Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47137 * 2 1 4 4 H 1.09000 * 109.47453 * 305.00546 * 3 2 1 5 5 C 1.50699 * 109.47315 * 185.00153 * 3 2 1 6 6 H 1.07998 * 120.00378 * 240.00159 * 5 3 2 7 7 C 1.37878 * 119.99732 * 60.00791 * 5 3 2 8 8 N 1.31519 * 120.00078 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47288 * 89.99488 * 9 7 5 11 11 H 1.48494 * 109.46904 * 209.99439 * 9 7 5 12 12 H 1.48498 * 109.46954 * 329.99543 * 9 7 5 13 13 N 1.46504 * 109.46979 * 65.00500 * 3 2 1 14 14 C 1.34772 * 119.99935 * 275.27504 * 13 3 2 15 15 O 1.21282 * 120.00160 * 359.72570 * 14 13 3 16 16 C 1.50700 * 120.00089 * 179.72308 * 14 13 3 17 17 C 1.53002 * 109.47171 * 294.51309 * 16 14 13 18 18 C 1.52998 * 109.47286 * 54.51169 * 16 14 13 19 19 C 1.50703 * 109.47302 * 174.51389 * 16 14 13 20 20 C 1.38234 * 119.99914 * 294.11833 * 19 16 14 21 21 C 1.38236 * 120.00177 * 179.74137 * 20 19 16 22 22 C 1.38240 * 119.99457 * 0.55497 * 21 20 19 23 23 C 1.50702 * 119.99674 * 179.72097 * 22 21 20 24 24 C 1.38228 * 120.00173 * 359.69564 * 22 21 20 25 25 C 1.38231 * 120.00129 * 114.38943 * 19 16 14 26 26 H 1.08999 * 109.47384 * 59.99811 * 1 2 3 27 27 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46742 * 299.99556 * 1 2 3 29 29 H 1.09005 * 109.47230 * 240.00893 * 2 1 3 30 30 H 1.08990 * 109.47651 * 120.00718 * 2 1 3 31 31 H 0.97001 * 119.99524 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00069 * 94.99303 * 13 3 2 33 33 H 1.08999 * 109.46988 * 59.99740 * 17 16 14 34 34 H 1.08994 * 109.47454 * 180.02562 * 17 16 14 35 35 H 1.09008 * 109.47161 * 299.99965 * 17 16 14 36 36 H 1.09002 * 109.46628 * 60.00085 * 18 16 14 37 37 H 1.08996 * 109.47174 * 179.97438 * 18 16 14 38 38 H 1.08999 * 109.47010 * 300.00344 * 18 16 14 39 39 H 1.08002 * 119.99751 * 359.97438 * 20 19 16 40 40 H 1.07993 * 120.00193 * 180.27190 * 21 20 19 41 41 H 1.08995 * 109.47563 * 269.97660 * 23 22 21 42 42 H 1.09003 * 109.47201 * 29.98101 * 23 22 21 43 43 H 1.09000 * 109.47072 * 149.97317 * 23 22 21 44 44 H 1.08004 * 120.00338 * 180.02562 * 24 22 21 45 45 H 1.08007 * 120.00495 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4061 0.3369 -2.1731 9 14 6.0049 0.8802 -1.3814 10 1 6.5539 -0.3518 -0.7602 11 1 6.3834 0.9217 -2.8167 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0974 1.2519 14 6 0.4332 2.6595 1.3690 15 8 -0.3415 2.6274 0.4364 16 6 0.0323 3.3277 2.6589 17 6 -0.0526 2.2803 3.7710 18 6 1.0746 4.3839 3.0316 19 6 -1.3118 3.9872 2.4864 20 6 -1.4514 5.0553 1.6200 21 6 -2.6854 5.6569 1.4577 22 6 -3.7772 5.1977 2.1705 23 6 -5.1211 5.8576 1.9983 24 6 -3.6364 4.1330 3.0408 25 6 -2.4037 3.5278 3.1987 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8292 -0.0614 -2.9498 32 1 2.2720 2.1230 1.9979 33 1 0.9194 1.8032 3.8958 34 1 -0.3431 2.7635 4.7038 35 1 -0.7953 1.5278 3.5055 36 1 1.1350 5.1300 2.2393 37 1 0.7843 4.8675 3.9643 38 1 2.0467 3.9068 3.1564 39 1 -0.5972 5.4173 1.0671 40 1 -2.7954 6.4885 0.7776 41 1 -5.2225 6.6691 2.7189 42 1 -5.2029 6.2570 0.9874 43 1 -5.9100 5.1239 2.1640 44 1 -4.4895 3.7740 3.5973 45 1 -2.2936 2.6963 3.8793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183816664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -50.775337 kcal Electronic energy + Delta-G solvation = -23751.690411 eV Core-core repulsion = 20539.477239 eV Total energy + Delta-G solvation = -3212.213171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55073 -39.82879 -37.11475 -36.29916 -34.27260 -32.98837 -32.10171 -31.88256 -28.92055 -28.30615 -27.41053 -25.30808 -24.25657 -23.20272 -22.42841 -21.35954 -20.42027 -18.75416 -17.62028 -17.26111 -16.96711 -16.40702 -16.12945 -15.87786 -15.58948 -14.93856 -14.66732 -14.56040 -14.49645 -14.30354 -14.13858 -13.58911 -13.31411 -13.24876 -13.13749 -12.99125 -12.94362 -12.88766 -12.68537 -12.64726 -12.51618 -12.31925 -12.15329 -12.04910 -11.68897 -11.61663 -11.51123 -11.03541 -10.56778 -10.36908 -9.74864 -9.56157 -9.32771 -8.15420 -6.32844 0.46821 0.57523 1.44268 1.44947 1.55282 1.93906 2.36549 2.62280 3.02411 3.14056 3.57966 3.84037 4.01442 4.10611 4.16270 4.17703 4.21310 4.48154 4.56430 4.57843 4.59200 4.73804 4.75464 4.82081 4.85917 4.86584 4.90079 4.93205 5.01369 5.07144 5.20088 5.22546 5.25199 5.29220 5.33902 5.44494 5.56893 5.59026 5.66288 5.74734 5.77892 5.81210 5.95779 6.18347 6.19563 6.76060 7.05966 7.34924 7.65820 8.89751 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003947 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.660487 B = 7093.113837 C = 7218.255883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.508 3.492 15 O -0.582 6.582 16 C -0.040 4.040 17 C -0.137 4.137 18 C -0.134 4.134 19 C -0.071 4.071 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.129 4.129 25 C -0.120 4.120 26 H 0.021 0.979 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 8.097 14.879 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.295 3.705 15 O -0.462 6.462 16 C -0.043 4.043 17 C -0.194 4.194 18 C -0.191 4.191 19 C -0.071 4.071 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.100 4.100 23 C -0.165 4.165 24 C -0.146 4.146 25 C -0.138 4.138 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.163 0.837 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.856 7.978 14.026 19.448 hybrid contribution 1.342 -0.173 -0.715 1.530 sum -9.514 7.805 13.311 18.128 Atomic orbital electron populations 1.21663 0.97145 0.98923 1.00144 1.21772 0.93552 0.99314 1.01215 1.18308 0.93505 0.89022 0.81462 0.98870 1.21582 0.91466 1.38787 1.06616 0.91058 1.25773 1.03247 0.94441 0.95036 1.70062 1.37019 1.38421 1.09902 0.85389 0.79223 0.78897 0.77091 1.19636 1.21396 1.18860 1.46225 1.15371 1.56296 1.17277 1.20948 0.81600 0.78280 0.89685 1.90662 1.52487 1.60708 1.42358 1.19766 0.94302 0.96936 0.93274 1.21935 1.03225 0.97204 0.97066 1.21881 0.97446 0.97249 1.02551 1.19445 0.94359 0.95751 0.97569 1.20969 0.97761 0.96527 0.97570 1.21182 0.92482 1.01030 1.00651 1.20259 0.96507 0.96692 0.96495 1.20803 0.92108 1.00816 1.02816 1.21299 0.97757 0.96350 0.99233 1.21369 0.92190 1.00170 1.00074 0.95992 0.93742 0.93669 0.91166 0.93988 0.92689 0.76446 0.90891 0.88567 0.92617 0.93393 0.89223 0.90750 0.88126 0.85327 0.89898 0.91441 0.90552 0.83743 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.51 2.24 44.24 0.10 14.61 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.86 11.29 21.45 0.24 -52.62 16 9 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 13 N -0.70 -29.02 4.86 -446.10 -2.17 -31.19 16 14 C 0.51 20.25 4.91 87.66 0.43 20.68 16 15 O -0.58 -28.40 12.67 -3.04 -0.04 -28.43 16 16 C -0.04 -1.14 0.72 -53.67 -0.04 -1.18 16 17 C -0.14 -3.07 7.11 71.98 0.51 -2.56 16 18 C -0.13 -3.24 8.07 71.98 0.58 -2.66 16 19 C -0.07 -2.11 4.23 -19.87 -0.08 -2.20 16 20 C -0.11 -3.47 8.38 22.27 0.19 -3.29 16 21 C -0.14 -3.70 9.70 22.27 0.22 -3.49 16 22 C -0.10 -2.35 5.88 -19.87 -0.12 -2.46 16 23 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 24 C -0.13 -2.95 9.70 22.27 0.22 -2.73 16 25 C -0.12 -3.07 8.99 22.27 0.20 -2.87 16 26 H 0.02 1.09 7.84 -2.39 -0.02 1.07 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 2.02 5.63 -2.39 -0.01 2.00 16 29 H 0.07 3.93 5.95 -2.38 -0.01 3.92 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.40 14.09 7.45 -92.71 -0.69 13.40 16 33 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 34 H 0.10 1.59 7.77 -2.39 -0.02 1.57 16 35 H 0.05 1.34 7.25 -2.38 -0.02 1.32 16 36 H 0.05 1.29 7.08 -2.39 -0.02 1.27 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.65 7.27 -2.39 -0.02 1.63 16 39 H 0.10 3.38 7.23 -2.91 -0.02 3.36 16 40 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 43 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 44 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.14 2.97 5.91 -2.91 -0.02 2.96 16 Total: -1.00 -68.32 353.45 4.71 -63.61 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.28 Total: 31.94 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.37 Total: -27.51 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.92 Total: -83.81 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.04 Total: -28.43 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.32 4.71 -63.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.835 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds