Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47020 * 2 1 4 4 H 1.08994 * 109.47530 * 306.04814 * 3 2 1 5 5 C 1.50704 * 109.47230 * 186.04773 * 3 2 1 6 6 H 1.07999 * 119.99816 * 245.11486 * 5 3 2 7 7 C 1.37879 * 120.00014 * 65.11457 * 5 3 2 8 8 N 1.31514 * 119.99740 * 7.64891 * 7 5 3 9 9 Si 1.86794 * 119.99942 * 187.64837 * 7 5 3 10 10 H 1.48505 * 109.47024 * 94.98551 * 9 7 5 11 11 H 1.48498 * 109.47354 * 214.98471 * 9 7 5 12 12 H 1.48503 * 109.47539 * 334.98633 * 9 7 5 13 13 N 1.46505 * 109.47021 * 66.05064 * 3 2 1 14 14 C 1.34779 * 119.99505 * 274.99506 * 13 3 2 15 15 O 1.21276 * 120.00494 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99502 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.47029 * 180.02562 * 16 14 13 18 18 H 1.09010 * 109.46652 * 304.99713 * 17 16 14 19 19 C 1.52998 * 109.47247 * 64.99861 * 17 16 14 20 20 C 1.50705 * 109.47282 * 185.00358 * 17 16 14 21 21 C 1.38254 * 119.99479 * 303.46142 * 20 17 16 22 22 C 1.38213 * 119.99858 * 179.97438 * 21 20 17 23 23 C 1.38259 * 119.99910 * 359.85264 * 22 21 20 24 24 C 1.38223 * 119.99778 * 0.40124 * 23 22 21 25 25 C 1.38207 * 119.99911 * 123.48004 * 20 17 16 26 26 C 1.50698 * 120.00196 * 359.97438 * 25 20 17 27 27 H 1.08998 * 109.47028 * 60.00249 * 1 2 3 28 28 H 1.09000 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46997 * 299.99872 * 1 2 3 30 30 H 1.09002 * 109.47509 * 240.00094 * 2 1 3 31 31 H 1.09003 * 109.46954 * 120.00247 * 2 1 3 32 32 H 0.96997 * 119.99716 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00524 * 95.00129 * 13 3 2 34 34 H 1.09000 * 109.47463 * 60.00741 * 16 14 13 35 35 H 1.09006 * 109.47665 * 300.00079 * 16 14 13 36 36 H 1.09001 * 109.47066 * 300.00165 * 19 17 16 37 37 H 1.08997 * 109.46844 * 59.99988 * 19 17 16 38 38 H 1.08999 * 109.46918 * 180.02562 * 19 17 16 39 39 H 1.08000 * 120.00500 * 359.97438 * 21 20 17 40 40 H 1.08001 * 120.00426 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.00616 * 180.21061 * 23 22 21 42 42 H 1.08001 * 119.99743 * 179.80902 * 24 23 22 43 43 H 1.08992 * 109.46948 * 276.03864 * 26 25 20 44 44 H 1.08995 * 109.47236 * 36.04519 * 26 25 20 45 45 H 1.09002 * 109.46779 * 156.04261 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8308 5 6 3.5395 1.4452 -0.1497 6 1 4.1618 1.8097 0.6542 7 6 4.1171 0.9823 -1.3130 8 7 3.3624 0.6801 -2.3468 9 14 5.9714 0.7844 -1.4206 10 1 6.3391 -0.6178 -1.0983 11 1 6.4251 1.1114 -2.7963 12 1 6.6243 1.7023 -0.4528 13 7 1.6741 2.0898 1.2623 14 6 0.4590 2.6559 1.4018 15 8 -0.3317 2.6292 0.4827 16 6 0.0824 3.3212 2.7005 17 6 -1.3389 3.8779 2.5950 18 1 -1.4065 4.5401 1.7318 19 6 -2.3282 2.7225 2.4304 20 6 -1.6706 4.6489 3.8467 21 6 -1.5812 4.0336 5.0816 22 6 -1.8849 4.7408 6.2296 23 6 -2.2752 6.0643 6.1433 24 6 -2.3697 6.6778 4.9083 25 6 -2.0646 5.9708 3.7600 26 6 -2.1619 6.6414 2.4140 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7687 0.3548 -3.1653 33 1 2.3063 2.1110 1.9977 34 1 0.7774 4.1353 2.9067 35 1 0.1274 2.5916 3.5091 36 1 -2.0882 2.1649 1.5250 37 1 -2.2604 2.0604 3.2935 38 1 -3.3407 3.1191 2.3548 39 1 -1.2740 3.0004 5.1492 40 1 -1.8147 4.2604 7.1943 41 1 -2.5093 6.6180 7.0405 42 1 -2.6776 7.7108 4.8406 43 1 -1.1786 7.0071 2.1184 44 1 -2.5198 5.9239 1.6757 45 1 -2.8577 7.4782 2.4745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183794522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -56.918363 kcal Electronic energy + Delta-G solvation = -23191.160500 eV Core-core repulsion = 19978.680947 eV Total energy + Delta-G solvation = -3212.479553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12452 -40.16600 -37.12719 -35.72918 -34.24830 -33.57460 -32.88942 -30.74186 -29.35608 -28.13521 -27.68263 -25.12734 -24.40348 -22.61909 -21.93480 -21.08511 -20.56694 -18.83298 -17.72675 -17.24758 -16.88800 -16.59021 -16.25488 -15.91606 -15.63776 -14.99612 -14.89206 -14.58845 -14.50131 -14.13316 -13.89395 -13.84331 -13.44328 -13.40100 -13.23650 -13.13515 -12.90170 -12.83577 -12.68279 -12.56235 -12.17071 -12.13045 -12.05132 -12.01585 -11.58074 -11.55028 -11.36206 -11.05185 -10.55799 -10.36746 -9.62082 -9.54320 -9.40147 -8.18100 -6.31584 0.50981 0.55894 1.43941 1.44607 1.55133 1.97308 2.37972 2.72499 2.93360 3.13480 3.78785 3.84311 4.09611 4.12553 4.19913 4.32534 4.33898 4.49181 4.50377 4.56833 4.57658 4.65855 4.72370 4.76698 4.79996 4.86849 4.90448 4.98168 5.06375 5.11040 5.22526 5.27386 5.32605 5.36224 5.41939 5.49667 5.57398 5.66469 5.68077 5.70590 5.78870 5.86928 5.98169 6.12176 6.21017 6.78808 7.09035 7.35753 7.69674 8.90178 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.003397 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.005591 B = 8241.251984 C = 8515.157848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.710 5.710 14 C 0.497 3.503 15 O -0.579 6.579 16 C -0.121 4.121 17 C -0.034 4.034 18 H 0.073 0.927 19 C -0.141 4.141 20 C -0.085 4.085 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.098 4.098 26 C -0.119 4.119 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 8.714 17.712 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.460 6.460 16 C -0.161 4.161 17 C -0.052 4.052 18 H 0.091 0.909 19 C -0.199 4.199 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.098 4.098 26 C -0.175 4.175 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.072 8.625 16.861 21.451 hybrid contribution 1.213 -0.281 -0.485 1.337 sum -8.858 8.344 16.376 20.402 Atomic orbital electron populations 1.21684 0.96577 0.99178 1.00652 1.21696 0.94205 0.99125 1.00176 1.18313 0.93627 0.89115 0.81556 0.98090 1.21602 0.91733 1.43416 1.01941 0.91150 1.25766 1.03022 0.94831 0.94807 1.70128 1.37288 1.44618 1.03455 0.85428 0.79455 0.78705 0.77334 1.19878 1.21402 1.18657 1.46308 1.15663 1.56604 1.17357 1.21169 0.81580 0.78356 0.90417 1.90625 1.50891 1.60836 1.43685 1.21725 0.98059 1.01601 0.94733 1.19822 0.93296 0.96761 0.95361 0.90866 1.21861 0.98209 0.97616 1.02165 1.19749 1.00223 0.93870 0.94643 1.21185 1.00181 1.00512 0.91863 1.21407 0.99595 0.94944 0.98850 1.21436 0.99632 0.95366 0.98073 1.21275 1.00791 1.00489 0.91984 1.20012 0.99591 0.93772 0.96402 1.20860 1.02644 1.00551 0.93472 0.95694 0.93676 0.92934 0.93149 0.93536 0.92717 0.76406 0.88155 0.87107 0.92693 0.92013 0.92907 0.85199 0.84164 0.84029 0.84567 0.91275 0.92066 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.54 71.98 0.61 -4.84 16 2 C -0.11 -5.46 5.50 30.59 0.17 -5.30 16 3 C 0.28 14.10 2.10 44.24 0.09 14.20 16 4 H 0.00 0.07 7.54 -2.39 -0.02 0.05 16 5 C -0.55 -29.03 8.67 25.60 0.22 -28.81 16 6 H 0.07 3.49 7.73 -2.91 -0.02 3.47 16 7 C 0.02 0.87 5.18 84.66 0.44 1.30 16 8 N -0.92 -53.30 12.05 21.45 0.26 -53.04 16 9 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 N -0.71 -28.57 5.03 -446.10 -2.24 -30.81 16 14 C 0.50 18.68 6.17 87.66 0.54 19.22 16 15 O -0.58 -26.09 11.11 -3.02 -0.03 -26.12 16 16 C -0.12 -3.24 4.87 29.85 0.15 -3.09 16 17 C -0.03 -0.89 1.97 -11.54 -0.02 -0.91 16 18 H 0.07 2.20 5.48 -2.38 -0.01 2.19 16 19 C -0.14 -3.86 8.78 71.98 0.63 -3.23 16 20 C -0.08 -1.94 4.78 -19.87 -0.10 -2.03 16 21 C -0.12 -2.36 8.77 22.27 0.20 -2.17 16 22 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.31 9.68 22.27 0.22 -2.09 16 25 C -0.10 -2.12 5.88 -19.87 -0.12 -2.23 16 26 C -0.12 -2.40 9.16 71.24 0.65 -1.75 16 27 H 0.02 1.19 7.91 -2.39 -0.02 1.17 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.20 5.62 -2.39 -0.01 2.18 16 30 H 0.05 2.73 6.68 -2.39 -0.02 2.72 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.40 13.69 8.53 -92.71 -0.79 12.90 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.11 2.42 7.39 -2.38 -0.02 2.40 16 36 H 0.05 1.85 5.95 -2.39 -0.01 1.84 16 37 H 0.06 1.46 7.60 -2.39 -0.02 1.44 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 2.25 7.17 -2.91 -0.02 2.23 16 40 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.38 6.52 -2.39 -0.02 1.37 16 45 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 Total: -1.00 -65.61 354.53 4.32 -61.29 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.18 Total: 29.96 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.13 Total: -25.56 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.99 Total: -83.85 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.03 Total: -26.12 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -65.61 4.32 -61.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.373 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds