Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47369 * 2 1 4 4 H 1.09001 * 109.47136 * 55.00321 * 3 2 1 5 5 C 1.50702 * 109.47340 * 175.00181 * 3 2 1 6 6 H 1.07991 * 120.00303 * 120.00064 * 5 3 2 7 7 C 1.37882 * 119.99544 * 300.00265 * 5 3 2 8 8 N 1.31511 * 120.00077 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99667 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47112 * 119.99620 * 9 7 5 12 12 H 1.48492 * 109.47137 * 239.99755 * 9 7 5 13 13 N 1.46505 * 109.47232 * 295.00057 * 3 2 1 14 14 C 1.34770 * 119.99651 * 84.99986 * 13 3 2 15 15 O 1.21283 * 120.00696 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99854 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46950 * 299.99735 * 16 14 13 18 18 C 1.52999 * 109.46916 * 59.99747 * 16 14 13 19 19 C 1.52999 * 109.47154 * 179.97438 * 16 14 13 20 20 C 1.50700 * 109.46924 * 175.00101 * 19 16 14 21 21 C 1.38234 * 120.00260 * 90.00031 * 20 19 16 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.50693 * 120.00207 * 179.72405 * 23 22 21 25 25 C 1.38239 * 119.99756 * 359.45918 * 23 22 21 26 26 C 1.38234 * 119.99992 * 0.53603 * 25 23 22 27 27 H 1.09000 * 109.47074 * 59.99904 * 1 2 3 28 28 H 1.08998 * 109.47567 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46894 * 300.00076 * 1 2 3 30 30 H 1.08999 * 109.46894 * 239.99924 * 2 1 3 31 31 H 1.09000 * 109.47074 * 120.00095 * 2 1 3 32 32 H 0.97002 * 119.99647 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99912 * 264.99492 * 13 3 2 34 34 H 1.09007 * 109.46978 * 60.00539 * 18 16 14 35 35 H 1.08999 * 109.47294 * 180.02562 * 18 16 14 36 36 H 1.09000 * 109.47548 * 300.00033 * 18 16 14 37 37 H 1.08999 * 109.47332 * 54.99949 * 19 16 14 38 38 H 1.08999 * 109.47492 * 294.99887 * 19 16 14 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47363 * 89.99511 * 24 23 22 42 42 H 1.09000 * 109.47097 * 209.99342 * 24 23 22 43 43 H 1.09001 * 109.47081 * 329.99847 * 24 23 22 44 44 H 1.08000 * 119.99962 * 180.30225 * 25 23 22 45 45 H 1.08002 * 120.00264 * 179.76377 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3373 2.1732 9 14 6.0050 0.8798 1.3811 10 1 6.5989 1.5440 0.1930 11 1 6.4000 1.6154 2.6091 12 1 6.4961 -0.5192 1.4626 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6328 -0.4340 16 6 0.0363 3.3377 -2.6548 17 1 0.7277 4.1530 -2.8678 18 6 0.0798 2.3205 -3.7968 19 6 -1.3829 3.8936 -2.5214 20 6 -1.7361 4.6722 -3.7624 21 6 -2.3352 4.0335 -4.8319 22 6 -2.6597 4.7477 -5.9701 23 6 -2.3801 6.0996 -6.0409 24 6 -2.7282 6.8770 -7.2840 25 6 -1.7862 6.7396 -4.9691 26 6 -1.4618 6.0254 -3.8309 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0606 2.9502 33 1 2.2720 2.1232 -1.9977 34 1 -0.6117 1.5052 -3.5837 35 1 -0.2083 2.8076 -4.7284 36 1 1.0907 1.9241 -3.8920 37 1 -1.4357 4.5504 -1.6531 38 1 -2.0856 3.0698 -2.3970 39 1 -2.5498 2.9764 -4.7783 40 1 -3.1274 4.2485 -6.8059 41 1 -3.7382 7.2764 -7.1919 42 1 -2.0226 7.6985 -7.4083 43 1 -2.6756 6.2185 -8.1510 44 1 -1.5722 7.7968 -5.0225 45 1 -0.9943 6.5245 -2.9950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183810628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = -60.492063 kcal Electronic energy + Delta-G solvation = -22885.676198 eV Core-core repulsion = 19673.041678 eV Total energy + Delta-G solvation = -3212.634520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08787 -40.14734 -37.14369 -36.03048 -34.31844 -33.30126 -32.34717 -31.76645 -29.37740 -28.64973 -26.41755 -25.19139 -23.95840 -23.45302 -21.88596 -21.29957 -20.71018 -18.80425 -17.70143 -17.19567 -16.61758 -16.56516 -16.18995 -16.10872 -15.83603 -15.13147 -14.75774 -14.60935 -14.52378 -14.23838 -13.96181 -13.67921 -13.39308 -13.37256 -13.21137 -13.08963 -12.87203 -12.85188 -12.74913 -12.68594 -12.15893 -12.09107 -12.02139 -11.93552 -11.80439 -11.68438 -11.57130 -11.02734 -10.59448 -10.41743 -9.75595 -9.58135 -9.31268 -8.16007 -6.33172 0.45810 0.55620 1.43270 1.44574 1.56250 1.92127 2.36554 2.66340 2.91917 3.13385 3.79805 3.89927 3.97556 4.10560 4.13238 4.21839 4.28414 4.46711 4.49165 4.53785 4.58270 4.66738 4.77303 4.79729 4.87527 4.89415 4.92229 4.96145 5.03934 5.08451 5.20529 5.25252 5.28157 5.31676 5.36688 5.45417 5.57306 5.58151 5.66192 5.76388 5.80798 5.81497 5.95217 6.18419 6.19242 6.75982 7.04561 7.34522 7.64251 8.89462 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.003119 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.576705 B = 8974.174402 C = 9411.530292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.589 6.589 16 C -0.093 4.093 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.053 4.053 20 C -0.090 4.090 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.126 4.126 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.136 0.864 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 9.477 -19.562 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.471 6.471 16 C -0.115 4.115 17 H 0.122 0.878 18 C -0.195 4.195 19 C -0.091 4.091 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.100 4.100 24 C -0.168 4.168 25 C -0.145 4.145 26 C -0.144 4.144 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.154 0.846 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.789 9.352 -18.725 23.107 hybrid contribution 1.170 -0.197 0.699 1.377 sum -8.619 9.155 -18.026 21.978 Atomic orbital electron populations 1.21671 0.96978 0.99046 1.00292 1.21765 0.93753 0.99194 1.01171 1.18346 0.93530 0.89180 0.81565 0.98617 1.21619 0.91542 1.38698 1.06594 0.91164 1.25774 1.03268 0.94441 0.95068 1.70060 1.36959 1.38504 1.09874 0.85337 0.79231 0.77820 0.78184 1.18441 1.21071 1.20446 1.46273 1.15692 1.56068 1.17346 1.21191 0.81577 0.78347 0.90053 1.90644 1.52480 1.61298 1.42635 1.21233 0.98410 0.99444 0.92389 0.87751 1.21807 1.02873 0.97768 0.97035 1.20251 0.94787 0.99027 0.95013 1.19813 0.99483 0.94208 0.95497 1.21221 0.98738 1.00377 0.93166 1.21286 1.00570 0.94042 0.98437 1.20263 0.98365 0.94577 0.96817 1.20818 1.02315 0.99827 0.93867 1.21252 0.99634 1.00511 0.93081 1.21222 1.00449 0.93886 0.98828 0.93527 0.93686 0.95749 0.94077 0.91197 0.92651 0.76384 0.92674 0.89742 0.91494 0.92019 0.91388 0.85280 0.84262 0.90558 0.90884 0.90648 0.84640 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.96 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.31 2.24 44.24 0.10 14.40 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -29.03 8.73 25.60 0.22 -28.81 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.75 11.29 21.45 0.24 -52.51 16 9 Si 0.97 42.27 29.54 68.60 2.03 44.29 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.71 -29.05 4.91 -446.09 -2.19 -31.24 16 14 C 0.50 19.56 5.72 87.66 0.50 20.06 16 15 O -0.59 -27.89 13.06 -3.04 -0.04 -27.93 16 16 C -0.09 -2.61 2.72 -11.54 -0.03 -2.64 16 17 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.14 -3.14 8.66 71.98 0.62 -2.52 16 19 C -0.05 -1.45 4.19 29.85 0.12 -1.32 16 20 C -0.09 -2.06 4.71 -19.86 -0.09 -2.15 16 21 C -0.12 -2.33 7.96 22.27 0.18 -2.16 16 22 C -0.13 -2.15 9.70 22.27 0.22 -1.94 16 23 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16 24 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 25 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 26 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 27 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.90 5.95 -2.39 -0.01 3.88 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.40 14.15 7.96 -92.71 -0.74 13.41 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 35 H 0.08 1.62 6.27 -2.39 -0.01 1.61 16 36 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 37 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 38 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 39 H 0.13 2.31 8.04 -2.91 -0.02 2.29 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 43 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -65.98 359.24 4.36 -61.62 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.22 Total: 29.26 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 4.10 Total: -23.49 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.95 Total: -83.75 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.98 4.36 -61.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.125 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds