Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47020 * 2 1 4 4 H 1.08994 * 109.47530 * 306.04814 * 3 2 1 5 5 C 1.50704 * 109.47230 * 186.04773 * 3 2 1 6 6 H 1.07999 * 119.99816 * 245.11486 * 5 3 2 7 7 C 1.37879 * 120.00014 * 65.11457 * 5 3 2 8 8 N 1.31514 * 119.99740 * 7.64891 * 7 5 3 9 9 Si 1.86794 * 119.99942 * 187.64837 * 7 5 3 10 10 H 1.48505 * 109.47024 * 94.98551 * 9 7 5 11 11 H 1.48498 * 109.47354 * 214.98471 * 9 7 5 12 12 H 1.48503 * 109.47539 * 334.98633 * 9 7 5 13 13 N 1.46505 * 109.47021 * 66.05064 * 3 2 1 14 14 C 1.34779 * 119.99505 * 274.99506 * 13 3 2 15 15 O 1.21276 * 120.00494 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99502 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47029 * 180.02562 * 16 14 13 18 18 H 1.09010 * 109.46652 * 304.99713 * 17 16 14 19 19 C 1.52998 * 109.47247 * 64.99861 * 17 16 14 20 20 C 1.50705 * 109.47282 * 185.00358 * 17 16 14 21 21 C 1.38254 * 119.99479 * 303.46142 * 20 17 16 22 22 C 1.38213 * 119.99858 * 179.97438 * 21 20 17 23 23 C 1.38259 * 119.99910 * 359.85264 * 22 21 20 24 24 C 1.38223 * 119.99778 * 0.40124 * 23 22 21 25 25 C 1.38207 * 119.99911 * 123.48004 * 20 17 16 26 26 C 1.50698 * 120.00196 * 359.97438 * 25 20 17 27 27 H 1.08998 * 109.47028 * 60.00249 * 1 2 3 28 28 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46997 * 299.99872 * 1 2 3 30 30 H 1.09002 * 109.47509 * 240.00094 * 2 1 3 31 31 H 1.09003 * 109.46954 * 120.00247 * 2 1 3 32 32 H 0.96997 * 119.99716 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00524 * 95.00129 * 13 3 2 34 34 H 1.09000 * 109.47463 * 60.00741 * 16 14 13 35 35 H 1.09006 * 109.47665 * 300.00079 * 16 14 13 36 36 H 1.09001 * 109.47066 * 300.00165 * 19 17 16 37 37 H 1.08997 * 109.46844 * 59.99988 * 19 17 16 38 38 H 1.08999 * 109.46918 * 180.02562 * 19 17 16 39 39 H 1.08000 * 120.00500 * 359.97438 * 21 20 17 40 40 H 1.08001 * 120.00426 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.00616 * 180.21061 * 23 22 21 42 42 H 1.08001 * 119.99743 * 179.80902 * 24 23 22 43 43 H 1.08992 * 109.46948 * 276.03864 * 26 25 20 44 44 H 1.08995 * 109.47236 * 36.04519 * 26 25 20 45 45 H 1.09002 * 109.46779 * 156.04261 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8308 5 6 3.5395 1.4452 -0.1497 6 1 4.1618 1.8097 0.6542 7 6 4.1171 0.9823 -1.3130 8 7 3.3624 0.6801 -2.3468 9 14 5.9714 0.7844 -1.4206 10 1 6.3391 -0.6178 -1.0983 11 1 6.4251 1.1114 -2.7963 12 1 6.6243 1.7023 -0.4528 13 7 1.6741 2.0898 1.2623 14 6 0.4590 2.6559 1.4018 15 8 -0.3317 2.6292 0.4827 16 6 0.0824 3.3212 2.7005 17 6 -1.3389 3.8779 2.5950 18 1 -1.4065 4.5401 1.7318 19 6 -2.3282 2.7225 2.4304 20 6 -1.6706 4.6489 3.8467 21 6 -1.5812 4.0336 5.0816 22 6 -1.8849 4.7408 6.2296 23 6 -2.2752 6.0643 6.1433 24 6 -2.3697 6.6778 4.9083 25 6 -2.0646 5.9708 3.7600 26 6 -2.1619 6.6414 2.4140 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7687 0.3548 -3.1653 33 1 2.3063 2.1110 1.9977 34 1 0.7774 4.1353 2.9067 35 1 0.1274 2.5916 3.5091 36 1 -2.0882 2.1649 1.5250 37 1 -2.2604 2.0604 3.2935 38 1 -3.3407 3.1191 2.3548 39 1 -1.2740 3.0004 5.1492 40 1 -1.8147 4.2604 7.1943 41 1 -2.5093 6.6180 7.0405 42 1 -2.6776 7.7108 4.8406 43 1 -1.1786 7.0071 2.1184 44 1 -2.5198 5.9239 1.6757 45 1 -2.8577 7.4782 2.4745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183794522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -41.482444 kcal Electronic energy + Delta-G solvation = -23190.491148 eV Core-core repulsion = 19978.680947 eV Total energy + Delta-G solvation = -3211.810201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01729 -38.86306 -35.53535 -34.43058 -32.76698 -32.32908 -31.09863 -29.79873 -27.82760 -26.88455 -26.49549 -23.74568 -22.91023 -21.59573 -20.53171 -19.58285 -19.21798 -17.20555 -16.47816 -15.75965 -15.64434 -15.12203 -14.83568 -14.74604 -14.24317 -13.93468 -13.72422 -13.30113 -13.13816 -12.83439 -12.65606 -12.55054 -12.44368 -12.12983 -11.91609 -11.59482 -11.40446 -11.33347 -11.24968 -11.02242 -10.91521 -10.78983 -10.58333 -10.39099 -10.32100 -10.16065 -9.65984 -9.07102 -8.88588 -8.77815 -8.56626 -8.47262 -7.78275 -6.13505 -4.19420 1.31457 1.34294 3.24503 3.31997 3.33707 3.48034 3.69685 4.14755 4.39453 4.73567 4.79994 4.91676 4.96047 5.14736 5.19525 5.26008 5.29506 5.44427 5.50672 5.59599 5.67203 5.78367 5.80050 5.82118 5.94669 6.03819 6.13551 6.22309 6.30285 6.36319 6.40225 6.45091 6.48512 6.59853 6.65789 6.74723 6.98226 7.01948 7.19197 7.35523 7.47081 7.63536 7.73837 7.87930 8.10769 8.72976 8.81672 9.20524 9.47408 10.94413 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.003397 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.005591 B = 8241.251984 C = 8515.157848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.547 6.547 16 C -0.135 4.135 17 C -0.040 4.040 18 H 0.092 0.908 19 C -0.147 4.147 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.082 4.082 26 C -0.120 4.120 27 H 0.050 0.950 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 8.152 14.656 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.176 4.176 17 C -0.058 4.058 18 H 0.110 0.890 19 C -0.204 4.204 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.082 4.082 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.464 8.050 13.764 19.072 hybrid contribution 1.415 -0.167 0.441 1.491 sum -9.049 7.883 14.205 18.596 Atomic orbital electron populations 1.21848 0.98056 0.98053 1.01559 1.21846 0.92988 0.99958 1.01115 1.18759 0.94451 0.89014 0.81087 0.92741 1.21227 0.90829 1.43766 1.01634 0.92160 1.24888 0.98363 0.95154 0.95156 1.69978 1.35264 1.43607 1.02877 0.86509 0.85136 0.78451 0.77463 1.20578 1.21145 1.19847 1.46511 1.14561 1.56316 1.18432 1.20337 0.82699 0.79222 0.89117 1.90624 1.50065 1.59940 1.41970 1.21763 0.97459 1.01055 0.97275 1.19957 0.93833 0.97131 0.94906 0.89023 1.21950 0.97806 0.97483 1.03159 1.19875 0.98554 0.93520 0.95078 1.21021 1.00039 0.99926 0.91944 1.21094 1.00390 0.94715 0.98254 1.21071 1.00782 0.95233 0.97371 1.21004 1.01194 0.99574 0.92167 1.19825 0.99093 0.93667 0.95614 1.20875 1.02420 1.00359 0.93997 0.93046 0.95949 0.93806 0.90152 0.94912 0.92625 0.78115 0.89637 0.89697 0.89602 0.93508 0.93327 0.86088 0.86389 0.86484 0.86375 0.90975 0.90700 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.54 37.16 0.32 -2.67 16 2 C -0.12 -2.85 5.50 -26.73 -0.15 -3.00 16 3 C 0.27 6.65 2.10 -69.08 -0.14 6.50 16 4 H 0.05 1.58 7.54 -51.93 -0.39 1.19 16 5 C -0.54 -14.08 8.67 -34.44 -0.30 -14.38 16 6 H 0.06 1.52 7.73 -52.49 -0.41 1.12 16 7 C 0.07 1.83 5.18 -17.82 -0.09 1.73 16 8 N -0.88 -24.82 12.05 55.43 0.67 -24.15 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.71 -14.31 5.03 -54.93 -0.28 -14.58 16 14 C 0.50 9.37 6.17 -10.99 -0.07 9.31 16 15 O -0.55 -11.86 11.11 5.56 0.06 -11.80 16 16 C -0.14 -1.90 4.87 -27.88 -0.14 -2.03 16 17 C -0.04 -0.54 1.97 -91.77 -0.18 -0.72 16 18 H 0.09 1.34 5.48 -51.92 -0.28 1.06 16 19 C -0.15 -2.03 8.78 37.16 0.33 -1.70 16 20 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 21 C -0.11 -1.25 8.77 -39.58 -0.35 -1.59 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 25 C -0.08 -0.95 5.88 -104.63 -0.62 -1.56 16 26 C -0.12 -1.24 9.16 36.00 0.33 -0.91 16 27 H 0.05 1.20 7.91 -51.93 -0.41 0.79 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.91 5.62 -51.93 -0.29 0.62 16 30 H 0.08 2.11 6.68 -51.93 -0.35 1.77 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.83 8.53 -40.82 -0.35 6.48 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.04 7.39 -51.93 -0.38 0.66 16 36 H 0.09 1.42 5.95 -51.93 -0.31 1.11 16 37 H 0.05 0.59 7.60 -51.93 -0.39 0.19 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.12 1.23 7.17 -52.49 -0.38 0.85 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 45 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -29.45 354.53 -9.18 -38.62 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.22 Total: 8.33 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.73 Total: -17.31 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.39 Total: -38.73 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.06 Total: -11.80 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.45 -9.18 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.859 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds