Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53001 * 109.46606 * 2 1 4 4 H 1.09000 * 109.47219 * 55.00085 * 3 2 1 5 5 C 1.50702 * 109.46525 * 174.99996 * 3 2 1 6 6 H 1.08002 * 120.00116 * 119.99888 * 5 3 2 7 7 C 1.37878 * 120.00056 * 299.99459 * 5 3 2 8 8 N 1.31510 * 119.99903 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99769 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47668 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46876 * 120.00575 * 9 7 5 12 12 H 1.48498 * 109.47201 * 240.00164 * 9 7 5 13 13 N 1.46500 * 109.47175 * 294.99804 * 3 2 1 14 14 C 1.34777 * 120.00156 * 85.00394 * 13 3 2 15 15 O 1.21278 * 119.99565 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99952 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46844 * 295.55409 * 16 14 13 18 18 C 1.52998 * 109.47281 * 55.55536 * 16 14 13 19 19 C 1.50701 * 109.46665 * 175.55595 * 16 14 13 20 20 C 1.38233 * 119.99751 * 245.65357 * 19 16 14 21 21 C 1.38236 * 119.99987 * 179.74906 * 20 19 16 22 22 C 1.38241 * 119.99737 * 0.55006 * 21 20 19 23 23 C 1.50701 * 119.99787 * 179.72795 * 22 21 20 24 24 C 1.38233 * 120.00007 * 359.70450 * 22 21 20 25 25 C 1.38231 * 120.00115 * 65.93605 * 19 16 14 26 26 H 1.09004 * 109.46493 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47150 * 300.00134 * 1 2 3 28 28 H 1.08996 * 109.46823 * 60.00312 * 1 2 3 29 29 H 1.08990 * 109.47120 * 239.99891 * 2 1 3 30 30 H 1.08996 * 109.46823 * 119.99688 * 2 1 3 31 31 H 0.97000 * 120.00119 * 179.97438 * 8 7 5 32 32 H 0.97009 * 119.99976 * 265.00455 * 13 3 2 33 33 H 1.09003 * 109.47252 * 60.00548 * 17 16 14 34 34 H 1.09002 * 109.46794 * 180.02562 * 17 16 14 35 35 H 1.08994 * 109.47179 * 300.00107 * 17 16 14 36 36 H 1.08998 * 109.47017 * 59.99747 * 18 16 14 37 37 H 1.09002 * 109.47173 * 179.97438 * 18 16 14 38 38 H 1.08998 * 109.46899 * 299.99862 * 18 16 14 39 39 H 1.08005 * 120.00041 * 0.02562 * 20 19 16 40 40 H 1.07999 * 120.00001 * 180.28118 * 21 20 19 41 41 H 1.09006 * 109.46833 * 269.97536 * 23 22 21 42 42 H 1.08999 * 109.47296 * 29.97721 * 23 22 21 43 43 H 1.08993 * 109.47110 * 149.98282 * 23 22 21 44 44 H 1.08003 * 119.99967 * 179.97438 * 24 22 21 45 45 H 1.07999 * 120.00227 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5474 0.1948 11 1 6.3990 1.6169 2.6103 12 1 6.4971 -0.5173 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3392 2.6327 -0.4342 16 6 0.0362 3.3376 -2.6549 17 6 0.9380 4.5496 -2.8973 18 6 0.1862 2.3504 -3.8142 19 6 -1.3985 3.7893 -2.5621 20 6 -2.3571 3.2180 -3.3779 21 6 -3.6740 3.6286 -3.2892 22 6 -4.0304 4.6188 -2.3926 23 6 -5.4650 5.0708 -2.3002 24 6 -3.0708 5.1938 -1.5806 25 6 -1.7548 4.7791 -1.6654 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0616 2.9496 32 1 2.2720 2.1232 -1.9979 33 1 1.9757 4.2229 -2.9644 34 1 0.6492 5.0368 -3.8287 35 1 0.8312 5.2529 -2.0715 36 1 -0.4562 1.4869 -3.6414 37 1 -0.1028 2.8372 -4.7457 38 1 1.2239 2.0237 -3.8812 39 1 -2.0779 2.4475 -4.0814 40 1 -4.4238 3.1790 -3.9233 41 1 -5.6320 5.8939 -2.9950 42 1 -6.1245 4.2411 -2.5546 43 1 -5.6761 5.4044 -1.2843 44 1 -3.3491 5.9676 -0.8805 45 1 -1.0052 5.2285 -1.0310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183816649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -50.813125 kcal Electronic energy + Delta-G solvation = -23762.386020 eV Core-core repulsion = 20550.171210 eV Total energy + Delta-G solvation = -3212.214810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54960 -39.82079 -37.11588 -36.29723 -34.27421 -32.99140 -32.06946 -31.89276 -28.93015 -28.30040 -27.40478 -25.31293 -24.24447 -23.19958 -22.42494 -21.36067 -20.41700 -18.75435 -17.61419 -17.26649 -16.93587 -16.40024 -16.13361 -15.87464 -15.60377 -14.93224 -14.66936 -14.56467 -14.49694 -14.29813 -14.13139 -13.58437 -13.30874 -13.24546 -13.14702 -13.00306 -12.93101 -12.85870 -12.70181 -12.67330 -12.50982 -12.32071 -12.13108 -12.04221 -11.68496 -11.61589 -11.50413 -11.02640 -10.57642 -10.36537 -9.73630 -9.56189 -9.32565 -8.15550 -6.32844 0.46997 0.58492 1.43414 1.44778 1.56404 1.94175 2.36558 2.62571 3.02760 3.14111 3.58583 3.84600 4.01654 4.10921 4.17285 4.17637 4.22135 4.48028 4.56318 4.58245 4.59959 4.74021 4.75375 4.81468 4.86310 4.87202 4.90788 4.93513 5.01711 5.07180 5.20061 5.23080 5.25404 5.29260 5.34201 5.44438 5.57066 5.59559 5.66478 5.75300 5.78848 5.81518 5.95779 6.18406 6.20060 6.76349 7.06093 7.34976 7.65941 8.89856 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.003959 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.262186 B = 7071.146447 C = 7299.760092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.703 5.703 14 C 0.508 3.492 15 O -0.581 6.581 16 C -0.039 4.039 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.104 4.104 26 H 0.043 0.957 27 H 0.021 0.979 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.128 0.872 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 7.434 -15.174 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.351 5.351 14 C 0.294 3.706 15 O -0.462 6.462 16 C -0.042 4.042 17 C -0.190 4.190 18 C -0.196 4.196 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.147 4.147 22 C -0.099 4.099 23 C -0.166 4.166 24 C -0.155 4.155 25 C -0.123 4.123 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.146 0.854 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.045 7.312 -14.327 19.512 hybrid contribution 1.313 -0.140 0.758 1.523 sum -9.731 7.172 -13.569 18.173 Atomic orbital electron populations 1.21656 0.97170 0.98891 1.00104 1.21770 0.93517 0.99332 1.01208 1.18311 0.93516 0.89021 0.81474 0.98839 1.21615 0.91462 1.38674 1.06591 0.91039 1.25771 1.03242 0.94448 0.95064 1.70062 1.36960 1.38486 1.09911 0.85340 0.79250 0.77804 0.78196 1.18324 1.21162 1.20479 1.46220 1.15499 1.56133 1.17297 1.20947 0.81600 0.78297 0.89707 1.90660 1.52411 1.60780 1.42312 1.19754 0.93591 0.97536 0.93366 1.21853 0.98885 0.95336 1.02892 1.21960 1.03203 0.97805 0.96620 1.19451 0.94065 0.96691 0.97202 1.21375 0.92885 0.99897 0.99638 1.21296 0.96309 0.97729 0.99415 1.20261 0.97025 0.96571 0.96031 1.20804 0.90545 1.02232 1.02972 1.21184 0.92671 1.01276 1.00371 1.20955 0.96659 0.97325 0.97322 0.93779 0.95981 0.93747 0.93987 0.91168 0.92696 0.76444 0.90876 0.89176 0.93498 0.92491 0.88634 0.90840 0.83963 0.83755 0.89910 0.90543 0.91454 0.85377 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.52 71.99 0.61 -5.01 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.48 2.24 44.25 0.10 14.58 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -28.87 8.73 25.60 0.22 -28.64 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -52.83 11.29 21.45 0.24 -52.58 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.70 -28.97 4.84 -446.10 -2.16 -31.13 16 14 C 0.51 20.20 4.97 87.66 0.44 20.64 16 15 O -0.58 -28.27 12.47 -3.02 -0.04 -28.31 16 16 C -0.04 -1.13 0.72 -53.67 -0.04 -1.17 16 17 C -0.13 -3.24 8.17 71.98 0.59 -2.65 16 18 C -0.14 -3.07 7.01 71.98 0.50 -2.57 16 19 C -0.07 -2.19 4.33 -19.87 -0.09 -2.28 16 20 C -0.12 -3.04 8.99 22.27 0.20 -2.84 16 21 C -0.13 -2.96 9.70 22.27 0.22 -2.74 16 22 C -0.10 -2.32 5.88 -19.86 -0.12 -2.44 16 23 C -0.11 -1.77 10.01 71.24 0.71 -1.05 16 24 C -0.14 -3.74 9.70 22.27 0.22 -3.53 16 25 C -0.10 -3.30 8.15 22.27 0.18 -3.12 16 26 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 28 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.40 14.07 7.43 -92.70 -0.69 13.38 16 33 H 0.07 1.67 7.88 -2.39 -0.02 1.65 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.28 7.08 -2.39 -0.02 1.26 16 36 H 0.06 1.34 7.25 -2.39 -0.02 1.33 16 37 H 0.09 1.56 7.78 -2.39 -0.02 1.54 16 38 H 0.07 1.51 7.33 -2.39 -0.02 1.49 16 39 H 0.14 2.94 5.91 -2.91 -0.02 2.93 16 40 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 43 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 44 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.10 3.40 7.23 -2.91 -0.02 3.38 16 Total: -1.00 -68.14 353.11 4.72 -63.42 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.28 Total: 31.78 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.36 Total: -27.38 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.92 Total: -83.71 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.04 Total: -28.31 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.14 4.72 -63.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.609 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds