Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46728 * 2 1 4 4 H 1.09006 * 109.46991 * 304.99853 * 3 2 1 5 5 C 1.50702 * 109.47181 * 185.00048 * 3 2 1 6 6 H 1.08000 * 119.99836 * 240.00107 * 5 3 2 7 7 C 1.37873 * 120.00209 * 59.99570 * 5 3 2 8 8 N 1.31518 * 119.99717 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00170 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46947 * 89.99876 * 9 7 5 11 11 H 1.48496 * 109.47203 * 210.00037 * 9 7 5 12 12 H 1.48502 * 109.47203 * 330.00244 * 9 7 5 13 13 N 1.46499 * 109.47391 * 64.99732 * 3 2 1 14 14 C 1.34777 * 120.00197 * 275.00033 * 13 3 2 15 15 O 1.21285 * 119.99842 * 356.16861 * 14 13 3 16 16 C 1.50699 * 120.00252 * 176.16419 * 14 13 3 17 17 H 1.09004 * 109.46955 * 47.07128 * 16 14 13 18 18 C 1.50701 * 109.47026 * 167.06695 * 16 14 13 19 19 C 1.38236 * 119.99877 * 59.73318 * 18 16 14 20 20 C 1.38240 * 119.99828 * 179.80914 * 19 18 16 21 21 C 1.38232 * 119.99895 * 0.39531 * 20 19 18 22 22 C 1.38240 * 120.00482 * 359.85549 * 21 20 19 23 23 C 1.38238 * 119.99955 * 239.99979 * 18 16 14 24 24 C 1.52992 * 109.47511 * 287.06880 * 16 14 13 25 25 C 1.52996 * 109.47518 * 185.76341 * 24 16 14 26 26 C 1.53004 * 109.46984 * 65.76633 * 24 16 14 27 27 H 1.08995 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47331 * 300.00106 * 1 2 3 29 29 H 1.08998 * 109.46692 * 60.00324 * 1 2 3 30 30 H 1.08996 * 109.47331 * 239.99894 * 2 1 3 31 31 H 1.08998 * 109.47049 * 119.99266 * 2 1 3 32 32 H 0.97006 * 119.99637 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99721 * 95.00223 * 13 3 2 34 34 H 1.08002 * 120.00082 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.99928 * 180.22580 * 20 19 18 36 36 H 1.08004 * 120.00144 * 179.83554 * 21 20 19 37 37 H 1.07991 * 120.00537 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00083 * 359.97438 * 23 18 16 39 39 H 1.09002 * 109.47455 * 305.76983 * 24 16 14 40 40 H 1.08993 * 109.47353 * 300.00618 * 25 24 16 41 41 H 1.09004 * 109.46557 * 60.00414 * 25 24 16 42 42 H 1.08998 * 109.47438 * 179.97438 * 25 24 16 43 43 H 1.08996 * 109.47339 * 187.58533 * 26 24 16 44 44 H 1.09008 * 109.47227 * 307.58093 * 26 24 16 45 45 H 1.08997 * 109.47127 * 67.58096 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8786 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8803 -1.3810 10 1 6.5539 -0.3516 -0.7596 11 1 6.3836 0.9217 -2.8163 12 1 6.5575 2.0723 -0.6888 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3669 15 8 -0.3130 2.6936 0.4126 16 6 0.0032 3.2619 2.6813 17 1 0.8027 3.8895 3.0751 18 6 -1.2336 4.0969 2.4713 19 6 -2.3831 3.5155 1.9699 20 6 -3.5189 4.2806 1.7810 21 6 -3.5026 5.6288 2.0859 22 6 -2.3515 6.2114 2.5825 23 6 -1.2170 5.4454 2.7750 24 6 -0.3015 2.1401 3.6759 25 6 -0.8760 2.7398 4.9608 26 6 0.9871 1.3811 3.9991 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8294 -0.0612 -2.9497 33 1 2.2719 2.1233 1.9977 34 1 -2.3947 2.4629 1.7282 35 1 -4.4181 3.8256 1.3927 36 1 -4.3892 6.2271 1.9358 37 1 -2.3387 7.2647 2.8203 38 1 -0.3177 5.9005 3.1631 39 1 -1.0273 1.4542 3.2389 40 1 -0.1504 3.4257 5.3978 41 1 -1.7941 3.2805 4.7305 42 1 -1.0936 1.9406 5.6693 43 1 0.7504 0.5025 4.5991 44 1 1.4674 1.0691 3.0717 45 1 1.6614 2.0310 4.5567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183837037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -31.116306 kcal Electronic energy + Delta-G solvation = -24064.898796 eV Core-core repulsion = 20853.538104 eV Total energy + Delta-G solvation = -3211.360692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18353 -38.35464 -35.85016 -35.02270 -32.35537 -31.23358 -30.90698 -30.65359 -27.75875 -26.78704 -26.35196 -23.07250 -22.52863 -21.65641 -20.87851 -19.49431 -19.32062 -17.14040 -16.75504 -15.85865 -15.39256 -15.06227 -14.93789 -14.42840 -14.34190 -13.92272 -13.70900 -13.21004 -13.04978 -12.67997 -12.49255 -12.40018 -12.27861 -12.09624 -11.99633 -11.47310 -11.32304 -11.26532 -11.00700 -10.95848 -10.91525 -10.78554 -10.58546 -10.42951 -10.29338 -10.12293 -9.63842 -9.04023 -8.94632 -8.63832 -8.50653 -8.43430 -7.75625 -6.11604 -4.20890 1.53409 1.63133 3.24098 3.31400 3.33320 3.43184 3.90096 4.22061 4.41921 4.72975 4.93389 5.01812 5.12490 5.14349 5.19920 5.29003 5.39093 5.53357 5.58471 5.66959 5.74084 5.77366 5.85111 5.91625 6.00808 6.15482 6.21080 6.24903 6.35422 6.36963 6.42372 6.48600 6.62522 6.64829 6.70582 6.86906 7.02744 7.18578 7.20987 7.37231 7.48783 7.62875 7.74551 7.92111 8.19396 8.70146 8.79987 9.18178 9.46918 10.93604 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004437 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.602905 B = 6308.965730 C = 6527.206906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.509 3.491 15 O -0.540 6.540 16 C -0.071 4.071 17 H 0.093 0.907 18 C -0.054 4.054 19 C -0.076 4.076 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.116 4.116 24 C -0.078 4.078 25 C -0.143 4.143 26 C -0.169 4.169 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.389 0.611 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 5.831 13.061 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.093 4.093 17 H 0.111 0.889 18 C -0.054 4.054 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.097 4.097 25 C -0.200 4.200 26 C -0.226 4.226 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.533 5.730 12.160 16.480 hybrid contribution 1.357 0.002 0.144 1.365 sum -8.176 5.732 12.304 15.846 Atomic orbital electron populations 1.21828 0.98516 0.98061 1.01082 1.21927 0.92482 0.99872 1.02236 1.18771 0.94119 0.89086 0.81289 0.93313 1.21234 0.90802 1.38920 1.06241 0.92194 1.24874 0.98498 0.94850 0.95389 1.69897 1.35068 1.37631 1.09349 0.86481 0.85030 0.78415 0.77376 1.20567 1.21101 1.19890 1.46725 1.14625 1.55983 1.18442 1.20105 0.82802 0.78774 0.89030 1.90676 1.53210 1.58397 1.39571 1.20502 0.96283 0.97088 0.95378 0.88888 1.19331 0.94203 0.93440 0.98453 1.20976 0.91934 1.00397 0.96109 1.21106 0.98367 0.94224 1.00709 1.21058 0.98042 0.95139 1.00224 1.20995 0.93382 0.99372 1.00852 1.20996 0.98255 0.93298 1.00890 1.20984 0.98368 0.95593 0.94750 1.21843 1.01062 1.00606 0.96538 1.22214 0.97052 1.00102 1.03242 0.95836 0.94378 0.93192 0.88339 0.95071 0.92607 0.77689 0.86028 0.86468 0.86673 0.86543 0.86472 0.90732 0.92686 0.92372 0.92719 0.92414 0.90300 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.56 37.16 0.32 -2.68 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.65 2.25 -69.08 -0.16 6.49 16 4 H 0.05 1.42 7.53 -51.93 -0.39 1.03 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.24 3.77 -54.93 -0.21 -14.45 16 14 C 0.51 9.78 5.22 -10.99 -0.06 9.72 16 15 O -0.54 -12.29 12.14 5.55 0.07 -12.23 16 16 C -0.07 -1.04 1.99 -92.93 -0.19 -1.22 16 17 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 18 C -0.05 -0.79 3.02 -104.62 -0.32 -1.11 16 19 C -0.08 -1.16 7.84 -39.58 -0.31 -1.47 16 20 C -0.13 -1.69 10.05 -39.58 -0.40 -2.08 16 21 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 22 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.12 -1.54 9.67 -39.58 -0.38 -1.92 16 24 C -0.08 -0.99 2.24 -90.62 -0.20 -1.19 16 25 C -0.14 -1.51 8.86 37.16 0.33 -1.19 16 26 C -0.17 -2.06 8.72 37.16 0.32 -1.74 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.79 5.73 -51.93 -0.30 0.49 16 29 H 0.05 1.17 7.90 -51.93 -0.41 0.76 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 6.90 6.65 -40.82 -0.27 6.63 16 34 H 0.12 1.95 7.27 -52.49 -0.38 1.57 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.33 7.95 -52.49 -0.42 0.92 16 39 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.65 7.01 -51.93 -0.36 0.28 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.15 4.89 -51.92 -0.25 0.89 16 45 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -29.41 351.46 -8.86 -38.27 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.25 Total: 9.55 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.37 Total: -17.96 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.42 Total: -38.41 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.41 -8.86 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183837037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.153 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds