Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 H 1.08999 * 109.46802 * 304.99860 * 3 2 1 5 5 C 1.50703 * 109.46963 * 185.00034 * 3 2 1 6 6 H 1.07995 * 120.00009 * 240.00155 * 5 3 2 7 7 C 1.37878 * 119.99689 * 59.99881 * 5 3 2 8 8 N 1.31508 * 120.00541 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99577 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47356 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46982 * 119.99902 * 9 7 5 12 12 H 1.48494 * 109.47058 * 239.99930 * 9 7 5 13 13 N 1.46493 * 109.47099 * 65.00232 * 3 2 1 14 14 C 1.34784 * 119.99864 * 274.99655 * 13 3 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 3 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 3 17 17 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 18 18 C 1.53000 * 109.47174 * 60.00061 * 16 14 13 19 19 C 1.53001 * 109.47168 * 179.97438 * 16 14 13 20 20 C 1.50699 * 109.47405 * 174.99864 * 19 16 14 21 21 C 1.38235 * 120.00109 * 269.72852 * 20 19 16 22 22 C 1.38233 * 119.99914 * 179.78791 * 21 20 19 23 23 C 1.38238 * 120.00100 * 0.45858 * 22 21 20 24 24 C 1.50694 * 120.00011 * 179.79173 * 23 22 21 25 25 C 1.38232 * 119.99581 * 359.77297 * 23 22 21 26 26 C 1.38233 * 119.99826 * 89.99870 * 20 19 16 27 27 H 1.09000 * 109.46886 * 300.00028 * 1 2 3 28 28 H 1.09002 * 109.46841 * 60.00075 * 1 2 3 29 29 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46886 * 239.99972 * 2 1 3 31 31 H 1.09002 * 109.46841 * 119.99925 * 2 1 3 32 32 H 0.96996 * 120.00555 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00740 * 94.72347 * 13 3 2 34 34 H 1.08998 * 109.47223 * 179.97438 * 18 16 14 35 35 H 1.08995 * 109.47095 * 299.99934 * 18 16 14 36 36 H 1.09000 * 109.47156 * 60.00213 * 18 16 14 37 37 H 1.09003 * 109.46878 * 295.00230 * 19 16 14 38 38 H 1.09001 * 109.47216 * 54.99856 * 19 16 14 39 39 H 1.07997 * 119.99811 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.00268 * 180.25678 * 22 21 20 41 41 H 1.09003 * 109.47159 * 269.97873 * 24 23 22 42 42 H 1.08998 * 109.47248 * 29.98337 * 24 23 22 43 43 H 1.09000 * 109.47423 * 149.98308 * 24 23 22 44 44 H 1.08003 * 119.99713 * 179.97438 * 25 23 22 45 45 H 1.07998 * 120.00218 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8798 -1.3811 10 1 6.5989 1.5450 -0.1937 11 1 6.4962 -0.5192 -1.4626 12 1 6.4001 1.6154 -2.6091 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3374 2.6367 0.4325 16 6 0.0343 3.3328 2.6567 17 1 0.0634 2.6049 3.4675 18 6 1.0047 4.4756 2.9620 19 6 -1.3840 3.8908 2.5225 20 6 -1.8314 4.4501 3.8484 21 6 -2.4904 3.6393 4.7536 22 6 -2.8969 4.1512 5.9716 23 6 -2.6528 5.4763 6.2807 24 6 -3.1001 6.0355 7.6066 25 6 -1.9980 6.2882 5.3735 26 6 -1.5877 5.7752 4.1572 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0611 -2.9499 33 1 2.2705 2.1196 1.9992 34 1 0.7144 4.9593 3.8947 35 1 2.0152 4.0784 3.0575 36 1 0.9754 5.2035 2.1513 37 1 -1.3937 4.6818 1.7726 38 1 -2.0611 3.0929 2.2176 39 1 -2.6843 2.6051 4.5107 40 1 -3.4081 3.5167 6.6805 41 1 -4.1102 6.4338 7.5108 42 1 -3.0910 5.2443 8.3563 43 1 -2.4226 6.8329 7.9118 44 1 -1.8076 7.3236 5.6148 45 1 -1.0763 6.4097 3.4485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183810643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -60.485655 kcal Electronic energy + Delta-G solvation = -22866.123936 eV Core-core repulsion = 19653.489694 eV Total energy + Delta-G solvation = -3212.634242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08282 -40.14667 -37.15302 -36.03016 -34.31574 -33.32963 -32.31455 -31.76687 -29.34382 -28.69566 -26.42350 -25.20312 -23.93491 -23.45298 -21.88952 -21.29953 -20.71442 -18.84156 -17.61325 -17.22523 -16.69769 -16.52682 -16.22681 -16.01981 -15.83547 -15.15922 -14.84402 -14.58494 -14.46488 -14.22252 -14.02453 -13.66519 -13.38302 -13.37086 -13.21565 -13.06981 -12.88720 -12.85052 -12.73174 -12.69579 -12.14166 -12.09165 -12.04734 -11.96115 -11.78713 -11.68919 -11.57536 -11.03038 -10.59179 -10.42314 -9.75522 -9.57880 -9.31251 -8.15713 -6.32813 0.45910 0.55736 1.43394 1.44732 1.56370 1.91931 2.36829 2.66289 2.92000 3.13715 3.79805 3.89705 3.97438 4.10824 4.12982 4.21979 4.28304 4.46808 4.49268 4.52288 4.57516 4.66725 4.76229 4.79952 4.87399 4.89300 4.91797 4.96113 5.03490 5.08185 5.20751 5.24669 5.27623 5.31052 5.36694 5.44809 5.57102 5.58253 5.66320 5.76514 5.80763 5.81246 5.95322 6.18322 6.19275 6.76282 7.04509 7.34804 7.64285 8.89787 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.003122 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.668045 B = 8965.205056 C = 9466.955123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.589 6.589 16 C -0.093 4.093 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.053 4.053 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.118 4.118 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 9.652 19.486 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.471 6.471 16 C -0.114 4.114 17 H 0.126 0.874 18 C -0.196 4.196 19 C -0.091 4.091 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.100 4.100 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.156 0.844 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.727 9.536 18.646 23.092 hybrid contribution 1.110 -0.342 -0.642 1.327 sum -8.617 9.194 18.004 21.975 Atomic orbital electron populations 1.21670 0.96990 0.99081 1.00245 1.21784 0.93753 0.99284 1.01194 1.18343 0.93567 0.89112 0.81592 0.98558 1.21612 0.91507 1.38656 1.06562 0.91131 1.25772 1.03254 0.94465 0.95077 1.70053 1.36962 1.38513 1.09899 0.85340 0.79255 0.77804 0.78194 1.18409 1.20482 1.21081 1.46274 1.15799 1.56027 1.17283 1.21193 0.81570 0.78145 0.90259 1.90644 1.52577 1.61265 1.42571 1.21229 0.96706 0.99057 0.94409 0.87421 1.21807 0.98298 0.96841 1.02622 1.20253 0.94374 1.00361 0.94103 1.19808 0.99087 0.94565 0.95536 1.21223 0.98765 1.00031 0.94223 1.21258 1.00665 0.95607 0.96882 1.20263 0.98266 0.93990 0.97503 1.20818 1.01912 1.01608 0.92492 1.21278 0.98998 1.00487 0.93626 1.21217 1.00074 0.94765 0.97574 0.93680 0.95662 0.93635 0.91133 0.94111 0.92658 0.76384 0.89679 0.91551 0.93013 0.91662 0.91751 0.85791 0.84538 0.90561 0.90819 0.90714 0.84368 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.52 71.98 0.61 -4.97 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.30 2.24 44.25 0.10 14.40 16 4 H 0.00 -0.21 7.57 -2.39 -0.02 -0.23 16 5 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.74 11.29 21.45 0.24 -52.50 16 9 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.71 -29.04 4.91 -446.10 -2.19 -31.23 16 14 C 0.50 19.55 5.71 87.65 0.50 20.05 16 15 O -0.59 -27.89 13.08 -3.04 -0.04 -27.93 16 16 C -0.09 -2.59 2.72 -11.54 -0.03 -2.62 16 17 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.14 -3.28 8.66 71.98 0.62 -2.66 16 19 C -0.05 -1.45 4.19 29.85 0.13 -1.32 16 20 C -0.09 -2.05 4.71 -19.87 -0.09 -2.15 16 21 C -0.12 -2.62 9.70 22.27 0.22 -2.41 16 22 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 23 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16 24 C -0.11 -1.21 10.01 71.23 0.71 -0.49 16 25 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 26 C -0.12 -2.40 7.96 22.27 0.18 -2.22 16 27 H 0.04 1.97 5.65 -2.39 -0.01 1.95 16 28 H 0.02 1.23 7.85 -2.39 -0.02 1.22 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.40 14.14 7.96 -92.71 -0.74 13.40 16 34 H 0.08 1.69 6.26 -2.39 -0.01 1.67 16 35 H 0.07 1.51 7.56 -2.39 -0.02 1.50 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.91 8.09 -2.39 -0.02 1.90 16 38 H 0.06 1.93 7.90 -2.39 -0.02 1.92 16 39 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.67 8.09 -2.39 -0.02 0.66 16 43 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 44 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.13 2.37 8.04 -2.91 -0.02 2.34 16 Total: -1.00 -65.87 359.26 4.36 -61.51 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.22 Total: 29.44 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.10 Total: -23.54 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.95 Total: -83.73 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.87 4.36 -61.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.026 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds