Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46881 * 2 1 4 4 H 1.08999 * 109.47142 * 305.69383 * 3 2 1 5 5 C 1.50705 * 109.47170 * 185.69214 * 3 2 1 6 6 H 1.08003 * 119.99623 * 275.00833 * 5 3 2 7 7 C 1.37875 * 119.99854 * 95.00212 * 5 3 2 8 8 N 1.31514 * 119.99802 * 184.83000 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 4.83382 * 7 5 3 10 10 H 1.48500 * 109.47115 * 84.85689 * 9 7 5 11 11 H 1.48493 * 109.47433 * 204.85972 * 9 7 5 12 12 H 1.48504 * 109.47097 * 324.86179 * 9 7 5 13 13 N 1.46501 * 109.47411 * 65.69506 * 3 2 1 14 14 C 1.34783 * 119.99944 * 275.00176 * 13 3 2 15 15 O 1.21288 * 119.99693 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00168 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47100 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46889 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.47195 * 55.00280 * 18 17 16 20 20 C 1.52995 * 109.47187 * 294.99884 * 18 17 16 21 21 C 1.50701 * 109.46919 * 174.99813 * 18 17 16 22 22 C 1.38237 * 119.99955 * 59.72911 * 21 18 17 23 23 C 1.38229 * 120.00154 * 179.79263 * 22 21 18 24 24 C 1.38239 * 120.00013 * 0.42899 * 23 22 21 25 25 C 1.38235 * 119.99802 * 359.82122 * 24 23 22 26 26 C 1.38234 * 119.99989 * 239.99790 * 21 18 17 27 27 H 1.08999 * 109.46971 * 60.00123 * 1 2 3 28 28 H 1.09007 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47131 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.47147 * 239.99884 * 2 1 3 31 31 H 1.08999 * 109.46971 * 119.99876 * 2 1 3 32 32 H 0.96996 * 119.99702 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00186 * 94.99660 * 13 3 2 34 34 H 1.09007 * 109.47025 * 60.00081 * 16 14 13 35 35 H 1.09001 * 109.47450 * 299.99779 * 16 14 13 36 36 H 1.08995 * 109.47316 * 60.00060 * 17 16 14 37 37 H 1.09001 * 109.46973 * 299.99727 * 17 16 14 38 38 H 1.09001 * 109.46977 * 60.00274 * 20 18 17 39 39 H 1.08997 * 109.47327 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.46882 * 300.00314 * 20 18 17 41 41 H 1.07998 * 119.99657 * 359.97438 * 22 21 18 42 42 H 1.08005 * 120.00086 * 180.27697 * 23 22 21 43 43 H 1.08000 * 119.99996 * 179.83851 * 24 23 22 44 44 H 1.08000 * 120.00075 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00095 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7331 7 6 4.1157 1.5894 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7754 3.3741 -2.9863 11 1 3.7401 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6668 2.0925 1.2588 14 6 0.4508 2.6588 1.3901 15 8 -0.3342 2.6308 0.4660 16 6 0.0666 3.3269 2.6851 17 6 -1.3536 3.8843 2.5697 18 6 -1.7433 4.5631 3.8844 19 1 -0.9993 5.3184 4.1379 20 6 -1.8084 3.5170 4.9989 21 6 -3.0918 5.2182 3.7309 22 6 -4.1973 4.4558 3.4028 23 6 -5.4350 5.0559 3.2662 24 6 -5.5657 6.4199 3.4491 25 6 -4.4593 7.1831 3.7721 26 6 -3.2223 6.5823 3.9128 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8251 1.5978 -2.3974 33 1 2.2947 2.1151 1.9977 34 1 0.7604 4.1414 2.8935 35 1 0.1069 2.5990 3.4955 36 1 -2.0476 3.0701 2.3611 37 1 -1.3934 4.6124 1.7595 38 1 -0.8330 3.0432 5.1098 39 1 -2.0865 4.0005 5.9353 40 1 -2.5524 2.7618 4.7453 41 1 -4.0944 3.3908 3.2560 42 1 -6.2995 4.4596 3.0142 43 1 -6.5323 6.8892 3.3398 44 1 -4.5613 8.2488 3.9145 45 1 -2.3579 7.1785 4.1653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183791264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = -45.088623 kcal Electronic energy + Delta-G solvation = -22705.067684 eV Core-core repulsion = 19493.101107 eV Total energy + Delta-G solvation = -3211.966577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77362 -39.05585 -36.11835 -35.00250 -32.35102 -31.79060 -31.05565 -30.81118 -28.91691 -27.49967 -25.19891 -23.15719 -22.74948 -22.30177 -20.36655 -19.69685 -19.46616 -17.45140 -16.90463 -15.97755 -15.67884 -15.56022 -15.15928 -14.92531 -14.24980 -13.97329 -13.79522 -13.60061 -13.43558 -13.02129 -12.93949 -12.73551 -12.36747 -12.13604 -11.95783 -11.84396 -11.75891 -11.52646 -11.27838 -10.95185 -10.88597 -10.73761 -10.67283 -10.63333 -10.44298 -9.97402 -9.83510 -9.19824 -9.04640 -9.03287 -8.78856 -8.68536 -7.94794 -6.23177 -4.26465 1.23661 1.27463 3.26522 3.34596 3.38052 3.42537 3.65116 4.06997 4.33282 4.54210 4.64839 4.85754 4.95041 5.01253 5.05933 5.16469 5.22769 5.34005 5.39257 5.39465 5.48521 5.57624 5.75306 5.83083 5.85875 5.93404 5.95250 6.04118 6.06982 6.10073 6.24131 6.27662 6.34625 6.38848 6.41767 6.57381 6.67133 6.79940 6.88258 7.00786 7.02933 7.30667 7.39673 7.61571 8.16911 8.62361 8.78206 9.07164 9.39754 10.88648 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.003148 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.199646 B = 8891.638792 C = 8975.283528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.555 6.555 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.056 4.056 19 H 0.078 0.922 20 C -0.146 4.146 21 C -0.070 4.070 22 C -0.112 4.112 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.267 0.733 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.289 7.189 13.286 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.133 3.867 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.283 3.717 15 O -0.435 6.435 16 C -0.184 4.184 17 C -0.130 4.130 18 C -0.074 4.074 19 H 0.097 0.903 20 C -0.203 4.203 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.658 7.155 12.468 22.769 hybrid contribution -0.060 0.227 -0.519 0.570 sum -17.719 7.381 11.949 22.610 Atomic orbital electron populations 1.21899 0.97441 0.98718 1.02056 1.22066 0.93651 0.99555 1.01105 1.19140 0.95378 0.89058 0.83077 0.93232 1.21031 0.88792 1.51602 0.95404 0.90414 1.24941 0.94866 0.93720 0.98819 1.69885 1.09772 1.48502 1.24472 0.86902 0.81276 0.79620 0.82201 1.19910 1.21242 1.18353 1.46612 1.14645 1.56081 1.18077 1.20555 0.82573 0.79135 0.89402 1.90652 1.50939 1.60183 1.41745 1.21759 0.98423 1.01303 0.96958 1.21352 0.95215 1.00494 0.95901 1.20248 0.93312 0.97650 0.96189 0.90344 1.21904 1.02292 0.98462 0.97618 1.19915 0.95256 0.93583 0.98205 1.21052 0.92306 1.00106 0.99533 1.21150 0.97491 0.94996 1.00136 1.21117 0.98612 0.94212 1.00799 1.21121 0.92935 0.99689 1.00154 1.21096 0.97545 0.94285 1.00792 0.93160 0.95220 0.93112 0.92225 0.93099 0.92271 0.77485 0.89441 0.89358 0.91104 0.91140 0.91835 0.92786 0.92428 0.85996 0.86248 0.86414 0.86306 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.56 16 2 C -0.12 -2.71 5.59 -26.73 -0.15 -2.86 16 3 C 0.24 5.56 1.89 -69.08 -0.13 5.42 16 4 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 5 C -0.53 -14.19 9.05 -34.44 -0.31 -14.50 16 6 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 9 Si 0.87 21.71 26.99 -169.99 -4.59 17.13 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 13 N -0.71 -13.83 5.03 -54.93 -0.28 -14.11 16 14 C 0.50 9.12 6.43 -10.99 -0.07 9.05 16 15 O -0.56 -12.09 13.13 5.55 0.07 -12.02 16 16 C -0.14 -1.86 5.45 -27.88 -0.15 -2.02 16 17 C -0.09 -1.15 3.71 -26.73 -0.10 -1.25 16 18 C -0.06 -0.56 2.56 -91.77 -0.24 -0.79 16 19 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 20 C -0.15 -1.28 8.76 37.16 0.33 -0.96 16 21 C -0.07 -0.74 4.78 -104.62 -0.50 -1.24 16 22 C -0.11 -1.19 8.76 -39.58 -0.35 -1.54 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.19 9.67 -39.58 -0.38 -1.58 16 27 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 1.00 5.63 -51.93 -0.29 0.70 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.39 6.77 8.59 -40.82 -0.35 6.42 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.96 6.57 -51.93 -0.34 0.62 16 36 H 0.07 0.95 7.51 -51.93 -0.39 0.56 16 37 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.51 7.41 -51.93 -0.38 0.13 16 41 H 0.12 1.22 7.16 -52.49 -0.38 0.84 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.12 1.02 7.95 -52.49 -0.42 0.60 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -31.29 358.16 -8.98 -40.27 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.33 Total: 6.14 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -3.03 Total: -17.34 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.50 Total: -39.57 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.29 -8.98 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.821 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds