Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46881 * 2 1 4 4 H 1.08999 * 109.47142 * 305.69383 * 3 2 1 5 5 C 1.50705 * 109.47170 * 185.69214 * 3 2 1 6 6 H 1.08003 * 119.99623 * 275.00833 * 5 3 2 7 7 C 1.37875 * 119.99854 * 95.00212 * 5 3 2 8 8 N 1.31514 * 119.99802 * 184.83000 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 4.83382 * 7 5 3 10 10 H 1.48500 * 109.47115 * 84.85689 * 9 7 5 11 11 H 1.48493 * 109.47433 * 204.85972 * 9 7 5 12 12 H 1.48504 * 109.47097 * 324.86179 * 9 7 5 13 13 N 1.46501 * 109.47411 * 65.69506 * 3 2 1 14 14 C 1.34783 * 119.99944 * 275.00176 * 13 3 2 15 15 O 1.21288 * 119.99693 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00168 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47100 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46889 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.47195 * 55.00280 * 18 17 16 20 20 C 1.52995 * 109.47187 * 294.99884 * 18 17 16 21 21 C 1.50701 * 109.46919 * 174.99813 * 18 17 16 22 22 C 1.38237 * 119.99955 * 59.72911 * 21 18 17 23 23 C 1.38229 * 120.00154 * 179.79263 * 22 21 18 24 24 C 1.38239 * 120.00013 * 0.42899 * 23 22 21 25 25 C 1.38235 * 119.99802 * 359.82122 * 24 23 22 26 26 C 1.38234 * 119.99989 * 239.99790 * 21 18 17 27 27 H 1.08999 * 109.46971 * 60.00123 * 1 2 3 28 28 H 1.09007 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47131 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.47147 * 239.99884 * 2 1 3 31 31 H 1.08999 * 109.46971 * 119.99876 * 2 1 3 32 32 H 0.96996 * 119.99702 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00186 * 94.99660 * 13 3 2 34 34 H 1.09007 * 109.47025 * 60.00081 * 16 14 13 35 35 H 1.09001 * 109.47450 * 299.99779 * 16 14 13 36 36 H 1.08995 * 109.47316 * 60.00060 * 17 16 14 37 37 H 1.09001 * 109.46973 * 299.99727 * 17 16 14 38 38 H 1.09001 * 109.46977 * 60.00274 * 20 18 17 39 39 H 1.08997 * 109.47327 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.46882 * 300.00314 * 20 18 17 41 41 H 1.07998 * 119.99657 * 359.97438 * 22 21 18 42 42 H 1.08005 * 120.00086 * 180.27697 * 23 22 21 43 43 H 1.08000 * 119.99996 * 179.83851 * 24 23 22 44 44 H 1.08000 * 120.00075 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00095 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7331 7 6 4.1157 1.5894 -1.3856 8 7 5.4204 1.4965 -1.5217 9 14 3.0418 1.9171 -2.8785 10 1 2.7754 3.3741 -2.9863 11 1 3.7401 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6668 2.0925 1.2588 14 6 0.4508 2.6588 1.3901 15 8 -0.3342 2.6308 0.4660 16 6 0.0666 3.3269 2.6851 17 6 -1.3536 3.8843 2.5697 18 6 -1.7433 4.5631 3.8844 19 1 -0.9993 5.3184 4.1379 20 6 -1.8084 3.5170 4.9989 21 6 -3.0918 5.2182 3.7309 22 6 -4.1973 4.4558 3.4028 23 6 -5.4350 5.0559 3.2662 24 6 -5.5657 6.4199 3.4491 25 6 -4.4593 7.1831 3.7721 26 6 -3.2223 6.5823 3.9128 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8251 1.5978 -2.3974 33 1 2.2947 2.1151 1.9977 34 1 0.7604 4.1414 2.8935 35 1 0.1069 2.5990 3.4955 36 1 -2.0476 3.0701 2.3611 37 1 -1.3934 4.6124 1.7595 38 1 -0.8330 3.0432 5.1098 39 1 -2.0865 4.0005 5.9353 40 1 -2.5524 2.7618 4.7453 41 1 -4.0944 3.3908 3.2560 42 1 -6.2995 4.4596 3.0142 43 1 -6.5323 6.8892 3.3398 44 1 -4.5613 8.2488 3.9145 45 1 -2.3579 7.1785 4.1653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183791264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = -62.556957 kcal Electronic energy + Delta-G solvation = -22705.825168 eV Core-core repulsion = 19493.101107 eV Total energy + Delta-G solvation = -3212.724061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86631 -40.22930 -37.29218 -36.47285 -34.37483 -33.30547 -31.97281 -31.72674 -29.85487 -29.23281 -26.22114 -24.67240 -23.82303 -23.21681 -21.81624 -21.14918 -20.58957 -19.20890 -17.91673 -17.40666 -17.26184 -16.74337 -16.20283 -15.99001 -15.76059 -15.22723 -14.87664 -14.78821 -14.48342 -14.26220 -14.13100 -14.00646 -13.77765 -13.62835 -13.34688 -13.10366 -12.95174 -12.67957 -12.56483 -12.41328 -12.31851 -12.06571 -11.88330 -11.78634 -11.68046 -11.48913 -11.32366 -11.19326 -10.84196 -10.55887 -9.77491 -9.63114 -9.54086 -8.39622 -6.44457 0.50440 0.54490 1.27177 1.31813 1.42799 1.92208 2.25981 2.57556 2.93165 3.04938 3.73710 3.85407 4.02727 4.18847 4.19966 4.26897 4.32586 4.33975 4.42550 4.45196 4.55545 4.60144 4.61648 4.70081 4.74806 4.77903 4.87493 5.05988 5.08811 5.11162 5.13253 5.22523 5.24743 5.27374 5.29956 5.41759 5.44341 5.45385 5.56959 5.64041 5.66875 5.81413 5.84686 6.15553 6.17975 6.61216 7.01614 7.22133 7.60104 8.75578 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.003148 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.199646 B = 8891.638792 C = 8975.283528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.240 3.760 4 H 0.026 0.974 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.257 1.257 13 N -0.707 5.707 14 C 0.494 3.506 15 O -0.591 6.591 16 C -0.132 4.132 17 C -0.084 4.084 18 C -0.047 4.047 19 H 0.090 0.910 20 C -0.144 4.144 21 C -0.085 4.085 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.132 4.132 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.270 0.730 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.750 7.722 14.719 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.136 3.864 4 H 0.044 0.956 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.181 1.181 13 N -0.356 5.356 14 C 0.282 3.718 15 O -0.473 6.473 16 C -0.171 4.171 17 C -0.122 4.122 18 C -0.065 4.065 19 H 0.108 0.892 20 C -0.201 4.201 21 C -0.085 4.085 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.149 4.149 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.126 7.692 13.931 24.880 hybrid contribution 0.349 0.086 -0.900 0.969 sum -18.777 7.777 13.031 24.142 Atomic orbital electron populations 1.21761 0.95828 1.00179 1.01180 1.21976 0.94989 0.98108 1.01100 1.18863 0.93047 0.90255 0.84238 0.95580 1.21251 0.90455 1.50085 0.94497 0.92486 1.25579 0.95696 0.94107 1.01330 1.69977 1.11181 1.50604 1.25210 0.86091 0.79943 0.79166 0.79859 1.20186 1.20346 1.18139 1.46388 1.15761 1.56375 1.17116 1.21444 0.81342 0.78172 0.90818 1.90642 1.51805 1.61278 1.43562 1.21767 0.98842 1.02167 0.94364 1.21253 0.94743 0.99560 0.96673 1.20172 0.93368 0.97996 0.94974 0.89167 1.21895 1.02772 0.98063 0.97338 1.20066 0.95496 0.94090 0.98816 1.21202 0.92948 1.00307 1.00275 1.21423 0.97768 0.95674 1.00051 1.21441 0.99674 0.94123 1.00187 1.21448 0.92733 1.00872 0.99549 1.21358 0.98476 0.94260 1.00852 0.95131 0.92532 0.92866 0.93473 0.91879 0.92093 0.76026 0.87248 0.86397 0.92409 0.93580 0.90823 0.92069 0.92812 0.86109 0.84849 0.84376 0.84285 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.53 71.98 0.61 -4.47 16 2 C -0.12 -5.21 5.59 30.60 0.17 -5.03 16 3 C 0.24 11.21 1.89 44.25 0.08 11.29 16 4 H 0.03 1.36 4.73 -2.39 -0.01 1.35 16 5 C -0.52 -28.25 9.05 25.60 0.23 -28.02 16 6 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 7 C 0.03 1.87 5.47 84.65 0.46 2.33 16 8 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 9 Si 0.92 45.21 26.99 68.60 1.85 47.06 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.26 -12.38 6.82 99.48 0.68 -11.70 16 13 N -0.71 -26.88 5.03 -446.08 -2.24 -29.12 16 14 C 0.49 17.43 6.43 87.65 0.56 17.99 16 15 O -0.59 -25.47 13.13 -3.05 -0.04 -25.51 16 16 C -0.13 -3.08 5.45 29.85 0.16 -2.91 16 17 C -0.08 -2.00 3.71 30.60 0.11 -1.89 16 18 C -0.05 -0.84 2.56 -11.54 -0.03 -0.87 16 19 H 0.09 1.42 7.88 -2.38 -0.02 1.40 16 20 C -0.14 -2.18 8.76 71.98 0.63 -1.55 16 21 C -0.08 -1.70 4.78 -19.87 -0.09 -1.80 16 22 C -0.13 -2.66 8.76 22.27 0.20 -2.46 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.14 -2.30 10.05 22.27 0.22 -2.07 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.43 9.67 22.27 0.22 -2.21 16 27 H 0.03 1.27 7.89 -2.39 -0.02 1.25 16 28 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.40 13.33 8.59 -92.71 -0.80 12.53 16 34 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.12 2.12 6.57 -2.39 -0.02 2.10 16 36 H 0.06 1.52 7.51 -2.39 -0.02 1.50 16 37 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.07 0.96 6.57 -2.39 -0.02 0.94 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.86 7.41 -2.39 -0.02 0.84 16 41 H 0.12 2.39 7.16 -2.91 -0.02 2.37 16 42 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.13 1.99 7.95 -2.91 -0.02 1.97 16 Total: -1.00 -67.89 358.16 4.00 -63.89 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.14 Total: 24.86 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.99 Total: -25.81 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.94 Total: -84.49 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.85 Total: 47.06 kcal Total: -67.89 4.00 -63.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds