Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47369 * 2 1 4 4 H 1.09001 * 109.47136 * 55.00321 * 3 2 1 5 5 C 1.50702 * 109.47340 * 175.00181 * 3 2 1 6 6 H 1.07991 * 120.00303 * 120.00064 * 5 3 2 7 7 C 1.37882 * 119.99544 * 300.00265 * 5 3 2 8 8 N 1.31511 * 120.00077 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99667 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47112 * 119.99620 * 9 7 5 12 12 H 1.48492 * 109.47137 * 239.99755 * 9 7 5 13 13 N 1.46505 * 109.47232 * 295.00057 * 3 2 1 14 14 C 1.34770 * 119.99651 * 84.99986 * 13 3 2 15 15 O 1.21283 * 120.00696 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99854 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46950 * 299.99735 * 16 14 13 18 18 C 1.52999 * 109.46916 * 59.99747 * 16 14 13 19 19 C 1.52999 * 109.47154 * 179.97438 * 16 14 13 20 20 C 1.50700 * 109.46924 * 175.00101 * 19 16 14 21 21 C 1.38234 * 120.00260 * 90.00031 * 20 19 16 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.50693 * 120.00207 * 179.72405 * 23 22 21 25 25 C 1.38239 * 119.99756 * 359.45918 * 23 22 21 26 26 C 1.38234 * 119.99992 * 0.53603 * 25 23 22 27 27 H 1.09000 * 109.47074 * 59.99904 * 1 2 3 28 28 H 1.08998 * 109.47567 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46894 * 300.00076 * 1 2 3 30 30 H 1.08999 * 109.46894 * 239.99924 * 2 1 3 31 31 H 1.09000 * 109.47074 * 120.00095 * 2 1 3 32 32 H 0.97002 * 119.99647 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99912 * 264.99492 * 13 3 2 34 34 H 1.09007 * 109.46978 * 60.00539 * 18 16 14 35 35 H 1.08999 * 109.47294 * 180.02562 * 18 16 14 36 36 H 1.09000 * 109.47548 * 300.00033 * 18 16 14 37 37 H 1.08999 * 109.47332 * 54.99949 * 19 16 14 38 38 H 1.08999 * 109.47492 * 294.99887 * 19 16 14 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47363 * 89.99511 * 24 23 22 42 42 H 1.09000 * 109.47097 * 209.99342 * 24 23 22 43 43 H 1.09001 * 109.47081 * 329.99847 * 24 23 22 44 44 H 1.08000 * 119.99962 * 180.30225 * 25 23 22 45 45 H 1.08002 * 120.00264 * 179.76377 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3373 2.1732 9 14 6.0050 0.8798 1.3811 10 1 6.5989 1.5440 0.1930 11 1 6.4000 1.6154 2.6091 12 1 6.4961 -0.5192 1.4626 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6328 -0.4340 16 6 0.0363 3.3377 -2.6548 17 1 0.7277 4.1530 -2.8678 18 6 0.0798 2.3205 -3.7968 19 6 -1.3829 3.8936 -2.5214 20 6 -1.7361 4.6722 -3.7624 21 6 -2.3352 4.0335 -4.8319 22 6 -2.6597 4.7477 -5.9701 23 6 -2.3801 6.0996 -6.0409 24 6 -2.7282 6.8770 -7.2840 25 6 -1.7862 6.7396 -4.9691 26 6 -1.4618 6.0254 -3.8309 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0606 2.9502 33 1 2.2720 2.1232 -1.9977 34 1 -0.6117 1.5052 -3.5837 35 1 -0.2083 2.8076 -4.7284 36 1 1.0907 1.9241 -3.8920 37 1 -1.4357 4.5504 -1.6531 38 1 -2.0856 3.0698 -2.3970 39 1 -2.5498 2.9764 -4.7783 40 1 -3.1274 4.2485 -6.8059 41 1 -3.7382 7.2764 -7.1919 42 1 -2.0226 7.6985 -7.4083 43 1 -2.6756 6.2185 -8.1510 44 1 -1.5722 7.7968 -5.0225 45 1 -0.9943 6.5245 -2.9950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183810628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -44.961483 kcal Electronic energy + Delta-G solvation = -22885.002742 eV Core-core repulsion = 19673.041678 eV Total energy + Delta-G solvation = -3211.961064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86491 -38.94521 -35.54935 -34.65024 -32.59689 -31.99005 -31.00201 -30.68094 -28.32418 -26.85769 -25.48827 -23.45710 -22.78212 -22.38173 -20.74618 -19.71345 -19.11370 -17.12685 -16.26904 -15.64083 -15.51268 -15.32676 -15.00533 -14.70445 -14.43964 -13.95416 -13.69089 -13.45104 -13.23180 -12.90511 -12.66259 -12.52106 -12.45257 -11.99659 -11.92732 -11.81785 -11.46095 -11.25658 -11.13228 -10.98162 -10.95569 -10.86812 -10.82427 -10.70073 -10.28683 -10.13943 -9.60448 -9.02334 -8.98730 -8.85223 -8.50539 -8.45464 -7.76443 -6.11269 -4.20385 1.26613 1.34341 3.23761 3.31780 3.34330 3.48398 3.65559 4.15128 4.39501 4.71454 4.72534 4.94315 4.99510 5.04697 5.10986 5.19937 5.26447 5.35503 5.37737 5.43576 5.58478 5.60955 5.74265 5.85099 5.91069 5.94674 6.05281 6.10577 6.30827 6.34575 6.39005 6.41243 6.48728 6.50248 6.67774 6.68937 6.96583 7.06617 7.22581 7.40074 7.51106 7.64473 7.76520 7.93072 8.20616 8.72897 8.80726 9.20393 9.47551 10.94057 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.003119 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.576705 B = 8974.174402 C = 9411.530292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.551 6.551 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.144 4.144 19 C -0.061 4.061 20 C -0.076 4.076 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.113 4.113 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 8.852 -16.598 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.201 4.201 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.138 4.138 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.198 8.714 -15.719 20.664 hybrid contribution 1.373 -0.062 -0.215 1.391 sum -8.825 8.652 -15.934 20.165 Atomic orbital electron populations 1.21835 0.98374 0.97926 1.01258 1.21920 0.92601 0.99875 1.02165 1.18767 0.94105 0.89169 0.81195 0.93401 1.21284 0.90829 1.38785 1.06203 0.92114 1.24891 0.98548 0.94865 0.95427 1.69908 1.34984 1.37763 1.09329 0.86419 0.84986 0.77753 0.78097 1.19758 1.20907 1.20900 1.46488 1.14721 1.55963 1.18363 1.20304 0.82686 0.79271 0.88787 1.90659 1.51510 1.60079 1.40720 1.21280 0.97754 0.99019 0.94778 0.89211 1.21829 1.02518 0.98459 0.97327 1.20400 0.95486 0.99530 0.94473 1.19987 0.97742 0.93979 0.95925 1.21089 0.98900 0.99820 0.93133 1.20997 1.00910 0.93773 0.98231 1.19878 0.99518 0.94333 0.96091 1.20764 1.01643 0.99637 0.94872 1.20999 0.99816 0.99587 0.93386 1.21100 0.99993 0.93919 0.98122 0.94201 0.95979 0.93207 0.95131 0.88397 0.92659 0.78065 0.92251 0.91764 0.92090 0.90115 0.90402 0.86011 0.86374 0.91442 0.91729 0.91737 0.86352 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.50 4.91 -54.93 -0.27 -14.77 16 14 C 0.50 9.73 5.72 -10.99 -0.06 9.67 16 15 O -0.55 -12.54 13.06 5.55 0.07 -12.47 16 16 C -0.11 -1.53 2.72 -91.77 -0.25 -1.78 16 17 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -1.78 8.66 37.16 0.32 -1.46 16 19 C -0.06 -0.83 4.19 -27.88 -0.12 -0.95 16 20 C -0.08 -0.91 4.71 -104.62 -0.49 -1.40 16 21 C -0.11 -1.21 7.96 -39.58 -0.32 -1.53 16 22 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 23 C -0.10 -0.95 5.88 -104.63 -0.62 -1.57 16 24 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 25 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 26 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 27 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 7.00 7.96 -40.82 -0.32 6.67 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 0.70 6.27 -51.93 -0.33 0.38 16 36 H 0.06 0.74 7.57 -51.93 -0.39 0.34 16 37 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 38 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 39 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -29.83 359.24 -9.34 -39.17 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.46 Total: 7.55 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.70 Total: -16.35 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.36 Total: -38.92 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.83 -9.34 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.791 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds