Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47472 * 2 1 4 4 H 1.09005 * 109.46715 * 55.73434 * 3 2 1 5 5 C 1.50696 * 109.47154 * 175.73489 * 3 2 1 6 6 H 1.08004 * 119.99841 * 114.08474 * 5 3 2 7 7 C 1.37877 * 120.00351 * 294.08147 * 5 3 2 8 8 N 1.31507 * 120.00473 * 156.92549 * 7 5 3 9 9 Si 1.86808 * 119.99751 * 336.92624 * 7 5 3 10 10 H 1.48499 * 109.47145 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47070 * 300.00213 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99962 * 9 7 5 13 13 N 1.46495 * 109.46901 * 295.73767 * 3 2 1 14 14 C 1.34776 * 120.00518 * 84.99503 * 13 3 2 15 15 O 1.21286 * 119.99569 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00154 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46816 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.47539 * 55.00514 * 17 16 14 19 19 C 1.53003 * 109.47543 * 295.00231 * 17 16 14 20 20 C 1.50704 * 109.47273 * 175.00243 * 17 16 14 21 21 C 1.38259 * 119.99791 * 54.30870 * 20 17 16 22 22 C 1.38214 * 119.99564 * 180.02562 * 21 20 17 23 23 C 1.38256 * 120.00380 * 359.97438 * 22 21 20 24 24 C 1.38212 * 119.99988 * 359.97438 * 23 22 21 25 25 C 1.38218 * 120.00094 * 234.04264 * 20 17 16 26 26 C 1.50697 * 119.99902 * 359.97438 * 25 20 17 27 27 H 1.08998 * 109.47117 * 60.00074 * 1 2 3 28 28 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47129 * 300.00391 * 1 2 3 30 30 H 1.09000 * 109.47129 * 239.99609 * 2 1 3 31 31 H 1.09006 * 109.46806 * 119.99993 * 2 1 3 32 32 H 0.96998 * 119.99970 * 354.82347 * 8 7 5 33 33 H 0.97007 * 120.00102 * 265.00105 * 13 3 2 34 34 H 1.08999 * 109.47354 * 300.00133 * 16 14 13 35 35 H 1.08996 * 109.47260 * 60.00562 * 16 14 13 36 36 H 1.09004 * 109.46751 * 299.99956 * 19 17 16 37 37 H 1.08997 * 109.46727 * 59.99357 * 19 17 16 38 38 H 1.08993 * 109.47288 * 180.02562 * 19 17 16 39 39 H 1.07991 * 119.99916 * 359.97438 * 21 20 17 40 40 H 1.07998 * 119.99666 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.00145 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00180 * 179.97438 * 24 23 22 43 43 H 1.08990 * 109.47658 * 84.55732 * 26 25 20 44 44 H 1.09002 * 109.46950 * 204.56357 * 26 25 20 45 45 H 1.09009 * 109.46898 * 324.55427 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9779 0.8494 5 6 3.5433 1.4437 0.1057 6 1 4.1422 1.8046 -0.7175 7 6 4.1542 0.9842 1.2532 8 7 5.3968 0.5558 1.2103 9 14 3.2167 0.9703 2.8689 10 1 4.0899 0.4334 3.9433 11 1 2.8021 2.3543 3.2126 12 1 2.0125 0.1117 2.7351 13 7 1.6374 2.1028 -1.2442 14 6 0.4188 2.6701 -1.3422 15 8 -0.3443 2.6344 -0.4002 16 6 0.0049 3.3498 -2.6219 17 6 -1.4123 3.9059 -2.4686 18 1 -1.4542 4.5586 -1.5967 19 6 -2.3973 2.7492 -2.2877 20 6 -1.7801 4.6907 -3.7016 21 6 -1.6833 4.1031 -4.9493 22 6 -2.0201 4.8230 -6.0801 23 6 -2.4543 6.1305 -5.9634 24 6 -2.5520 6.7174 -4.7160 25 6 -2.2194 5.9959 -3.5845 26 6 -2.3311 6.6341 -2.2239 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8588 0.4922 0.3598 33 1 2.2478 2.1316 -1.9976 34 1 0.6937 4.1662 -2.8390 35 1 0.0263 2.6293 -3.4394 36 1 -2.3555 2.0966 -3.1597 37 1 -2.1313 2.1817 -1.3960 38 1 -3.4069 3.1454 -2.1790 39 1 -1.3437 3.0820 -5.0405 40 1 -1.9441 4.3642 -7.0548 41 1 -2.7171 6.6931 -6.8471 42 1 -2.8908 7.7389 -4.6248 43 1 -1.3618 7.0371 -1.9308 44 1 -3.0640 7.4402 -2.2598 45 1 -2.6487 5.8865 -1.4969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183795199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = -57.328968 kcal Electronic energy + Delta-G solvation = -23283.155364 eV Core-core repulsion = 20070.658005 eV Total energy + Delta-G solvation = -3212.497358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20009 -40.23814 -37.26632 -35.77573 -34.45253 -33.60697 -33.14172 -30.77670 -29.47948 -28.22709 -27.69891 -24.76284 -24.17047 -22.72496 -21.98557 -21.16212 -20.65897 -19.69286 -18.04632 -17.28760 -16.97067 -16.47362 -16.38623 -15.70317 -15.52600 -15.01014 -14.98671 -14.61849 -14.52940 -14.45411 -14.11437 -13.93161 -13.83851 -13.53638 -13.42381 -13.15553 -12.86899 -12.67859 -12.62363 -12.45248 -12.27390 -12.14831 -12.08501 -11.76496 -11.57599 -11.50937 -11.39120 -11.15765 -10.51550 -10.44842 -9.71496 -9.64382 -9.42191 -8.80022 -6.41608 0.48820 0.53638 1.45945 1.48402 1.69262 1.87356 2.42199 2.56666 2.90177 2.95245 3.73233 3.81094 4.07501 4.09160 4.16905 4.25524 4.31197 4.33641 4.42420 4.48766 4.51890 4.60738 4.63236 4.70502 4.79183 4.84819 4.87411 4.88173 4.96741 5.07194 5.11369 5.21042 5.24474 5.30044 5.33144 5.34527 5.44800 5.57066 5.65960 5.67955 5.73125 5.75550 5.84373 6.03155 6.18813 6.55138 6.94067 7.28721 7.54656 8.56723 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.003529 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.882197 B = 7933.440809 C = 7957.825051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.255 3.745 4 H 0.021 0.979 5 C -0.622 4.622 6 H 0.040 0.960 7 C 0.003 3.997 8 N -0.921 5.921 9 Si 1.065 2.935 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.252 1.252 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.573 6.573 16 C -0.124 4.124 17 C -0.033 4.033 18 H 0.077 0.923 19 C -0.141 4.141 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.097 4.097 26 C -0.119 4.119 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.260 0.740 33 H 0.401 0.599 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.162 9.291 -14.192 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.169 4.169 3 C 0.150 3.850 4 H 0.038 0.962 5 C -0.660 4.660 6 H 0.058 0.942 7 C -0.199 4.199 8 N -0.555 5.555 9 Si 0.887 3.113 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.177 1.177 13 N -0.357 5.357 14 C 0.289 3.711 15 O -0.454 6.454 16 C -0.163 4.163 17 C -0.052 4.052 18 H 0.095 0.905 19 C -0.198 4.198 20 C -0.085 4.085 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.097 4.097 26 C -0.175 4.175 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.235 0.765 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.518 8.930 -11.909 22.988 hybrid contribution 0.878 0.246 -1.906 2.112 sum -16.640 9.176 -13.814 23.493 Atomic orbital electron populations 1.21765 0.95353 1.00205 1.01586 1.22139 0.95460 0.98447 1.00822 1.18667 0.92983 0.89419 0.83976 0.96153 1.22232 0.91693 1.47915 1.04114 0.94207 1.26701 0.96532 0.91496 1.05209 1.70954 1.13952 1.41222 1.29406 0.83762 0.75736 0.78356 0.73403 1.20737 1.20032 1.17686 1.46166 1.16157 1.56296 1.17048 1.21130 0.81228 0.78259 0.90495 1.90613 1.52507 1.60965 1.41327 1.21734 0.98096 1.01457 0.95052 1.19832 0.93032 0.96752 0.95592 0.90519 1.21864 0.98238 0.97509 1.02230 1.19759 1.00051 0.94062 0.94642 1.21188 1.00249 1.00482 0.91941 1.21403 0.99490 0.94989 0.99018 1.21433 0.99584 0.95582 0.97953 1.21280 1.00789 1.00435 0.92076 1.20023 0.99362 0.93847 0.96487 1.20865 1.02672 1.00798 0.93185 0.92778 0.92846 0.94172 0.92998 0.93249 0.93037 0.76534 0.88334 0.87220 0.92232 0.92266 0.92791 0.85270 0.84287 0.84096 0.84554 0.91269 0.90184 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.50 71.98 0.61 -4.42 16 2 C -0.13 -5.65 5.35 30.59 0.16 -5.48 16 3 C 0.25 11.94 1.85 44.25 0.08 12.02 16 4 H 0.02 1.06 6.14 -2.38 -0.01 1.04 16 5 C -0.62 -33.81 8.95 25.60 0.23 -33.58 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.27 16 7 C 0.00 0.15 5.22 84.66 0.44 0.59 16 8 N -0.92 -55.52 13.69 21.45 0.29 -55.23 16 9 Si 1.06 50.56 26.46 68.60 1.82 52.38 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.25 -11.08 6.10 99.48 0.61 -10.47 16 13 N -0.71 -27.36 5.01 -446.11 -2.24 -29.60 16 14 C 0.50 17.50 6.08 87.66 0.53 18.03 16 15 O -0.57 -23.24 11.10 -3.05 -0.03 -23.27 16 16 C -0.12 -3.13 4.83 29.85 0.14 -2.98 16 17 C -0.03 -0.82 1.94 -11.54 -0.02 -0.84 16 18 H 0.08 2.12 5.53 -2.39 -0.01 2.11 16 19 C -0.14 -3.54 8.80 71.98 0.63 -2.91 16 20 C -0.09 -1.86 4.78 -19.86 -0.10 -1.95 16 21 C -0.12 -2.32 8.79 22.27 0.20 -2.13 16 22 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.24 9.68 22.27 0.22 -2.03 16 25 C -0.10 -2.01 5.88 -19.87 -0.12 -2.13 16 26 C -0.12 -2.23 9.15 71.23 0.65 -1.58 16 27 H 0.05 2.00 5.66 -2.39 -0.01 1.98 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.62 7.80 -2.39 -0.02 1.60 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.26 5.47 -2.38 -0.01 2.25 16 32 H 0.26 15.68 8.73 -92.71 -0.81 14.87 16 33 H 0.40 13.93 8.53 -92.70 -0.79 13.14 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.11 2.29 7.29 -2.39 -0.02 2.28 16 36 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16 37 H 0.06 1.80 5.95 -2.39 -0.01 1.79 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.13 2.18 7.18 -2.92 -0.02 2.15 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 45 H 0.06 1.31 6.53 -2.38 -0.02 1.30 16 Total: -1.00 -64.91 349.93 4.01 -60.90 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.05 Total: 27.97 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 4.12 Total: -33.15 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.94 Total: -84.83 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.03 Total: -23.27 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.82 Total: 52.38 kcal Total: -64.91 4.01 -60.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183795199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.573 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds