7649 23 6 -4.9358 6.3177 2.6820 24 6 -5.8649 5.8265 3.5800 25 6 -5.4740 4.9324 4.5592 26 6 -4.1543 4.5288 4.6397 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8770 0.4827 -2.1133 33 1 2.2720 2.1230 1.9979 34 1 0.0680 2.6142 3.4688 35 1 0.7281 4.1539 2.8669 36 1 -1.4131 4.6194 1.7070 37 1 -2.0738 3.0799 2.3086 38 1 -1.1820 6.2860 4.9952 39 1 0.1467 5.4807 4.1270 40 1 -1.0100 6.4990 3.2362 41 1 -2.8890 6.3033 2.0651 42 1 -5.2411 7.0165 1.9172 43 1 -6.8959 6.1416 3.5170 44 1 -6.1997 4.5489 5.2611 45 1 -3.8490 3.8300 5.4044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183791234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -36.291049 kcal Electronic energy + Delta-G solvation = -22695.810471 eV Core-core repulsion = 19484.225386 eV Total energy + Delta-G solvation = -3211.585086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79239 -39.11009 -36.16339 -35.12282 -32.38943 -31.79614 -31.06918 -30.86980 -28.92873 -27.49114 -25.23370 -23.15738 -22.69025 -22.31025 -20.61892 -19.77687 -19.48125 -17.43284 -16.86824 -15.90955 -15.86432 -15.43675 -15.27904 -14.96926 -14.36471 -13.99968 -13.77883 -13.56412 -13.49845 -13.30266 -12.84878 -12.71123 -12.41627 -12.23744 -11.92150 -11.89849 -11.72692 -11.51920 -11.29037 -11.11278 -10.88045 -10.86232 -10.73103 -10.58732 -10.48108 -9.91137 -9.54062 -9.21294 -9.05563 -9.03938 -8.79556 -8.73827 -8.01225 -6.20497 -4.22617 1.22694 1.26533 3.23740 3.33031 3.35904 3.41454 3.64068 4.02813 4.32369 4.52964 4.63785 4.84954 4.93897 5.01003 5.06737 5.13349 5.19493 5.32603 5.37681 5.38540 5.46913 5.55438 5.72077 5.81429 5.84953 5.93006 5.94703 5.98763 6.02237 6.04536 6.21111 6.22793 6.33435 6.38254 6.39599 6.56399 6.67809 6.72094 6.87175 6.87748 6.98369 7.30142 7.34853 7.55211 8.18696 8.57805 8.77604 9.02293 9.41140 10.91649 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.003042 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.092708 B = 9203.420482 C = 9528.919193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.295 1.295 13 N -0.704 5.704 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.055 4.055 19 H 0.078 0.922 20 C -0.146 4.146 21 C -0.070 4.070 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 8.402 12.996 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.184 4.184 17 C -0.130 4.130 18 C -0.073 4.073 19 H 0.096 0.904 20 C -0.204 4.204 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.937 8.322 12.196 23.232 hybrid contribution -0.065 -0.567 -0.392 0.692 sum -18.002 7.756 11.805 22.882 Atomic orbital electron populations 1.21868 0.96952 0.98924 1.02279 1.22283 0.94345 1.00059 1.00995 1.19118 0.95493 0.88461 0.83123 0.93432 1.21072 0.88722 1.39651 1.07769 0.90251 1.24844 0.94863 0.95178 0.97697 1.69872 1.08694 1.44625 1.29828 0.86898 0.80972 0.79943 0.80877 1.20270 1.18473 1.22204 1.46198 1.15067 1.56087 1.17818 1.20508 0.82367 0.79070 0.89477 1.90658 1.51540 1.60040 1.40909 1.21748 0.98591 1.01179 0.96865 1.21354 0.95029 1.00542 0.96044 1.20243 0.90661 0.97515 0.98930 0.90393 1.21914 0.99500 0.97248 1.01700 1.19911 0.95461 0.96379 0.95219 1.21065 0.96126 0.97578 0.98215 1.21156 0.93436 1.00120 0.99026 1.21117 0.99397 0.98255 0.95963 1.21116 0.96047 0.98061 0.98695 1.21086 0.93165 1.00292 0.99202 0.92929 0.95087 0.92887 0.92886 0.92382 0.92318 0.77300 0.89533 0.89144 0.91009 0.91176 0.92777 0.91791 0.92354 0.85948 0.86226 0.86413 0.86323 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.14 -3.09 5.11 -26.73 -0.14 -3.23 16 3 C 0.24 5.72 1.83 -69.08 -0.13 5.59 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 5 C -0.53 -14.42 9.31 -34.44 -0.32 -14.74 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 9 Si 0.88 21.92 24.41 -169.99 -4.15 17.77 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 N -0.70 -13.64 5.02 -54.93 -0.28 -13.91 16 14 C 0.50 8.99 6.40 -10.98 -0.07 8.92 16 15 O -0.55 -11.83 13.12 5.56 0.07 -11.76 16 16 C -0.14 -1.81 5.45 -27.88 -0.15 -1.96 16 17 C -0.09 -1.12 3.71 -26.73 -0.10 -1.22 16 18 C -0.06 -0.54 2.56 -91.77 -0.24 -0.77 16 19 H 0.08 0.69 7.88 -51.93 -0.41 0.28 16 20 C -0.15 -1.30 8.76 37.16 0.33 -0.97 16 21 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 22 C -0.11 -1.18 8.76 -39.58 -0.35 -1.52 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.16 9.67 -39.58 -0.38 -1.54 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.05 5.65 -51.93 -0.29 0.75 16 30 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.00 6.56 -51.93 -0.34 0.65 16 36 H 0.07 0.97 7.54 -51.93 -0.39 0.57 16 37 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.06 0.53 7.37 -51.93 -0.38 0.15 16 41 H 0.12 1.22 7.16 -52.48 -0.38 0.85 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -31.49 351.48 -8.50 -39.99 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.20 Total: 6.16 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.02 Total: -17.80 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.50 Total: -39.67 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.15 Total: 17.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.49 -8.50 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.702 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds