Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 H 1.08999 * 109.46802 * 304.99860 * 3 2 1 5 5 C 1.50703 * 109.46963 * 185.00034 * 3 2 1 6 6 H 1.07995 * 120.00009 * 240.00155 * 5 3 2 7 7 C 1.37878 * 119.99689 * 59.99881 * 5 3 2 8 8 N 1.31508 * 120.00541 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99577 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47356 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46982 * 119.99902 * 9 7 5 12 12 H 1.48494 * 109.47058 * 239.99930 * 9 7 5 13 13 N 1.46493 * 109.47099 * 65.00232 * 3 2 1 14 14 C 1.34784 * 119.99864 * 274.99655 * 13 3 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 3 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 3 17 17 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 18 18 C 1.53000 * 109.47174 * 60.00061 * 16 14 13 19 19 C 1.53001 * 109.47168 * 179.97438 * 16 14 13 20 20 C 1.50699 * 109.47405 * 174.99864 * 19 16 14 21 21 C 1.38235 * 120.00109 * 269.72852 * 20 19 16 22 22 C 1.38233 * 119.99914 * 179.78791 * 21 20 19 23 23 C 1.38238 * 120.00100 * 0.45858 * 22 21 20 24 24 C 1.50694 * 120.00011 * 179.79173 * 23 22 21 25 25 C 1.38232 * 119.99581 * 359.77297 * 23 22 21 26 26 C 1.38233 * 119.99826 * 89.99870 * 20 19 16 27 27 H 1.09000 * 109.46886 * 300.00028 * 1 2 3 28 28 H 1.09002 * 109.46841 * 60.00075 * 1 2 3 29 29 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46886 * 239.99972 * 2 1 3 31 31 H 1.09002 * 109.46841 * 119.99925 * 2 1 3 32 32 H 0.96996 * 120.00555 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00740 * 94.72347 * 13 3 2 34 34 H 1.08998 * 109.47223 * 179.97438 * 18 16 14 35 35 H 1.08995 * 109.47095 * 299.99934 * 18 16 14 36 36 H 1.09000 * 109.47156 * 60.00213 * 18 16 14 37 37 H 1.09003 * 109.46878 * 295.00230 * 19 16 14 38 38 H 1.09001 * 109.47216 * 54.99856 * 19 16 14 39 39 H 1.07997 * 119.99811 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00268 * 180.25678 * 22 21 20 41 41 H 1.09003 * 109.47159 * 269.97873 * 24 23 22 42 42 H 1.08998 * 109.47248 * 29.98337 * 24 23 22 43 43 H 1.09000 * 109.47423 * 149.98308 * 24 23 22 44 44 H 1.08003 * 119.99713 * 179.97438 * 25 23 22 45 45 H 1.07998 * 120.00218 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5450 -0.1937 11 1 6.4962 -0.5192 -1.4626 12 1 6.4001 1.6154 -2.6091 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3374 2.6367 0.4325 16 6 0.0343 3.3328 2.6567 17 1 0.0634 2.6049 3.4675 18 6 1.0047 4.4756 2.9620 19 6 -1.3840 3.8908 2.5225 20 6 -1.8314 4.4501 3.8484 21 6 -2.4904 3.6393 4.7536 22 6 -2.8969 4.1512 5.9716 23 6 -2.6528 5.4763 6.2807 24 6 -3.1001 6.0355 7.6066 25 6 -1.9980 6.2882 5.3735 26 6 -1.5877 5.7752 4.1572 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0611 -2.9499 33 1 2.2705 2.1196 1.9992 34 1 0.7144 4.9593 3.8947 35 1 2.0152 4.0784 3.0575 36 1 0.9754 5.2035 2.1513 37 1 -1.3937 4.6818 1.7726 38 1 -2.0611 3.0929 2.2176 39 1 -2.6843 2.6051 4.5107 40 1 -3.4081 3.5167 6.6805 41 1 -4.1102 6.4338 7.5108 42 1 -3.0910 5.2443 8.3563 43 1 -2.4226 6.8329 7.9118 44 1 -1.8076 7.3236 5.6148 45 1 -1.0763 6.4097 3.4485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183810643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -44.983693 kcal Electronic energy + Delta-G solvation = -22865.451721 eV Core-core repulsion = 19653.489694 eV Total energy + Delta-G solvation = -3211.962027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86236 -38.94171 -35.56006 -34.64474 -32.60031 -32.00140 -31.00094 -30.66514 -28.29086 -26.89674 -25.47843 -23.47367 -22.77626 -22.35948 -20.74605 -19.71656 -19.11913 -17.15775 -16.22222 -15.62694 -15.50717 -15.36752 -14.96747 -14.74174 -14.44401 -13.93580 -13.60168 -13.50344 -13.30250 -12.90639 -12.65991 -12.56401 -12.33417 -12.09854 -11.90442 -11.74600 -11.45688 -11.25911 -11.11123 -10.99185 -10.96304 -10.87535 -10.82975 -10.70358 -10.28867 -10.13777 -9.60948 -9.02647 -8.98857 -8.85265 -8.50539 -8.45624 -7.76334 -6.11170 -4.20281 1.26568 1.34264 3.23759 3.31770 3.34265 3.48362 3.65520 4.15327 4.39360 4.71383 4.72460 4.94273 4.99469 5.04856 5.11451 5.20118 5.26939 5.35618 5.38159 5.43648 5.58645 5.60886 5.74559 5.85275 5.92019 5.95968 6.05511 6.10953 6.33064 6.34591 6.39009 6.41029 6.47723 6.50177 6.67722 6.68343 6.96509 7.05977 7.22282 7.39668 7.51067 7.64396 7.76364 7.93080 8.20497 8.72874 8.80782 9.20388 9.47639 10.94176 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.003122 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.668045 B = 8965.205056 C = 9466.955123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.551 6.551 16 C -0.106 4.106 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.061 4.061 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.022 0.978 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 8.829 16.599 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.128 4.128 17 H 0.107 0.893 18 C -0.202 4.202 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.139 4.139 26 C -0.129 4.129 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.211 8.698 15.716 20.662 hybrid contribution 1.346 -0.125 0.240 1.373 sum -8.866 8.573 15.955 20.166 Atomic orbital electron populations 1.21833 0.98383 0.97953 1.01214 1.21933 0.92597 0.99918 1.02189 1.18765 0.94121 0.89134 0.81216 0.93374 1.21279 0.90815 1.38770 1.06181 0.92114 1.24890 0.98536 0.94877 0.95428 1.69902 1.34988 1.37757 1.09351 0.86422 0.85003 0.77752 0.78095 1.19760 1.20900 1.20915 1.46488 1.14810 1.55944 1.18294 1.20307 0.82681 0.79085 0.88973 1.90658 1.51605 1.60088 1.40616 1.21276 0.95865 0.98427 0.97225 0.89298 1.21830 0.98637 0.97765 1.01938 1.20403 0.95152 1.01306 0.93041 1.19985 0.97492 0.93829 0.96319 1.21091 0.98570 0.99785 0.93713 1.20996 1.00806 0.94954 0.97039 1.19877 0.99278 0.94157 0.96511 1.20764 1.01293 1.01032 0.93825 1.21000 0.99397 0.99394 0.94108 1.21096 0.99833 0.95134 0.96857 0.94298 0.93173 0.95936 0.88365 0.95126 0.92656 0.78069 0.91801 0.92020 0.92182 0.90364 0.90152 0.86033 0.86363 0.91437 0.91737 0.91735 0.86364 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.41 7.57 -51.93 -0.39 1.01 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.51 4.91 -54.93 -0.27 -14.78 16 14 C 0.50 9.73 5.71 -10.98 -0.06 9.67 16 15 O -0.55 -12.55 13.08 5.56 0.07 -12.48 16 16 C -0.11 -1.53 2.72 -91.77 -0.25 -1.78 16 17 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 18 C -0.14 -1.82 8.66 37.16 0.32 -1.50 16 19 C -0.06 -0.84 4.19 -27.88 -0.12 -0.95 16 20 C -0.08 -0.91 4.71 -104.63 -0.49 -1.40 16 21 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 22 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 23 C -0.10 -0.95 5.88 -104.63 -0.62 -1.57 16 24 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 25 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 26 C -0.11 -1.22 7.96 -39.58 -0.32 -1.53 16 27 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 7.00 7.96 -40.82 -0.32 6.67 16 34 H 0.06 0.71 6.26 -51.93 -0.33 0.38 16 35 H 0.06 0.77 7.56 -51.93 -0.39 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.12 1.22 8.04 -52.49 -0.42 0.80 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -29.81 359.26 -9.34 -39.15 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.46 Total: 7.60 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.70 Total: -16.37 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.36 Total: -38.91 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.81 -9.34 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.832 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds