Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47069 * 305.00732 * 3 2 1 5 5 C 1.50697 * 109.47402 * 184.99888 * 3 2 1 6 6 H 1.07994 * 120.00249 * 240.00354 * 5 3 2 7 7 C 1.37882 * 119.99720 * 60.00193 * 5 3 2 8 8 N 1.31512 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47127 * 90.00327 * 9 7 5 11 11 H 1.48496 * 109.47168 * 210.00062 * 9 7 5 12 12 H 1.48502 * 109.47406 * 330.00183 * 9 7 5 13 13 N 1.46503 * 109.46623 * 65.00264 * 3 2 1 14 14 C 1.34783 * 119.99655 * 274.99756 * 13 3 2 15 15 O 1.21276 * 119.99977 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99626 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47040 * 59.99935 * 16 14 13 18 18 C 1.52998 * 109.47299 * 300.00072 * 16 14 13 19 19 C 1.52999 * 109.46887 * 180.02562 * 16 14 13 20 20 C 1.50700 * 109.46924 * 185.00098 * 19 16 14 21 21 C 1.38234 * 120.00260 * 90.00031 * 20 19 16 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.50693 * 120.00207 * 179.72405 * 23 22 21 25 25 C 1.38238 * 119.99752 * 359.47832 * 23 22 21 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 23 22 27 27 H 1.08996 * 109.47150 * 299.99422 * 1 2 3 28 28 H 1.08996 * 109.47482 * 59.99887 * 1 2 3 29 29 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47196 * 240.00828 * 2 1 3 31 31 H 1.08996 * 109.47482 * 120.00113 * 2 1 3 32 32 H 0.97003 * 120.00720 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00057 * 95.00465 * 13 3 2 34 34 H 1.08998 * 109.47300 * 300.00235 * 18 16 14 35 35 H 1.09002 * 109.47282 * 59.99919 * 18 16 14 36 36 H 1.08997 * 109.47593 * 179.97438 * 18 16 14 37 37 H 1.08999 * 109.47332 * 64.99947 * 19 16 14 38 38 H 1.08999 * 109.47492 * 304.99884 * 19 16 14 39 39 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47363 * 89.99511 * 24 23 22 42 42 H 1.09000 * 109.47097 * 209.99342 * 24 23 22 43 43 H 1.09001 * 109.47081 * 329.99847 * 24 23 22 44 44 H 1.07999 * 119.99934 * 180.25938 * 25 23 22 45 45 H 1.08001 * 120.00294 * 179.76453 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8786 -1.2280 8 7 3.4062 0.3377 -2.1734 9 14 6.0048 0.8816 -1.3819 10 1 6.5549 -0.3498 -0.7604 11 1 6.3828 0.9228 -2.8173 12 1 6.5569 2.0742 -0.6902 13 7 1.6524 2.0974 1.2519 14 6 0.4350 2.6643 1.3670 15 8 -0.3397 2.6318 0.4345 16 6 0.0365 3.3384 2.6546 17 1 0.7279 4.1540 2.8669 18 6 0.0806 2.3221 3.7974 19 6 -1.3828 3.8940 2.5213 20 6 -1.7357 4.6734 3.7619 21 6 -1.4608 6.0265 3.8298 22 6 -1.7849 6.7415 4.9675 23 6 -2.3790 6.1024 6.0396 24 6 -2.7267 6.8806 7.2824 25 6 -2.6588 4.7504 5.9698 26 6 -2.3351 4.0355 4.8318 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8292 -0.0607 -2.9500 33 1 2.2719 2.1231 1.9978 34 1 -0.6108 1.5065 3.5851 35 1 1.0915 1.9258 3.8925 36 1 -0.2072 2.8097 4.7287 37 1 -2.0855 3.0700 2.3978 38 1 -1.4361 4.5502 1.6526 39 1 -0.9927 6.5249 2.9938 40 1 -1.5697 7.7985 5.0206 41 1 -3.7383 7.2765 7.1920 42 1 -2.6700 6.2236 8.1502 43 1 -2.0236 7.7046 7.4037 44 1 -3.1268 4.2520 6.8058 45 1 -2.5502 2.9785 4.7787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183810673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -60.440693 kcal Electronic energy + Delta-G solvation = -22885.507109 eV Core-core repulsion = 19672.874816 eV Total energy + Delta-G solvation = -3212.632293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08824 -40.14756 -37.14311 -36.03116 -34.31774 -33.30137 -32.34657 -31.76663 -29.37701 -28.64879 -26.41765 -25.18971 -23.95878 -23.45325 -21.88592 -21.29957 -20.71005 -18.80333 -17.70024 -17.19321 -16.61742 -16.56529 -16.19213 -16.11062 -15.83611 -15.13217 -14.75846 -14.60428 -14.52383 -14.23845 -13.96185 -13.67772 -13.39039 -13.37227 -13.20637 -13.08622 -12.89830 -12.85525 -12.74395 -12.65256 -12.17639 -12.09653 -12.02108 -11.93604 -11.80449 -11.68472 -11.57326 -11.03571 -10.58729 -10.41670 -9.75612 -9.58077 -9.31284 -8.15758 -6.33094 0.45796 0.55606 1.44169 1.44836 1.55209 1.92110 2.36660 2.66372 2.91908 3.13461 3.79802 3.89905 3.97532 4.10541 4.13233 4.21825 4.28401 4.46699 4.49200 4.53768 4.58282 4.66725 4.77312 4.79725 4.87519 4.89403 4.92219 4.96124 5.03929 5.08468 5.20514 5.25244 5.28145 5.31676 5.36675 5.45385 5.57232 5.58108 5.66120 5.76376 5.80801 5.81512 5.95332 6.18399 6.19226 6.75782 7.04578 7.34545 7.64266 8.89479 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029011 B = 0.003120 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.924026 B = 8973.506549 C = 9411.508979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.589 6.589 16 C -0.093 4.093 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.053 4.053 20 C -0.090 4.090 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.117 4.117 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.140 0.860 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 9.474 19.541 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.470 6.470 16 C -0.115 4.115 17 H 0.122 0.878 18 C -0.195 4.195 19 C -0.091 4.091 20 C -0.090 4.090 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.100 4.100 24 C -0.168 4.168 25 C -0.143 4.143 26 C -0.135 4.135 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.157 0.843 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.782 9.352 18.697 23.081 hybrid contribution 1.173 -0.200 -0.680 1.371 sum -8.608 9.152 18.017 21.965 Atomic orbital electron populations 1.21671 0.96975 0.99043 1.00295 1.21770 0.93754 0.99201 1.01165 1.18341 0.93508 0.89173 0.81561 0.98619 1.21590 0.91553 1.38819 1.06617 0.91170 1.25772 1.03273 0.94439 0.95035 1.70051 1.37033 1.38418 1.09882 0.85385 0.79207 0.78865 0.77121 1.19660 1.21303 1.18931 1.46277 1.15691 1.56084 1.17342 1.21193 0.81577 0.78352 0.90046 1.90642 1.52467 1.61298 1.42638 1.21232 0.98411 0.99442 0.92392 0.87753 1.21805 1.02875 0.97775 0.97025 1.20251 0.94786 0.99023 0.95019 1.19813 0.99481 0.94208 0.95498 1.21220 1.00448 0.93883 0.98834 1.21251 0.99633 1.00511 0.93082 1.20263 0.98368 0.94577 0.96814 1.20818 1.02318 0.99817 0.93875 1.21286 1.00571 0.94036 0.98439 1.21223 0.98739 1.00378 0.93161 0.93527 0.95744 0.93690 0.91192 0.94093 0.92640 0.76386 0.92674 0.91493 0.89742 0.91384 0.92021 0.86002 0.84641 0.90557 0.90646 0.90886 0.84262 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 3 C 0.28 14.33 2.24 44.25 0.10 14.43 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -29.12 8.73 25.60 0.22 -28.90 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -52.77 11.29 21.45 0.24 -52.53 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 N -0.71 -29.07 4.91 -446.08 -2.19 -31.26 16 14 C 0.50 19.56 5.72 87.66 0.50 20.07 16 15 O -0.59 -27.89 13.06 -3.02 -0.04 -27.93 16 16 C -0.09 -2.61 2.72 -11.54 -0.03 -2.65 16 17 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.14 -3.14 8.66 71.98 0.62 -2.52 16 19 C -0.05 -1.45 4.19 29.85 0.12 -1.32 16 20 C -0.09 -2.06 4.71 -19.86 -0.09 -2.15 16 21 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 22 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 23 C -0.10 -1.68 5.88 -19.87 -0.12 -1.79 16 24 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 25 C -0.13 -2.15 9.70 22.27 0.22 -1.94 16 26 C -0.12 -2.33 7.97 22.27 0.18 -2.16 16 27 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 28 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 3.90 5.95 -2.38 -0.01 3.88 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.40 14.15 7.96 -92.71 -0.74 13.41 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.46 7.56 -2.39 -0.02 1.44 16 36 H 0.08 1.62 6.27 -2.39 -0.01 1.61 16 37 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 38 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 39 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 44 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 45 H 0.13 2.31 8.04 -2.91 -0.02 2.29 16 Total: -1.00 -65.96 359.24 4.36 -61.60 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.22 Total: 29.36 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.10 Total: -23.53 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.95 Total: -83.79 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -65.96 4.36 -61.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183810673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.164 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds