Wall clock time and date at job start Tue Mar 31 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47472 * 2 1 4 4 H 1.09005 * 109.46715 * 55.73434 * 3 2 1 5 5 C 1.50696 * 109.47154 * 175.73489 * 3 2 1 6 6 H 1.08004 * 119.99841 * 114.08474 * 5 3 2 7 7 C 1.37877 * 120.00351 * 294.08147 * 5 3 2 8 8 N 1.31507 * 120.00473 * 156.92549 * 7 5 3 9 9 Si 1.86808 * 119.99751 * 336.92624 * 7 5 3 10 10 H 1.48499 * 109.47145 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47070 * 300.00213 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99962 * 9 7 5 13 13 N 1.46495 * 109.46901 * 295.73767 * 3 2 1 14 14 C 1.34776 * 120.00518 * 84.99503 * 13 3 2 15 15 O 1.21286 * 119.99569 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00154 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46816 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.47539 * 55.00514 * 17 16 14 19 19 C 1.53003 * 109.47543 * 295.00231 * 17 16 14 20 20 C 1.50704 * 109.47273 * 175.00243 * 17 16 14 21 21 C 1.38259 * 119.99791 * 54.30870 * 20 17 16 22 22 C 1.38214 * 119.99564 * 180.02562 * 21 20 17 23 23 C 1.38256 * 120.00380 * 359.97438 * 22 21 20 24 24 C 1.38212 * 119.99988 * 359.97438 * 23 22 21 25 25 C 1.38218 * 120.00094 * 234.04264 * 20 17 16 26 26 C 1.50697 * 119.99902 * 359.97438 * 25 20 17 27 27 H 1.08998 * 109.47117 * 60.00074 * 1 2 3 28 28 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47129 * 300.00391 * 1 2 3 30 30 H 1.09000 * 109.47129 * 239.99609 * 2 1 3 31 31 H 1.09006 * 109.46806 * 119.99993 * 2 1 3 32 32 H 0.96998 * 119.99970 * 354.82347 * 8 7 5 33 33 H 0.97007 * 120.00102 * 265.00105 * 13 3 2 34 34 H 1.08999 * 109.47354 * 300.00133 * 16 14 13 35 35 H 1.08996 * 109.47260 * 60.00562 * 16 14 13 36 36 H 1.09004 * 109.46751 * 299.99956 * 19 17 16 37 37 H 1.08997 * 109.46727 * 59.99357 * 19 17 16 38 38 H 1.08993 * 109.47288 * 180.02562 * 19 17 16 39 39 H 1.07991 * 119.99916 * 359.97438 * 21 20 17 40 40 H 1.07998 * 119.99666 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.00145 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00180 * 179.97438 * 24 23 22 43 43 H 1.08990 * 109.47658 * 84.55732 * 26 25 20 44 44 H 1.09002 * 109.46950 * 204.56357 * 26 25 20 45 45 H 1.09009 * 109.46898 * 324.55427 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9779 0.8494 5 6 3.5433 1.4437 0.1057 6 1 4.1422 1.8046 -0.7175 7 6 4.1542 0.9842 1.2532 8 7 5.3968 0.5558 1.2103 9 14 3.2167 0.9703 2.8689 10 1 4.0899 0.4334 3.9433 11 1 2.8021 2.3543 3.2126 12 1 2.0125 0.1117 2.7351 13 7 1.6374 2.1028 -1.2442 14 6 0.4188 2.6701 -1.3422 15 8 -0.3443 2.6344 -0.4002 16 6 0.0049 3.3498 -2.6219 17 6 -1.4123 3.9059 -2.4686 18 1 -1.4542 4.5586 -1.5967 19 6 -2.3973 2.7492 -2.2877 20 6 -1.7801 4.6907 -3.7016 21 6 -1.6833 4.1031 -4.9493 22 6 -2.0201 4.8230 -6.0801 23 6 -2.4543 6.1305 -5.9634 24 6 -2.5520 6.7174 -4.7160 25 6 -2.2194 5.9959 -3.5845 26 6 -2.3311 6.6341 -2.2239 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8588 0.4922 0.3598 33 1 2.2478 2.1316 -1.9976 34 1 0.6937 4.1662 -2.8390 35 1 0.0263 2.6293 -3.4394 36 1 -2.3555 2.0966 -3.1597 37 1 -2.1313 2.1817 -1.3960 38 1 -3.4069 3.1454 -2.1790 39 1 -1.3437 3.0820 -5.0405 40 1 -1.9441 4.3642 -7.0548 41 1 -2.7171 6.6931 -6.8471 42 1 -2.8908 7.7389 -4.6248 43 1 -1.3618 7.0371 -1.9308 44 1 -3.0640 7.4402 -2.2598 45 1 -2.6487 5.8865 -1.4969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183795199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:28 Heat of formation + Delta-G solvation = -40.695071 kcal Electronic energy + Delta-G solvation = -23282.434064 eV Core-core repulsion = 20070.658005 eV Total energy + Delta-G solvation = -3211.776058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10434 -39.02721 -35.71238 -34.55818 -32.82307 -32.44221 -31.48875 -29.87693 -27.98592 -26.94259 -26.68417 -23.73627 -22.38796 -21.69535 -20.70050 -19.64853 -19.41723 -17.77374 -16.85485 -15.96274 -15.86415 -15.22609 -14.94695 -14.84339 -14.05828 -14.02099 -13.50770 -13.40991 -13.19388 -13.07319 -12.73996 -12.54293 -12.47139 -12.38344 -12.19364 -12.03853 -11.75648 -11.53291 -11.32334 -11.03830 -10.81746 -10.68894 -10.67063 -10.46599 -10.42500 -9.86336 -9.71333 -9.13924 -9.02480 -8.86383 -8.62592 -8.30068 -8.03631 -6.59463 -4.20654 1.26510 1.29486 3.30620 3.40660 3.45461 3.61011 3.64653 4.03632 4.44073 4.67632 4.72561 4.85804 4.89998 5.07453 5.10452 5.20214 5.21175 5.36783 5.43652 5.54021 5.60262 5.67489 5.72603 5.74054 5.86364 5.97144 6.07305 6.08002 6.10347 6.14296 6.23171 6.29100 6.40038 6.42413 6.53612 6.66795 6.72381 6.80670 6.93309 6.98952 7.06509 7.38122 7.46413 7.69651 8.24724 8.52970 8.71943 9.03989 9.45510 10.78559 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.003529 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.882197 B = 7933.440809 C = 7957.825051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.625 4.625 6 H 0.061 0.939 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.032 2.968 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.549 6.549 16 C -0.135 4.135 17 C -0.040 4.040 18 H 0.092 0.908 19 C -0.147 4.147 20 C -0.071 4.071 21 C -0.112 4.112 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.082 4.082 26 C -0.120 4.120 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.270 0.730 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 8.691 -12.578 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.146 3.854 4 H 0.058 0.942 5 C -0.662 4.662 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.523 5.523 9 Si 0.859 3.141 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.287 3.713 15 O -0.429 6.429 16 C -0.175 4.175 17 C -0.058 4.058 18 H 0.110 0.890 19 C -0.204 4.204 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.082 4.082 26 C -0.177 4.177 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.603 8.318 -10.262 20.444 hybrid contribution 0.304 0.360 -2.303 2.351 sum -15.299 8.678 -12.565 21.616 Atomic orbital electron populations 1.21894 0.97412 0.98767 1.01965 1.22252 0.93731 0.99842 1.01365 1.18987 0.95378 0.88317 0.82736 0.94199 1.22039 0.89779 1.49304 1.05081 0.92040 1.25624 0.96446 0.91861 1.02254 1.70863 1.12802 1.38695 1.29948 0.84201 0.75904 0.77637 0.76330 1.20910 1.20696 1.19834 1.46290 1.15034 1.55784 1.17997 1.20418 0.82401 0.79136 0.89308 1.90616 1.52000 1.60337 1.39944 1.21756 0.97532 1.01065 0.97190 1.19953 0.93617 0.97003 0.95243 0.89003 1.21948 0.97925 0.97496 1.03018 1.19854 0.98590 0.93704 0.94957 1.21021 1.00061 0.99903 0.91978 1.21098 1.00141 0.94776 0.98391 1.21078 1.00584 0.95459 0.97264 1.21005 1.01132 0.99569 0.92205 1.19821 0.98967 0.93732 0.95668 1.20875 1.02365 1.00646 0.93769 0.93237 0.95242 0.92950 0.93251 0.91895 0.91962 0.77588 0.89464 0.89539 0.93465 0.89691 0.93243 0.86100 0.86350 0.86433 0.86337 0.90989 0.91806 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.50 37.16 0.32 -2.53 16 2 C -0.13 -2.95 5.35 -26.73 -0.14 -3.10 16 3 C 0.25 5.88 1.85 -69.09 -0.13 5.75 16 4 H 0.04 1.03 6.14 -51.93 -0.32 0.71 16 5 C -0.62 -16.77 8.95 -34.44 -0.31 -17.08 16 6 H 0.06 1.73 7.96 -52.48 -0.42 1.31 16 7 C 0.05 1.28 5.22 -17.82 -0.09 1.19 16 8 N -0.89 -26.35 13.69 55.43 0.76 -25.59 16 9 Si 1.03 25.01 26.46 -169.99 -4.50 20.51 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.24 6.10 56.52 0.34 -5.89 16 13 N -0.70 -13.82 5.01 -54.94 -0.28 -14.10 16 14 C 0.50 9.00 6.08 -10.99 -0.07 8.93 16 15 O -0.55 -11.25 11.10 5.55 0.06 -11.19 16 16 C -0.14 -1.83 4.83 -27.89 -0.13 -1.96 16 17 C -0.04 -0.51 1.94 -91.77 -0.18 -0.69 16 18 H 0.09 1.28 5.53 -51.93 -0.29 0.99 16 19 C -0.15 -1.93 8.80 37.16 0.33 -1.60 16 20 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 21 C -0.11 -1.21 8.79 -39.58 -0.35 -1.56 16 22 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.21 9.68 -39.58 -0.38 -1.60 16 25 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 26 C -0.12 -1.19 9.15 36.00 0.33 -0.86 16 27 H 0.05 0.95 5.66 -51.93 -0.29 0.66 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.09 7.80 -51.93 -0.41 0.69 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.47 5.47 -51.93 -0.28 1.19 16 32 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 33 H 0.39 6.95 8.53 -40.82 -0.35 6.60 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.02 7.29 -51.93 -0.38 0.64 16 36 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 37 H 0.08 1.32 5.95 -51.93 -0.31 1.01 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.12 1.19 7.18 -52.49 -0.38 0.81 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 45 H 0.07 0.78 6.53 -51.92 -0.34 0.44 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -30.11 349.93 -8.57 -38.68 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.17 Total: 7.60 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.72 Total: -21.20 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.48 Total: -39.68 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.06 Total: -11.19 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.50 Total: 20.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.11 -8.57 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183795199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.014 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds