Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 H 1.09000 * 109.47453 * 305.00546 * 3 2 1 5 5 C 1.50699 * 109.47315 * 185.00153 * 3 2 1 6 6 H 1.07998 * 120.00378 * 240.00159 * 5 3 2 7 7 C 1.37878 * 119.99732 * 60.00791 * 5 3 2 8 8 N 1.31519 * 120.00078 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47288 * 89.99488 * 9 7 5 11 11 H 1.48494 * 109.46904 * 209.99439 * 9 7 5 12 12 H 1.48498 * 109.46954 * 329.99543 * 9 7 5 13 13 N 1.46504 * 109.46979 * 65.00500 * 3 2 1 14 14 C 1.34772 * 119.99935 * 275.27504 * 13 3 2 15 15 O 1.21282 * 120.00160 * 359.72570 * 14 13 3 16 16 C 1.50700 * 120.00089 * 179.72308 * 14 13 3 17 17 C 1.53002 * 109.47171 * 294.51309 * 16 14 13 18 18 C 1.52998 * 109.47286 * 54.51169 * 16 14 13 19 19 C 1.50703 * 109.47302 * 174.51389 * 16 14 13 20 20 C 1.38234 * 119.99914 * 294.11833 * 19 16 14 21 21 C 1.38236 * 120.00177 * 179.74137 * 20 19 16 22 22 C 1.38240 * 119.99457 * 0.55497 * 21 20 19 23 23 C 1.50702 * 119.99674 * 179.72097 * 22 21 20 24 24 C 1.38228 * 120.00173 * 359.69564 * 22 21 20 25 25 C 1.38231 * 120.00129 * 114.38943 * 19 16 14 26 26 H 1.08999 * 109.47384 * 59.99811 * 1 2 3 27 27 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46742 * 299.99556 * 1 2 3 29 29 H 1.09005 * 109.47230 * 240.00893 * 2 1 3 30 30 H 1.08990 * 109.47651 * 120.00718 * 2 1 3 31 31 H 0.97001 * 119.99524 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00069 * 94.99303 * 13 3 2 33 33 H 1.08999 * 109.46988 * 59.99740 * 17 16 14 34 34 H 1.08994 * 109.47454 * 180.02562 * 17 16 14 35 35 H 1.09008 * 109.47161 * 299.99965 * 17 16 14 36 36 H 1.09002 * 109.46628 * 60.00085 * 18 16 14 37 37 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 38 38 H 1.08999 * 109.47010 * 300.00344 * 18 16 14 39 39 H 1.08002 * 119.99751 * 359.97438 * 20 19 16 40 40 H 1.07993 * 120.00193 * 180.27190 * 21 20 19 41 41 H 1.08995 * 109.47563 * 269.97660 * 23 22 21 42 42 H 1.09003 * 109.47201 * 29.98101 * 23 22 21 43 43 H 1.09000 * 109.47072 * 149.97317 * 23 22 21 44 44 H 1.08004 * 120.00338 * 180.02562 * 24 22 21 45 45 H 1.08007 * 120.00495 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4061 0.3369 -2.1731 9 14 6.0049 0.8802 -1.3814 10 1 6.5539 -0.3518 -0.7602 11 1 6.3834 0.9217 -2.8167 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0974 1.2519 14 6 0.4332 2.6595 1.3690 15 8 -0.3415 2.6274 0.4364 16 6 0.0323 3.3277 2.6589 17 6 -0.0526 2.2803 3.7710 18 6 1.0746 4.3839 3.0316 19 6 -1.3118 3.9872 2.4864 20 6 -1.4514 5.0553 1.6200 21 6 -2.6854 5.6569 1.4577 22 6 -3.7772 5.1977 2.1705 23 6 -5.1211 5.8576 1.9983 24 6 -3.6364 4.1330 3.0408 25 6 -2.4037 3.5278 3.1987 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8292 -0.0614 -2.9498 32 1 2.2720 2.1230 1.9979 33 1 0.9194 1.8032 3.8958 34 1 -0.3431 2.7635 4.7038 35 1 -0.7953 1.5278 3.5055 36 1 1.1350 5.1300 2.2393 37 1 0.7843 4.8675 3.9643 38 1 2.0467 3.9068 3.1564 39 1 -0.5972 5.4173 1.0671 40 1 -2.7954 6.4885 0.7776 41 1 -5.2225 6.6691 2.7189 42 1 -5.2029 6.2570 0.9874 43 1 -5.9100 5.1239 2.1640 44 1 -4.4895 3.7740 3.5973 45 1 -2.2936 2.6963 3.8793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183816664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -34.195822 kcal Electronic energy + Delta-G solvation = -23750.971469 eV Core-core repulsion = 20539.477239 eV Total energy + Delta-G solvation = -3211.494230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24019 -38.50985 -35.58522 -34.73566 -32.44763 -31.56433 -30.92292 -30.50781 -27.31112 -26.99658 -26.44941 -23.59680 -22.72953 -22.15697 -21.08220 -19.61067 -18.88865 -17.16590 -16.21933 -15.64572 -15.34636 -15.15347 -14.71091 -14.35319 -14.23472 -13.70825 -13.59380 -13.38347 -13.23253 -12.82918 -12.67373 -12.27816 -12.11684 -11.98620 -11.80560 -11.72215 -11.56119 -11.43616 -11.24139 -11.19835 -10.98613 -10.80222 -10.66340 -10.48983 -10.29275 -10.13570 -9.60023 -9.02256 -8.83594 -8.68034 -8.48365 -8.27359 -7.75107 -6.10947 -4.20315 1.51581 1.62679 3.24278 3.31427 3.33287 3.48117 3.84242 4.24315 4.43872 4.68147 4.89139 4.99463 5.09427 5.14895 5.19485 5.20872 5.44962 5.48241 5.54251 5.60485 5.65493 5.78279 5.82669 5.83345 5.92559 5.97106 6.15711 6.24198 6.28042 6.29054 6.41985 6.49496 6.62619 6.69865 6.74296 6.85784 7.07218 7.19636 7.24039 7.40621 7.51500 7.64437 7.76941 7.93224 8.20806 8.72776 8.81019 9.20996 9.47636 10.94231 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003947 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.660487 B = 7093.113837 C = 7218.255883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.539 6.539 16 C -0.049 4.049 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.050 4.050 20 C -0.087 4.087 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 7.874 12.249 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.296 3.704 15 O -0.417 6.417 16 C -0.053 4.053 17 C -0.197 4.197 18 C -0.194 4.194 19 C -0.050 4.050 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.096 4.096 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.570 7.740 11.351 17.334 hybrid contribution 1.345 -0.154 0.138 1.361 sum -9.225 7.586 11.489 16.572 Atomic orbital electron populations 1.21837 0.98360 0.97906 1.01287 1.21929 0.92579 0.99910 1.02160 1.18753 0.94056 0.89108 0.81114 0.93433 1.21236 0.90792 1.38919 1.06197 0.92164 1.24886 0.98506 0.94876 0.95411 1.69902 1.35054 1.37619 1.09364 0.86478 0.85021 0.78415 0.77363 1.20580 1.21107 1.19880 1.46466 1.14421 1.56236 1.18328 1.20036 0.82737 0.79322 0.88335 1.90685 1.51382 1.59348 1.40257 1.19810 0.93731 0.96170 0.95560 1.21899 1.02867 0.97981 0.96946 1.21867 0.97667 0.98019 1.01843 1.19317 0.93689 0.95386 0.96624 1.20913 0.97412 0.95387 0.96749 1.20936 0.92525 1.00476 0.99975 1.19839 0.95526 0.96850 0.97424 1.20748 0.93778 1.00180 1.02046 1.20900 0.97209 0.96750 0.99399 1.21083 0.92292 0.99772 1.00034 0.93232 0.96009 0.94207 0.88387 0.95141 0.92611 0.78138 0.91621 0.91645 0.91852 0.91928 0.91877 0.91543 0.86380 0.86467 0.91591 0.91771 0.91845 0.86546 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.42 4.86 -54.93 -0.27 -14.69 16 14 C 0.51 10.02 4.91 -10.99 -0.05 9.97 16 15 O -0.54 -12.60 12.67 5.56 0.07 -12.53 16 16 C -0.05 -0.73 0.72 -156.81 -0.11 -0.85 16 17 C -0.14 -1.74 7.11 37.16 0.26 -1.47 16 18 C -0.14 -1.73 8.07 37.16 0.30 -1.43 16 19 C -0.05 -0.76 4.23 -104.62 -0.44 -1.20 16 20 C -0.09 -1.33 8.38 -39.58 -0.33 -1.66 16 21 C -0.12 -1.66 9.70 -39.58 -0.38 -2.05 16 22 C -0.10 -1.22 5.88 -104.62 -0.62 -1.83 16 23 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 24 C -0.12 -1.58 9.70 -39.59 -0.38 -1.96 16 25 C -0.11 -1.56 8.99 -39.58 -0.36 -1.92 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.88 5.63 -51.93 -0.29 0.59 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.92 7.45 -40.82 -0.30 6.62 16 33 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 34 H 0.06 0.66 7.77 -51.93 -0.40 0.26 16 35 H 0.06 0.83 7.25 -51.92 -0.38 0.46 16 36 H 0.06 0.83 7.08 -51.93 -0.37 0.47 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.80 7.27 -51.93 -0.38 0.42 16 39 H 0.12 1.84 7.23 -52.49 -0.38 1.46 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 45 H 0.12 1.46 5.91 -52.48 -0.31 1.15 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -30.32 353.45 -8.65 -38.98 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.25 Total: 8.58 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.14 Total: -17.08 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.36 Total: -38.79 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.32 -8.65 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.780 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds