Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 H 1.09001 * 109.46848 * 54.99870 * 3 2 1 5 5 C 1.50700 * 109.47110 * 174.99908 * 3 2 1 6 6 H 1.07998 * 119.99717 * 120.00187 * 5 3 2 7 7 C 1.37871 * 120.00307 * 300.00108 * 5 3 2 8 8 N 1.31521 * 119.99877 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47096 * 89.99731 * 9 7 5 11 11 H 1.48497 * 109.47101 * 209.99413 * 9 7 5 12 12 H 1.48496 * 109.46891 * 329.99729 * 9 7 5 13 13 N 1.46504 * 109.46827 * 295.00079 * 3 2 1 14 14 C 1.34765 * 120.00044 * 85.00080 * 13 3 2 15 15 O 1.21287 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99937 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.46904 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.47640 * 305.00028 * 17 16 14 19 19 C 1.53005 * 109.47174 * 65.00220 * 17 16 14 20 20 C 1.50704 * 109.47053 * 184.99804 * 17 16 14 21 21 C 1.38256 * 120.00092 * 305.76673 * 20 17 16 22 22 C 1.38209 * 119.99820 * 179.97438 * 21 20 17 23 23 C 1.38261 * 120.00368 * 359.84986 * 22 21 20 24 24 C 1.38221 * 119.99497 * 0.39928 * 23 22 21 25 25 C 1.38218 * 119.99584 * 125.78341 * 20 17 16 26 26 C 1.50694 * 120.00145 * 359.97438 * 25 20 17 27 27 H 1.09000 * 109.47030 * 60.00213 * 1 2 3 28 28 H 1.09006 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47266 * 300.00151 * 1 2 3 30 30 H 1.09004 * 109.47458 * 239.99596 * 2 1 3 31 31 H 1.09003 * 109.47323 * 120.00224 * 2 1 3 32 32 H 0.96996 * 119.99870 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99739 * 264.99853 * 13 3 2 34 34 H 1.08998 * 109.46681 * 60.00230 * 16 14 13 35 35 H 1.08996 * 109.47263 * 299.99802 * 16 14 13 36 36 H 1.08997 * 109.46748 * 59.99768 * 19 17 16 37 37 H 1.09000 * 109.47042 * 179.97438 * 19 17 16 38 38 H 1.08993 * 109.46984 * 299.99657 * 19 17 16 39 39 H 1.07998 * 120.00019 * 359.97438 * 21 20 17 40 40 H 1.07997 * 120.00126 * 180.02562 * 22 21 20 41 41 H 1.07992 * 120.00205 * 180.21791 * 23 22 21 42 42 H 1.07995 * 119.99637 * 179.80793 * 24 23 22 43 43 H 1.08999 * 109.47323 * 275.57972 * 26 25 20 44 44 H 1.08995 * 109.47282 * 35.58700 * 26 25 20 45 45 H 1.08999 * 109.47058 * 155.58198 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8811 1.3817 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3098 2.1550 12 1 6.6135 0.8415 0.0278 13 7 1.6524 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0367 3.3386 -2.6546 17 6 -1.3826 3.8942 -2.5212 18 1 -2.0595 3.0940 -2.2221 19 6 -1.4003 4.9994 -1.4633 20 6 -1.8272 4.4595 -3.8456 21 6 -1.0530 5.4085 -4.4871 22 6 -1.4606 5.9265 -5.7019 23 6 -2.6409 5.4934 -6.2772 24 6 -3.4174 4.5484 -5.6333 25 6 -3.0091 4.0294 -4.4187 26 6 -3.8528 2.9948 -3.7196 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0611 2.9499 33 1 2.2719 2.1231 -1.9978 34 1 0.0680 2.6144 -3.4686 35 1 0.7281 4.1540 -2.8668 36 1 -0.7234 5.7996 -1.7625 37 1 -2.4113 5.3956 -1.3686 38 1 -1.0788 4.5906 -0.5054 39 1 -0.1299 5.7451 -4.0389 40 1 -0.8557 6.6676 -6.2032 41 1 -2.9575 5.8956 -7.2281 42 1 -4.3408 4.2124 -6.0812 43 1 -3.4832 1.9990 -3.9640 44 1 -3.7974 3.1487 -2.6420 45 1 -4.8881 3.0885 -4.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183794504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -55.185126 kcal Electronic energy + Delta-G solvation = -23188.511627 eV Core-core repulsion = 19976.107233 eV Total energy + Delta-G solvation = -3212.404394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12282 -40.16808 -37.15445 -35.73623 -34.25590 -33.57624 -32.80390 -30.72772 -29.43412 -28.10047 -27.68036 -25.08166 -24.45602 -22.63739 -21.89414 -21.07036 -20.56625 -18.82469 -17.75704 -17.15811 -16.86968 -16.71731 -16.29348 -15.87278 -15.58847 -14.98377 -14.87615 -14.65974 -14.54045 -14.08791 -13.89651 -13.73277 -13.57381 -13.37042 -13.16599 -13.11387 -12.89258 -12.82920 -12.70268 -12.58434 -12.15449 -12.14558 -12.12204 -11.95964 -11.57856 -11.51102 -11.36887 -11.02923 -10.55685 -10.38777 -9.62288 -9.52762 -9.40110 -8.14939 -6.32016 0.50821 0.55719 1.44737 1.44909 1.55544 1.97089 2.37866 2.72631 2.92939 3.14403 3.78394 3.83983 4.09706 4.12250 4.19428 4.32047 4.33507 4.50728 4.51274 4.56984 4.59576 4.65517 4.71789 4.79099 4.80930 4.86964 4.90102 4.98183 5.06314 5.10867 5.21862 5.28795 5.32080 5.36528 5.43265 5.46890 5.58826 5.67921 5.68683 5.71154 5.83047 5.86637 5.97853 6.20097 6.21098 6.77354 7.08911 7.35950 7.69424 8.90189 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026970 B = 0.003431 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.935129 B = 8159.874341 C = 8709.208089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.710 5.710 14 C 0.497 3.503 15 O -0.579 6.579 16 C -0.122 4.122 17 C -0.032 4.032 18 H 0.076 0.924 19 C -0.141 4.141 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.119 4.119 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 8.522 -17.388 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.185 1.185 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.461 6.461 16 C -0.162 4.162 17 C -0.051 4.051 18 H 0.094 0.906 19 C -0.198 4.198 20 C -0.085 4.085 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.097 4.097 26 C -0.175 4.175 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.770 8.394 -16.542 21.450 hybrid contribution 1.228 -0.192 0.438 1.317 sum -9.542 8.203 -16.105 20.438 Atomic orbital electron populations 1.21660 0.96874 0.98986 1.00353 1.21777 0.93845 0.99326 1.01051 1.18305 0.93386 0.89085 0.81666 0.98453 1.21612 0.91697 1.38718 1.06576 0.91177 1.25763 1.03200 0.94461 0.95105 1.70053 1.36986 1.38471 1.09850 0.85404 0.79322 0.77386 0.78577 1.20464 1.21032 1.18469 1.46312 1.15903 1.56338 1.17385 1.21166 0.81555 0.78400 0.90391 1.90624 1.52153 1.60766 1.42519 1.21732 0.98179 1.01643 0.94621 1.19813 0.95205 0.97985 0.92107 0.90555 1.21848 1.01521 0.97603 0.98873 1.19746 0.95254 0.97736 0.95750 1.21184 1.00039 0.96802 0.95847 1.21398 0.97297 1.00528 0.95615 1.21435 0.94947 0.97456 1.00642 1.21278 1.00790 0.97768 0.94656 1.20013 0.95366 0.98429 0.95846 1.20862 0.99394 0.97186 1.00069 0.93513 0.93853 0.95569 0.94294 0.91250 0.92685 0.76424 0.87818 0.87447 0.92289 0.92770 0.92999 0.85401 0.84263 0.84021 0.84476 0.91087 0.92064 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.24 2.24 44.24 0.10 14.34 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.96 8.73 25.60 0.22 -28.73 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.55 11.30 21.45 0.24 -52.30 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 13 N -0.71 -28.72 5.02 -446.09 -2.24 -30.96 16 14 C 0.50 18.74 6.12 87.66 0.54 19.28 16 15 O -0.58 -26.12 11.10 -3.05 -0.03 -26.15 16 16 C -0.12 -3.27 4.83 29.85 0.14 -3.12 16 17 C -0.03 -0.86 1.94 -11.54 -0.02 -0.88 16 18 H 0.08 2.25 5.53 -2.39 -0.01 2.23 16 19 C -0.14 -3.99 8.80 71.98 0.63 -3.36 16 20 C -0.08 -1.94 4.78 -19.86 -0.10 -2.03 16 21 C -0.12 -2.44 8.79 22.27 0.20 -2.24 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.26 9.68 22.27 0.22 -2.05 16 25 C -0.10 -2.05 5.88 -19.87 -0.12 -2.17 16 26 C -0.12 -2.31 9.15 71.23 0.65 -1.66 16 27 H 0.05 2.00 5.64 -2.39 -0.01 1.99 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.40 13.82 8.54 -92.71 -0.79 13.03 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.11 2.45 7.29 -2.39 -0.02 2.43 16 36 H 0.06 1.48 7.75 -2.39 -0.02 1.46 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.82 5.95 -2.39 -0.01 1.81 16 39 H 0.13 2.32 7.18 -2.91 -0.02 2.30 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.34 6.54 -2.39 -0.02 1.32 16 45 H 0.08 1.23 8.05 -2.39 -0.02 1.21 16 Total: -1.00 -64.86 353.34 4.32 -60.54 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.18 Total: 30.61 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.14 Total: -25.89 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -2.00 Total: -83.27 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.03 Total: -26.15 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.86 4.32 -60.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.356 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds