Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47069 * 305.00732 * 3 2 1 5 5 C 1.50697 * 109.47402 * 184.99888 * 3 2 1 6 6 H 1.07994 * 120.00249 * 240.00354 * 5 3 2 7 7 C 1.37882 * 119.99720 * 60.00193 * 5 3 2 8 8 N 1.31512 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47127 * 90.00327 * 9 7 5 11 11 H 1.48496 * 109.47168 * 210.00062 * 9 7 5 12 12 H 1.48502 * 109.47406 * 330.00183 * 9 7 5 13 13 N 1.46503 * 109.46623 * 65.00264 * 3 2 1 14 14 C 1.34783 * 119.99655 * 274.99756 * 13 3 2 15 15 O 1.21276 * 119.99977 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99626 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47040 * 59.99935 * 16 14 13 18 18 C 1.52998 * 109.47299 * 300.00072 * 16 14 13 19 19 C 1.52999 * 109.46887 * 180.02562 * 16 14 13 20 20 C 1.50700 * 109.46924 * 185.00098 * 19 16 14 21 21 C 1.38234 * 120.00260 * 90.00031 * 20 19 16 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.50693 * 120.00207 * 179.72405 * 23 22 21 25 25 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 23 22 27 27 H 1.08996 * 109.47150 * 299.99422 * 1 2 3 28 28 H 1.08996 * 109.47482 * 59.99887 * 1 2 3 29 29 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47196 * 240.00828 * 2 1 3 31 31 H 1.08996 * 109.47482 * 120.00113 * 2 1 3 32 32 H 0.97003 * 120.00720 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00057 * 95.00465 * 13 3 2 34 34 H 1.08998 * 109.47300 * 300.00235 * 18 16 14 35 35 H 1.09002 * 109.47282 * 59.99919 * 18 16 14 36 36 H 1.08997 * 109.47593 * 179.97438 * 18 16 14 37 37 H 1.08999 * 109.47332 * 64.99947 * 19 16 14 38 38 H 1.08999 * 109.47492 * 304.99884 * 19 16 14 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47363 * 89.99511 * 24 23 22 42 42 H 1.09000 * 109.47097 * 209.99342 * 24 23 22 43 43 H 1.09001 * 109.47081 * 329.99847 * 24 23 22 44 44 H 1.07999 * 119.99934 * 180.25938 * 25 23 22 45 45 H 1.08001 * 120.00294 * 179.76453 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8786 -1.2280 8 7 3.4062 0.3377 -2.1734 9 14 6.0048 0.8816 -1.3819 10 1 6.5549 -0.3498 -0.7604 11 1 6.3828 0.9228 -2.8173 12 1 6.5569 2.0742 -0.6902 13 7 1.6524 2.0974 1.2519 14 6 0.4350 2.6643 1.3670 15 8 -0.3397 2.6318 0.4345 16 6 0.0365 3.3384 2.6546 17 1 0.7279 4.1540 2.8669 18 6 0.0806 2.3221 3.7974 19 6 -1.3828 3.8940 2.5213 20 6 -1.7357 4.6734 3.7619 21 6 -1.4608 6.0265 3.8298 22 6 -1.7849 6.7415 4.9675 23 6 -2.3790 6.1024 6.0396 24 6 -2.7267 6.8806 7.2824 25 6 -2.6588 4.7504 5.9698 26 6 -2.3351 4.0355 4.8318 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8292 -0.0607 -2.9500 33 1 2.2719 2.1231 1.9978 34 1 -0.6108 1.5065 3.5851 35 1 1.0915 1.9258 3.8925 36 1 -0.2072 2.8097 4.7287 37 1 -2.0855 3.0700 2.3978 38 1 -1.4361 4.5502 1.6526 39 1 -0.9927 6.5249 2.9938 40 1 -1.5697 7.7985 5.0206 41 1 -3.7383 7.2765 7.1920 42 1 -2.6700 6.2236 8.1502 43 1 -2.0236 7.7046 7.4037 44 1 -3.1268 4.2520 6.8058 45 1 -2.5502 2.9785 4.7787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183810673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -44.918183 kcal Electronic energy + Delta-G solvation = -22884.834002 eV Core-core repulsion = 19672.874816 eV Total energy + Delta-G solvation = -3211.959186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86490 -38.94528 -35.54870 -34.65030 -32.59644 -31.98947 -31.00189 -30.67967 -28.32411 -26.85616 -25.48821 -23.45587 -22.78190 -22.38132 -20.74597 -19.71281 -19.11320 -17.12663 -16.26808 -15.64053 -15.51153 -15.32427 -15.00504 -14.70387 -14.44255 -13.95492 -13.69122 -13.45102 -13.23284 -12.90347 -12.65978 -12.52078 -12.45205 -11.99655 -11.92703 -11.81710 -11.45832 -11.24781 -11.13306 -10.99812 -10.95740 -10.87649 -10.80271 -10.70028 -10.29484 -10.13567 -9.60728 -9.02844 -8.98713 -8.85099 -8.50428 -8.45415 -7.76325 -6.10973 -4.20240 1.26621 1.34349 3.24522 3.31613 3.33669 3.48420 3.65566 4.15147 4.39616 4.71462 4.72543 4.94325 4.99526 5.04696 5.10990 5.20056 5.26453 5.35513 5.37748 5.43587 5.58486 5.60961 5.74270 5.85117 5.91066 5.94672 6.05290 6.10589 6.30847 6.34580 6.39009 6.41323 6.48825 6.50258 6.67787 6.69024 6.96591 7.06720 7.22629 7.40100 7.51195 7.64373 7.76607 7.93166 8.20715 8.72878 8.80660 9.20411 9.47619 10.94290 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.003120 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.924026 B = 8973.506549 C = 9411.508979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.550 6.550 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.144 4.144 19 C -0.061 4.061 20 C -0.076 4.076 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 8.852 16.583 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.201 4.201 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.139 4.139 26 C -0.129 4.129 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.195 8.716 15.696 20.647 hybrid contribution 1.378 -0.065 0.230 1.398 sum -8.818 8.651 15.926 20.155 Atomic orbital electron populations 1.21834 0.98375 0.97922 1.01259 1.21925 0.92599 0.99883 1.02162 1.18762 0.94079 0.89163 0.81189 0.93403 1.21246 0.90829 1.38898 1.06207 0.92168 1.24887 0.98541 0.94873 0.95402 1.69895 1.35078 1.37665 1.09353 0.86472 0.84989 0.78421 0.77358 1.20576 1.21095 1.19883 1.46491 1.14718 1.55979 1.18357 1.20305 0.82687 0.79275 0.88780 1.90657 1.51498 1.60078 1.40724 1.21280 0.97754 0.99020 0.94778 0.89210 1.21827 1.02518 0.98465 0.97320 1.20401 0.95485 0.99523 0.94481 1.19987 0.97740 0.93980 0.95925 1.21099 0.99992 0.93915 0.98130 1.20999 0.99814 0.99589 0.93386 1.19878 0.99522 0.94331 0.96089 1.20764 1.01645 0.99629 0.94878 1.20997 1.00913 0.93770 0.98232 1.21091 0.98902 0.99820 0.93129 0.94200 0.93206 0.95984 0.88400 0.95133 0.92598 0.78071 0.92252 0.92091 0.91765 0.90401 0.90115 0.85997 0.86351 0.91442 0.91735 0.91730 0.86373 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.51 4.91 -54.93 -0.27 -14.78 16 14 C 0.50 9.73 5.72 -10.98 -0.06 9.67 16 15 O -0.55 -12.54 13.06 5.56 0.07 -12.47 16 16 C -0.11 -1.53 2.72 -91.77 -0.25 -1.78 16 17 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -1.78 8.66 37.16 0.32 -1.46 16 19 C -0.06 -0.83 4.19 -27.88 -0.12 -0.95 16 20 C -0.08 -0.91 4.71 -104.62 -0.49 -1.40 16 21 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 22 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 23 C -0.10 -0.95 5.88 -104.63 -0.62 -1.57 16 24 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 25 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 26 C -0.11 -1.21 7.97 -39.58 -0.32 -1.53 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.99 7.96 -40.82 -0.32 6.67 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 36 H 0.06 0.70 6.27 -51.93 -0.33 0.38 16 37 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 38 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -29.82 359.24 -9.34 -39.16 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.46 Total: 7.57 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.70 Total: -16.35 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.36 Total: -38.93 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.82 -9.34 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds