Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.46883 * 54.99401 * 18 17 16 20 20 C 1.53000 * 109.46958 * 294.99937 * 18 17 16 21 21 C 1.50694 * 109.47243 * 175.00022 * 18 17 16 22 22 C 1.38237 * 120.00310 * 59.72638 * 21 18 17 23 23 C 1.38233 * 119.99989 * 179.78536 * 22 21 18 24 24 C 1.38227 * 120.00141 * 0.44514 * 23 22 21 25 25 C 1.38237 * 120.00105 * 359.80434 * 24 23 22 26 26 C 1.38232 * 119.99948 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 34 34 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 35 35 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 36 36 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 37 37 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 38 38 H 1.09005 * 109.47063 * 59.99844 * 20 18 17 39 39 H 1.08999 * 109.47490 * 179.97438 * 20 18 17 40 40 H 1.08999 * 109.47333 * 299.99982 * 20 18 17 41 41 H 1.08002 * 119.99178 * 359.97438 * 22 21 18 42 42 H 1.08003 * 119.99600 * 180.27321 * 23 22 21 43 43 H 1.08001 * 120.00273 * 179.83186 * 24 23 22 44 44 H 1.07997 * 120.00006 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00152 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7875 4.5780 -3.8288 19 1 -1.6705 3.8781 -4.6563 20 6 -0.8953 5.7986 -4.0633 21 6 -3.2264 5.0169 -3.7415 22 6 -3.6196 5.9058 -2.7586 23 6 -4.9387 6.3118 -2.6813 24 6 -5.8665 5.8219 -3.5812 25 6 -5.4744 4.9289 -4.5609 26 6 -4.1544 4.5264 -4.6411 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0680 2.6143 -3.4687 36 1 -2.0738 3.0783 -2.3094 37 1 -1.4145 4.6181 -1.7072 38 1 0.1456 5.4812 -4.1264 39 1 -1.1833 6.2857 -4.9949 40 1 -1.0121 6.4985 -3.2359 41 1 -2.8954 6.2854 -2.0529 42 1 -5.2449 7.0098 -1.9161 43 1 -6.8976 6.1370 -3.5191 44 1 -6.1994 4.5458 -5.2638 45 1 -3.8482 3.8285 -5.4062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183791248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -44.371019 kcal Electronic energy + Delta-G solvation = -22604.263949 eV Core-core repulsion = 19392.328489 eV Total energy + Delta-G solvation = -3211.935459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72239 -38.91457 -36.03855 -34.88517 -32.35080 -31.46903 -31.00733 -30.55877 -28.85607 -26.99957 -25.12044 -23.23408 -22.80284 -22.23487 -20.25226 -19.64866 -19.23110 -17.30155 -16.74435 -15.82044 -15.57893 -15.22722 -15.12342 -14.89483 -14.26532 -13.95495 -13.67672 -13.49425 -13.42381 -13.09531 -12.68679 -12.52074 -12.34821 -12.00228 -11.76584 -11.59610 -11.36829 -11.24878 -11.20831 -10.96038 -10.85073 -10.80698 -10.67542 -10.41388 -10.28874 -10.12755 -9.60116 -9.01993 -9.01439 -8.90761 -8.73670 -8.47817 -7.75453 -6.11000 -4.20156 1.26906 1.30680 3.23748 3.31679 3.34195 3.51116 3.68550 4.15582 4.39174 4.59821 4.68910 4.88886 4.98405 5.06022 5.14072 5.20473 5.27044 5.37826 5.43246 5.43905 5.54154 5.62999 5.79420 5.88039 5.90293 5.97206 6.00489 6.09470 6.29048 6.37908 6.41898 6.42531 6.46399 6.49524 6.61240 6.69623 6.91496 7.07062 7.23385 7.40840 7.52310 7.64855 7.77300 7.93649 8.21132 8.73983 8.81437 9.22543 9.47952 10.94346 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.002871 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.039071 B = 9749.294781 C =10089.636768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.551 6.551 16 C -0.144 4.144 17 C -0.091 4.091 18 C -0.055 4.055 19 H 0.077 0.923 20 C -0.146 4.146 21 C -0.069 4.069 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 9.366 -14.217 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.430 6.430 16 C -0.184 4.184 17 C -0.129 4.129 18 C -0.074 4.074 19 H 0.096 0.904 20 C -0.203 4.203 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.915 9.233 -13.338 20.735 hybrid contribution 1.276 -0.112 -0.228 1.301 sum -11.639 9.121 -13.567 20.068 Atomic orbital electron populations 1.21834 0.98364 0.97921 1.01251 1.21925 0.92600 0.99917 1.02153 1.18753 0.94084 0.89153 0.81267 0.93435 1.21286 0.90843 1.38778 1.06181 0.92110 1.24899 0.98555 0.94884 0.95436 1.69915 1.34976 1.37752 1.09347 0.86417 0.84978 0.77752 0.78086 1.19771 1.20906 1.20900 1.46514 1.14847 1.56189 1.18394 1.20434 0.82631 0.79320 0.89298 1.90661 1.51439 1.60027 1.40884 1.21756 0.98437 1.01034 0.97206 1.21345 0.95162 1.00526 0.95895 1.20246 0.90632 0.97467 0.99019 0.90444 1.21907 0.99492 0.97263 1.01637 1.19917 0.95473 0.96399 0.95146 1.21067 0.96137 0.97633 0.98119 1.21152 0.93462 1.00097 0.99028 1.21111 0.99371 0.98283 0.95983 1.21110 0.96031 0.98090 0.98701 1.21083 0.93164 1.00246 0.99260 0.93208 0.94241 0.95977 0.95141 0.88405 0.92663 0.78098 0.89445 0.89783 0.91176 0.91051 0.91846 0.92835 0.92371 0.85943 0.86230 0.86429 0.86342 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.84 11.30 55.43 0.63 -24.21 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.55 5.02 -54.93 -0.28 -14.83 16 14 C 0.50 9.58 6.40 -10.98 -0.07 9.51 16 15 O -0.55 -12.67 13.12 5.56 0.07 -12.60 16 16 C -0.14 -1.95 5.45 -27.88 -0.15 -2.10 16 17 C -0.09 -1.20 3.71 -26.73 -0.10 -1.30 16 18 C -0.06 -0.57 2.56 -91.77 -0.24 -0.81 16 19 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 20 C -0.15 -1.36 8.76 37.16 0.33 -1.03 16 21 C -0.07 -0.76 4.78 -104.62 -0.50 -1.26 16 22 C -0.11 -1.23 8.76 -39.58 -0.35 -1.58 16 23 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 24 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.22 9.67 -39.58 -0.38 -1.60 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 34 H 0.09 1.03 6.57 -51.93 -0.34 0.68 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.07 1.02 7.51 -51.93 -0.39 0.63 16 38 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.55 7.41 -51.93 -0.38 0.17 16 41 H 0.12 1.29 7.16 -52.49 -0.38 0.91 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.44 358.24 -9.56 -40.01 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.33 Total: 7.67 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.03 Total: -17.04 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.35 Total: -39.04 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.44 -9.56 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.363 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds