Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47141 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.46883 * 54.99401 * 18 17 16 20 20 C 1.53000 * 109.46958 * 294.99937 * 18 17 16 21 21 C 1.50694 * 109.47243 * 175.00022 * 18 17 16 22 22 C 1.38237 * 120.00310 * 59.72638 * 21 18 17 23 23 C 1.38233 * 119.99989 * 179.78536 * 22 21 18 24 24 C 1.38227 * 120.00141 * 0.44514 * 23 22 21 25 25 C 1.38237 * 120.00105 * 359.80434 * 24 23 22 26 26 C 1.38232 * 119.99948 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 28 28 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 34 34 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 35 35 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 36 36 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 37 37 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 38 38 H 1.09005 * 109.47063 * 59.99844 * 20 18 17 39 39 H 1.08999 * 109.47490 * 179.97438 * 20 18 17 40 40 H 1.08999 * 109.47333 * 299.99982 * 20 18 17 41 41 H 1.08002 * 119.99178 * 359.97438 * 22 21 18 42 42 H 1.08003 * 119.99600 * 180.27321 * 23 22 21 43 43 H 1.08001 * 120.00273 * 179.83186 * 24 23 22 44 44 H 1.07997 * 120.00006 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00152 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7875 4.5780 -3.8288 19 1 -1.6705 3.8781 -4.6563 20 6 -0.8953 5.7986 -4.0633 21 6 -3.2264 5.0169 -3.7415 22 6 -3.6196 5.9058 -2.7586 23 6 -4.9387 6.3118 -2.6813 24 6 -5.8665 5.8219 -3.5812 25 6 -5.4744 4.9289 -4.5609 26 6 -4.1544 4.5264 -4.6411 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 2.2720 2.1231 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0680 2.6143 -3.4687 36 1 -2.0738 3.0783 -2.3094 37 1 -1.4145 4.6181 -1.7072 38 1 0.1456 5.4812 -4.1264 39 1 -1.1833 6.2857 -4.9949 40 1 -1.0121 6.4985 -3.2359 41 1 -2.8954 6.2854 -2.0529 42 1 -5.2449 7.0098 -1.9161 43 1 -6.8976 6.1370 -3.5191 44 1 -6.1994 4.5458 -5.2638 45 1 -3.8482 3.8285 -5.4062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183791248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -60.670409 kcal Electronic energy + Delta-G solvation = -22604.970743 eV Core-core repulsion = 19392.328489 eV Total energy + Delta-G solvation = -3212.642254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81424 -40.20357 -37.25363 -36.47151 -34.25807 -33.02216 -31.93076 -31.71895 -29.77747 -28.84525 -26.23233 -24.90813 -23.80748 -23.19425 -21.84611 -21.00551 -20.58357 -18.88683 -17.78084 -17.34192 -17.10394 -16.67399 -16.24091 -16.02825 -15.73311 -15.12751 -14.85511 -14.64970 -14.41964 -14.31853 -14.10307 -13.77287 -13.59839 -13.29441 -13.16364 -13.06480 -12.90086 -12.71541 -12.63943 -12.38464 -12.14673 -12.06698 -12.05989 -11.75499 -11.57330 -11.48873 -11.33509 -11.02182 -10.60889 -10.45000 -9.76940 -9.55848 -9.53496 -8.15475 -6.32688 0.50951 0.55051 1.43763 1.44949 1.56718 1.97555 2.37799 2.74240 2.95446 3.13993 3.74219 3.86504 4.04737 4.19335 4.20518 4.26956 4.34577 4.47820 4.50421 4.57499 4.58303 4.61042 4.69879 4.73666 4.75444 4.82769 5.05792 5.07553 5.09262 5.12986 5.22766 5.24414 5.28064 5.42255 5.44589 5.45536 5.57828 5.64397 5.67408 5.68422 5.81672 5.82175 5.97185 6.18537 6.19290 6.77127 7.08865 7.35514 7.69989 8.90065 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.002871 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.039071 B = 9749.294781 C =10089.636768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.709 5.709 14 C 0.491 3.509 15 O -0.594 6.594 16 C -0.129 4.129 17 C -0.084 4.084 18 C -0.045 4.045 19 H 0.094 0.906 20 C -0.144 4.144 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.129 4.129 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 9.667 -16.918 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.358 5.358 14 C 0.279 3.721 15 O -0.476 6.476 16 C -0.169 4.169 17 C -0.122 4.122 18 C -0.063 4.063 19 H 0.113 0.887 20 C -0.201 4.201 21 C -0.085 4.085 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.523 9.551 -16.085 22.512 hybrid contribution 1.063 -0.175 0.640 1.253 sum -11.460 9.376 -15.444 21.396 Atomic orbital electron populations 1.21669 0.97061 0.98984 1.00226 1.21774 0.93662 0.99345 1.01169 1.18318 0.93522 0.89102 0.81757 0.98806 1.21635 0.91545 1.38605 1.06565 0.90994 1.25798 1.03320 0.94485 0.95097 1.70071 1.36975 1.38563 1.09915 0.85327 0.79181 0.77796 0.78206 1.18322 1.21120 1.20506 1.46303 1.15919 1.56261 1.17352 1.21466 0.81450 0.78381 0.90774 1.90651 1.52524 1.61366 1.43027 1.21753 0.98879 1.01945 0.94322 1.21246 0.94517 0.99435 0.97043 1.20166 0.90604 0.97966 0.97613 0.88740 1.21901 0.99741 0.96686 1.01817 1.20065 0.96027 0.96795 0.95606 1.21197 0.96710 0.98446 0.98580 1.21408 0.93371 1.00505 0.99710 1.21437 1.00320 0.98007 0.95600 1.21456 0.96348 0.97734 0.98954 1.21359 0.93409 1.00453 0.99499 0.95874 0.93562 0.93732 0.94014 0.91267 0.92694 0.76166 0.86815 0.86711 0.93400 0.93087 0.90863 0.91863 0.93166 0.86499 0.85012 0.84335 0.84102 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -4.99 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 3 C 0.28 14.25 2.24 44.25 0.10 14.35 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.69 5.29 84.65 0.45 1.14 16 8 N -0.92 -52.95 11.30 21.45 0.24 -52.71 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.71 -28.66 5.02 -446.09 -2.24 -30.90 16 14 C 0.49 18.75 6.40 87.66 0.56 19.31 16 15 O -0.59 -28.18 13.12 -3.02 -0.04 -28.22 16 16 C -0.13 -3.22 5.45 29.85 0.16 -3.06 16 17 C -0.08 -2.15 3.71 30.59 0.11 -2.04 16 18 C -0.05 -0.86 2.56 -11.54 -0.03 -0.88 16 19 H 0.09 1.48 7.88 -2.38 -0.02 1.46 16 20 C -0.14 -2.38 8.76 71.98 0.63 -1.75 16 21 C -0.08 -1.78 4.78 -19.87 -0.09 -1.87 16 22 C -0.13 -2.90 8.76 22.27 0.20 -2.70 16 23 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 24 C -0.14 -2.37 10.05 22.27 0.22 -2.14 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.40 9.67 22.27 0.22 -2.19 16 27 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 28 H 0.05 2.03 5.64 -2.39 -0.01 2.01 16 29 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.40 13.56 8.54 -92.71 -0.79 12.77 16 34 H 0.11 2.30 6.57 -2.39 -0.02 2.29 16 35 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.05 1.49 7.51 -2.39 -0.02 1.47 16 38 H 0.07 1.05 6.57 -2.38 -0.02 1.04 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.90 7.41 -2.39 -0.02 0.89 16 41 H 0.12 2.58 7.16 -2.91 -0.02 2.56 16 42 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.14 1.98 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -68.27 358.24 4.14 -64.13 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.17 Total: 29.13 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.98 Total: -25.60 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.00 Total: -83.61 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.04 Total: -28.22 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.27 4.14 -64.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds