Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 H 1.09001 * 109.46848 * 54.99870 * 3 2 1 5 5 C 1.50700 * 109.47110 * 174.99908 * 3 2 1 6 6 H 1.07998 * 119.99717 * 120.00187 * 5 3 2 7 7 C 1.37871 * 120.00307 * 300.00108 * 5 3 2 8 8 N 1.31521 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47096 * 89.99731 * 9 7 5 11 11 H 1.48497 * 109.47101 * 209.99413 * 9 7 5 12 12 H 1.48496 * 109.46891 * 329.99729 * 9 7 5 13 13 N 1.46504 * 109.46827 * 295.00079 * 3 2 1 14 14 C 1.34765 * 120.00044 * 85.00080 * 13 3 2 15 15 O 1.21287 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99937 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.46904 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.47640 * 305.00028 * 17 16 14 19 19 C 1.53005 * 109.47174 * 65.00220 * 17 16 14 20 20 C 1.50704 * 109.47053 * 184.99804 * 17 16 14 21 21 C 1.38256 * 120.00092 * 305.76673 * 20 17 16 22 22 C 1.38209 * 119.99820 * 179.97438 * 21 20 17 23 23 C 1.38261 * 120.00368 * 359.84986 * 22 21 20 24 24 C 1.38221 * 119.99497 * 0.39928 * 23 22 21 25 25 C 1.38218 * 119.99584 * 125.78341 * 20 17 16 26 26 C 1.50694 * 120.00145 * 359.97438 * 25 20 17 27 27 H 1.09000 * 109.47030 * 60.00213 * 1 2 3 28 28 H 1.09006 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47266 * 300.00151 * 1 2 3 30 30 H 1.09004 * 109.47458 * 239.99596 * 2 1 3 31 31 H 1.09003 * 109.47323 * 120.00224 * 2 1 3 32 32 H 0.96996 * 119.99870 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99739 * 264.99853 * 13 3 2 34 34 H 1.08998 * 109.46681 * 60.00230 * 16 14 13 35 35 H 1.08996 * 109.47263 * 299.99802 * 16 14 13 36 36 H 1.08997 * 109.46748 * 59.99768 * 19 17 16 37 37 H 1.09000 * 109.47042 * 179.97438 * 19 17 16 38 38 H 1.08993 * 109.46984 * 299.99657 * 19 17 16 39 39 H 1.07998 * 120.00019 * 359.97438 * 21 20 17 40 40 H 1.07997 * 120.00126 * 180.02562 * 22 21 20 41 41 H 1.07992 * 120.00205 * 180.21791 * 23 22 21 42 42 H 1.07995 * 119.99637 * 179.80793 * 24 23 22 43 43 H 1.08999 * 109.47323 * 275.57972 * 26 25 20 44 44 H 1.08995 * 109.47282 * 35.58700 * 26 25 20 45 45 H 1.08999 * 109.47058 * 155.58198 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8811 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3098 2.1550 12 1 6.6135 0.8415 0.0278 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0367 3.3386 -2.6546 17 6 -1.3826 3.8942 -2.5212 18 1 -2.0595 3.0940 -2.2221 19 6 -1.4003 4.9994 -1.4633 20 6 -1.8272 4.4595 -3.8456 21 6 -1.0530 5.4085 -4.4871 22 6 -1.4606 5.9265 -5.7019 23 6 -2.6409 5.4934 -6.2772 24 6 -3.4174 4.5484 -5.6333 25 6 -3.0091 4.0294 -4.4187 26 6 -3.8528 2.9948 -3.7196 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0611 2.9499 33 1 2.2719 2.1231 -1.9978 34 1 0.0680 2.6144 -3.4686 35 1 0.7281 4.1540 -2.8668 36 1 -0.7234 5.7996 -1.7625 37 1 -2.4113 5.3956 -1.3686 38 1 -1.0788 4.5906 -0.5054 39 1 -0.1299 5.7451 -4.0389 40 1 -0.8557 6.6676 -6.2032 41 1 -2.9575 5.8956 -7.2281 42 1 -4.3408 4.2124 -6.0812 43 1 -3.4832 1.9990 -3.9640 44 1 -3.7974 3.1487 -2.6420 45 1 -4.8881 3.0885 -4.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183794504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -40.037536 kcal Electronic energy + Delta-G solvation = -23187.854778 eV Core-core repulsion = 19976.107233 eV Total energy + Delta-G solvation = -3211.747545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01607 -38.85849 -35.55366 -34.43208 -32.77359 -32.34880 -30.99740 -29.77522 -27.89490 -26.89333 -26.44511 -23.71639 -22.93137 -21.61503 -20.51299 -19.52889 -19.21113 -17.19838 -16.49496 -15.75231 -15.58417 -15.18123 -14.93263 -14.66041 -14.24335 -13.98603 -13.60661 -13.30827 -13.14454 -12.96612 -12.63761 -12.46261 -12.34477 -12.20261 -11.84442 -11.68700 -11.39366 -11.25264 -11.23662 -11.01559 -10.91041 -10.83442 -10.58785 -10.39694 -10.27524 -10.13419 -9.59875 -9.04266 -8.89054 -8.78832 -8.57375 -8.47568 -7.75892 -6.11462 -4.20707 1.31206 1.34173 3.24502 3.31390 3.33051 3.48186 3.69543 4.14303 4.39061 4.73232 4.79882 4.91528 4.95947 5.14998 5.19828 5.25480 5.29433 5.44174 5.50539 5.58976 5.66096 5.77764 5.80208 5.83607 5.95088 6.03515 6.12795 6.22413 6.30338 6.40845 6.44980 6.47189 6.48704 6.63665 6.68710 6.74851 6.98222 7.06220 7.22006 7.39592 7.51222 7.63946 7.76234 7.92723 8.20374 8.72525 8.80354 9.20553 9.47272 10.93784 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026970 B = 0.003431 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.935129 B = 8159.874341 C = 8709.208089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.547 6.547 16 C -0.136 4.136 17 C -0.039 4.039 18 H 0.091 0.909 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.082 4.082 26 C -0.120 4.120 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 7.694 -14.516 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.058 4.058 18 H 0.109 0.891 19 C -0.204 4.204 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.082 4.082 26 C -0.176 4.176 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.081 7.552 -13.631 19.121 hybrid contribution 1.406 0.014 -0.438 1.472 sum -9.676 7.566 -14.068 18.676 Atomic orbital electron populations 1.21829 0.98346 0.97919 1.01241 1.21927 0.92625 0.99915 1.02158 1.18749 0.94055 0.89140 0.81196 0.93365 1.21251 0.90871 1.38888 1.06214 0.92174 1.24886 0.98535 0.94845 0.95433 1.69898 1.35074 1.37684 1.09325 0.86475 0.84980 0.77629 0.78172 1.20592 1.21092 1.19874 1.46518 1.14810 1.56072 1.18423 1.20333 0.82656 0.79242 0.89136 1.90624 1.51348 1.59892 1.40806 1.21767 0.97422 1.01061 0.97336 1.19951 0.95933 0.98680 0.91211 0.89076 1.21938 1.01017 0.97128 1.00270 1.19883 0.94284 0.96548 0.96308 1.21033 0.99781 0.96886 0.95243 1.21097 0.96903 1.00389 0.96034 1.21071 0.95383 0.98147 0.99866 1.20998 0.99955 0.97865 0.95129 1.19819 0.95357 0.97967 0.95096 1.20870 0.98420 0.97385 1.00950 0.94230 0.96012 0.93161 0.95168 0.88400 0.92606 0.78098 0.89729 0.89604 0.93464 0.93340 0.89633 0.86040 0.86375 0.86484 0.86388 0.91032 0.90710 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.15 0.32 -2.69 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.65 11.30 55.43 0.63 -24.02 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.35 5.02 -54.93 -0.28 -14.63 16 14 C 0.50 9.40 6.12 -10.99 -0.07 9.33 16 15 O -0.55 -11.89 11.10 5.55 0.06 -11.83 16 16 C -0.14 -1.90 4.83 -27.88 -0.13 -2.04 16 17 C -0.04 -0.53 1.94 -91.77 -0.18 -0.71 16 18 H 0.09 1.32 5.53 -51.93 -0.29 1.04 16 19 C -0.15 -2.06 8.80 37.16 0.33 -1.73 16 20 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 21 C -0.11 -1.26 8.79 -39.59 -0.35 -1.60 16 22 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 25 C -0.08 -0.94 5.88 -104.63 -0.62 -1.56 16 26 C -0.12 -1.22 9.15 36.00 0.33 -0.89 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.87 8.54 -40.82 -0.35 6.52 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.07 7.29 -51.93 -0.38 0.70 16 36 H 0.05 0.61 7.75 -51.93 -0.40 0.20 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.44 5.95 -51.93 -0.31 1.13 16 39 H 0.12 1.25 7.18 -52.49 -0.38 0.88 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.81 6.54 -51.93 -0.34 0.47 16 45 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -29.24 353.34 -9.22 -38.46 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.19 Total: 8.65 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.74 Total: -17.49 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.35 Total: -38.65 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.06 Total: -11.83 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.24 -9.22 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds