Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47089 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47226 * 305.00158 * 18 17 16 20 20 C 1.53005 * 109.46788 * 64.99887 * 18 17 16 21 21 C 1.50698 * 109.47088 * 184.99557 * 18 17 16 22 22 C 1.38231 * 120.00296 * 299.72573 * 21 18 17 23 23 C 1.38235 * 119.99674 * 179.80978 * 22 21 18 24 24 C 1.38233 * 120.00615 * 0.39837 * 23 22 21 25 25 C 1.38236 * 119.99600 * 359.85908 * 24 23 22 26 26 C 1.38236 * 120.00102 * 359.95252 * 25 24 23 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 31 31 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 32 32 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 34 34 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 35 35 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 36 36 H 1.09003 * 109.47065 * 299.99222 * 17 16 14 37 37 H 1.08999 * 109.47620 * 60.00011 * 17 16 14 38 38 H 1.08998 * 109.47062 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.47177 * 300.00131 * 20 18 17 40 40 H 1.08999 * 109.47015 * 60.00143 * 20 18 17 41 41 H 1.08005 * 120.00073 * 0.02562 * 22 21 18 42 42 H 1.08004 * 119.99630 * 180.23391 * 23 22 21 43 43 H 1.07996 * 120.00459 * 179.82946 * 24 23 22 44 44 H 1.07997 * 120.00105 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00103 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3821 3.8951 2.5210 18 6 -1.7869 4.5790 3.8285 19 1 -1.6709 3.8789 4.6558 20 6 -0.8939 5.7990 4.0635 21 6 -3.2256 5.0190 3.7407 22 6 -3.6154 5.9172 2.7649 23 6 -4.9358 6.3177 2.6820 24 6 -5.8649 5.8265 3.5800 25 6 -5.4740 4.9324 4.5592 26 6 -4.1543 4.5288 4.6397 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8770 0.4827 -2.1133 33 1 2.2720 2.1230 1.9979 34 1 0.0680 2.6142 3.4688 35 1 0.7281 4.1539 2.8669 36 1 -1.4131 4.6194 1.7070 37 1 -2.0738 3.0799 2.3086 38 1 -1.1820 6.2860 4.9952 39 1 0.1467 5.4807 4.1270 40 1 -1.0100 6.4990 3.2362 41 1 -2.8890 6.3033 2.0651 42 1 -5.2411 7.0165 1.9172 43 1 -6.8959 6.1416 3.5170 44 1 -6.1997 4.5489 5.2611 45 1 -3.8490 3.8300 5.4044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183791234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -54.714796 kcal Electronic energy + Delta-G solvation = -22696.609385 eV Core-core repulsion = 19484.225386 eV Total energy + Delta-G solvation = -3212.383999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90142 -40.23969 -37.39537 -36.52357 -34.37687 -33.37657 -32.00449 -31.72499 -29.85573 -29.23763 -26.24841 -24.60063 -23.83927 -23.25765 -22.12409 -21.12636 -20.59076 -19.10749 -17.89286 -17.50251 -17.34201 -16.68466 -16.33227 -15.99341 -15.77608 -15.32044 -14.92604 -14.85217 -14.43804 -14.40354 -14.11287 -13.95518 -13.83498 -13.60976 -13.38920 -13.06787 -12.97830 -12.77346 -12.65817 -12.43583 -12.35946 -12.06605 -11.86174 -11.76678 -11.49028 -11.38459 -11.33628 -11.22022 -10.86350 -10.57009 -9.76945 -9.70027 -9.53666 -8.38702 -6.43481 0.50914 0.55032 1.25423 1.33756 1.43652 1.89783 2.25172 2.57643 2.94377 2.97346 3.73707 3.84765 3.99494 4.19357 4.20334 4.24055 4.27171 4.32247 4.34468 4.43810 4.49926 4.59113 4.61181 4.70080 4.75125 4.76998 4.88184 5.00528 5.06150 5.08578 5.12228 5.14346 5.22834 5.23462 5.26326 5.41785 5.43362 5.44854 5.52770 5.64557 5.67522 5.72985 5.82065 6.16463 6.18506 6.59216 6.97860 7.20633 7.57806 8.76544 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030260 B = 0.003042 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.092708 B = 9203.420482 C = 9528.919193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.294 1.294 13 N -0.704 5.704 14 C 0.497 3.503 15 O -0.588 6.588 16 C -0.131 4.131 17 C -0.084 4.084 18 C -0.046 4.046 19 H 0.094 0.906 20 C -0.145 4.145 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.129 4.129 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.270 0.730 33 H 0.406 0.594 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.254 8.027 14.719 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.036 0.964 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.221 1.221 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.470 6.470 16 C -0.171 4.171 17 C -0.123 4.123 18 C -0.064 4.064 19 H 0.113 0.887 20 C -0.203 4.203 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.627 7.954 13.955 25.362 hybrid contribution 0.430 -0.369 -0.885 1.051 sum -19.197 7.585 13.070 24.431 Atomic orbital electron populations 1.21749 0.95259 1.00409 1.01562 1.22203 0.95781 0.98630 1.00928 1.18734 0.93032 0.89610 0.84298 0.96415 1.21325 0.90475 1.38307 1.06854 0.92457 1.25543 0.95701 0.95970 0.99848 1.69976 1.10216 1.46285 1.30853 0.86046 0.79233 0.79952 0.78434 1.18565 1.18767 1.22103 1.46068 1.16170 1.56365 1.16774 1.21434 0.81127 0.78083 0.90870 1.90647 1.52410 1.61154 1.42756 1.21763 0.98960 1.02014 0.94321 1.21256 0.94422 0.99571 0.97005 1.20168 0.90540 0.97923 0.97759 0.88745 1.21910 0.99742 0.96793 1.01806 1.20059 0.96008 0.96737 0.95636 1.21198 0.96663 0.98335 0.98684 1.21411 0.93375 1.00526 0.99690 1.21436 1.00329 0.98015 0.95623 1.21455 0.96382 0.97739 0.98946 1.21360 0.93395 1.00517 0.99443 0.94785 0.92417 0.92490 0.94072 0.91238 0.92117 0.75848 0.86502 0.86942 0.92922 0.93011 0.91983 0.90939 0.93114 0.86401 0.85027 0.84401 0.84167 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.52 71.98 0.61 -4.55 16 2 C -0.14 -5.93 5.11 30.60 0.16 -5.78 16 3 C 0.25 11.72 1.83 44.24 0.08 11.80 16 4 H 0.02 0.96 6.63 -2.39 -0.02 0.94 16 5 C -0.53 -28.97 9.31 25.60 0.24 -28.74 16 6 H 0.06 3.31 7.98 -2.91 -0.02 3.28 16 7 C 0.03 1.65 5.45 84.65 0.46 2.11 16 8 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 9 Si 0.94 45.37 24.41 68.60 1.67 47.04 16 10 H -0.26 -11.85 6.83 99.48 0.68 -11.17 16 11 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 13 N -0.70 -26.65 5.02 -446.10 -2.24 -28.89 16 14 C 0.50 17.30 6.40 87.66 0.56 17.86 16 15 O -0.59 -25.13 13.12 -3.01 -0.04 -25.17 16 16 C -0.13 -2.98 5.45 29.85 0.16 -2.82 16 17 C -0.08 -1.96 3.71 30.60 0.11 -1.85 16 18 C -0.05 -0.80 2.56 -11.54 -0.03 -0.83 16 19 H 0.09 1.36 7.88 -2.39 -0.02 1.34 16 20 C -0.15 -2.28 8.76 71.98 0.63 -1.65 16 21 C -0.08 -1.66 4.78 -19.87 -0.09 -1.75 16 22 C -0.13 -2.71 8.76 22.27 0.20 -2.52 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.14 -2.25 10.05 22.27 0.22 -2.02 16 25 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 26 C -0.13 -2.26 9.67 22.27 0.22 -2.04 16 27 H 0.03 1.43 7.85 -2.39 -0.02 1.41 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.15 5.65 -2.39 -0.01 2.14 16 30 H 0.04 1.88 3.22 -2.38 -0.01 1.87 16 31 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.41 13.29 8.54 -92.71 -0.79 12.50 16 34 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.11 2.14 6.56 -2.39 -0.02 2.12 16 36 H 0.05 1.42 7.54 -2.39 -0.02 1.40 16 37 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.00 6.57 -2.39 -0.02 0.99 16 40 H 0.05 0.87 7.37 -2.39 -0.02 0.85 16 41 H 0.12 2.42 7.16 -2.91 -0.02 2.40 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 1.84 7.95 -2.91 -0.02 1.81 16 Total: -1.00 -68.66 351.48 3.77 -64.90 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.10 Total: 24.95 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 3.97 Total: -26.85 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.94 Total: -84.86 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.04 Total: -25.17 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -68.66 3.77 -64.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.181 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds