Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46728 * 2 1 4 4 H 1.09006 * 109.46991 * 304.99853 * 3 2 1 5 5 C 1.50702 * 109.47181 * 185.00048 * 3 2 1 6 6 H 1.08000 * 119.99836 * 240.00107 * 5 3 2 7 7 C 1.37873 * 120.00209 * 59.99570 * 5 3 2 8 8 N 1.31518 * 119.99717 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00170 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46947 * 89.99876 * 9 7 5 11 11 H 1.48496 * 109.47203 * 210.00037 * 9 7 5 12 12 H 1.48502 * 109.47203 * 330.00244 * 9 7 5 13 13 N 1.46499 * 109.47391 * 64.99732 * 3 2 1 14 14 C 1.34777 * 120.00197 * 275.00033 * 13 3 2 15 15 O 1.21285 * 119.99842 * 356.16861 * 14 13 3 16 16 C 1.50699 * 120.00252 * 176.16419 * 14 13 3 17 17 H 1.09004 * 109.46955 * 47.07128 * 16 14 13 18 18 C 1.50701 * 109.47026 * 167.06695 * 16 14 13 19 19 C 1.38236 * 119.99877 * 59.73318 * 18 16 14 20 20 C 1.38240 * 119.99828 * 179.80914 * 19 18 16 21 21 C 1.38232 * 119.99895 * 0.39531 * 20 19 18 22 22 C 1.38240 * 120.00482 * 359.85549 * 21 20 19 23 23 C 1.38238 * 119.99955 * 239.99979 * 18 16 14 24 24 C 1.52992 * 109.47511 * 287.06880 * 16 14 13 25 25 C 1.52996 * 109.47518 * 185.76341 * 24 16 14 26 26 C 1.53004 * 109.46984 * 65.76633 * 24 16 14 27 27 H 1.08995 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47331 * 300.00106 * 1 2 3 29 29 H 1.08998 * 109.46692 * 60.00324 * 1 2 3 30 30 H 1.08996 * 109.47331 * 239.99894 * 2 1 3 31 31 H 1.08998 * 109.47049 * 119.99266 * 2 1 3 32 32 H 0.97006 * 119.99637 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99721 * 95.00223 * 13 3 2 34 34 H 1.08002 * 120.00082 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.99928 * 180.22580 * 20 19 18 36 36 H 1.08004 * 120.00144 * 179.83554 * 21 20 19 37 37 H 1.07991 * 120.00537 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00083 * 359.97438 * 23 18 16 39 39 H 1.09002 * 109.47455 * 305.76983 * 24 16 14 40 40 H 1.08993 * 109.47353 * 300.00618 * 25 24 16 41 41 H 1.09004 * 109.46557 * 60.00414 * 25 24 16 42 42 H 1.08998 * 109.47438 * 179.97438 * 25 24 16 43 43 H 1.08996 * 109.47339 * 187.58533 * 26 24 16 44 44 H 1.09008 * 109.47227 * 307.58093 * 26 24 16 45 45 H 1.08997 * 109.47127 * 67.58096 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8786 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8803 -1.3810 10 1 6.5539 -0.3516 -0.7596 11 1 6.3836 0.9217 -2.8163 12 1 6.5575 2.0723 -0.6888 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3669 15 8 -0.3130 2.6936 0.4126 16 6 0.0032 3.2619 2.6813 17 1 0.8027 3.8895 3.0751 18 6 -1.2336 4.0969 2.4713 19 6 -2.3831 3.5155 1.9699 20 6 -3.5189 4.2806 1.7810 21 6 -3.5026 5.6288 2.0859 22 6 -2.3515 6.2114 2.5825 23 6 -1.2170 5.4454 2.7750 24 6 -0.3015 2.1401 3.6759 25 6 -0.8760 2.7398 4.9608 26 6 0.9871 1.3811 3.9991 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8294 -0.0612 -2.9497 33 1 2.2719 2.1233 1.9977 34 1 -2.3947 2.4629 1.7282 35 1 -4.4181 3.8256 1.3927 36 1 -4.3892 6.2271 1.9358 37 1 -2.3387 7.2647 2.8203 38 1 -0.3177 5.9005 3.1631 39 1 -1.0273 1.4542 3.2389 40 1 -0.1504 3.4257 5.3978 41 1 -1.7941 3.2805 4.7305 42 1 -1.0936 1.9406 5.6693 43 1 0.7504 0.5025 4.5991 44 1 1.4674 1.0691 3.0717 45 1 1.6614 2.0310 4.5567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183837037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = -46.215959 kcal Electronic energy + Delta-G solvation = -24065.553566 eV Core-core repulsion = 20853.538104 eV Total energy + Delta-G solvation = -3212.015462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50624 -39.63694 -37.11238 -36.74003 -34.25317 -32.73767 -32.26556 -31.66900 -29.35130 -27.88085 -27.72952 -24.98700 -23.54798 -22.86171 -22.26385 -21.13910 -20.73548 -18.81667 -17.86659 -17.44762 -17.09981 -16.43190 -16.23004 -15.95311 -15.56872 -15.20140 -14.98008 -14.61977 -14.29055 -14.21866 -13.93706 -13.58114 -13.48798 -13.30451 -13.17356 -13.11874 -12.89750 -12.88360 -12.66569 -12.36696 -12.18970 -12.12179 -11.93082 -11.83016 -11.60817 -11.57602 -11.44350 -11.00975 -10.58915 -10.42325 -9.69390 -9.53001 -9.51470 -8.15054 -6.32352 0.51000 0.61051 1.44393 1.45165 1.55365 1.91445 2.37041 2.66071 3.05836 3.14368 3.64497 3.81382 3.98819 4.15986 4.23101 4.27622 4.34307 4.42290 4.49348 4.49910 4.56026 4.69383 4.73500 4.76940 4.86162 4.86621 5.04856 5.05292 5.07311 5.18737 5.23852 5.26355 5.27549 5.40979 5.44965 5.50741 5.57475 5.63759 5.66275 5.69774 5.80522 5.82165 5.95971 6.18949 6.20522 6.76493 7.05069 7.35374 7.65051 8.90044 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004437 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.602905 B = 6308.965730 C = 6527.206906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.118 4.118 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.580 6.580 16 C -0.059 4.059 17 H 0.114 0.886 18 C -0.071 4.071 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.073 4.073 25 C -0.134 4.134 26 C -0.166 4.166 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 7.213 15.550 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.080 4.080 17 H 0.132 0.868 18 C -0.071 4.071 19 C -0.117 4.117 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.092 4.092 25 C -0.191 4.191 26 C -0.224 4.224 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.038 7.120 14.694 18.663 hybrid contribution 1.115 -0.385 -0.655 1.350 sum -7.923 6.735 14.039 17.471 Atomic orbital electron populations 1.21653 0.97161 0.99082 1.00082 1.21753 0.93570 0.99174 1.01194 1.18319 0.93473 0.89084 0.81612 0.98775 1.21584 0.91552 1.38774 1.06614 0.91186 1.25747 1.03164 0.94429 0.95029 1.70058 1.36990 1.38437 1.09881 0.85405 0.79329 0.78877 0.77090 1.19622 1.21394 1.18928 1.46509 1.15546 1.56042 1.17325 1.20951 0.81718 0.77765 0.90385 1.90659 1.54138 1.59712 1.41569 1.20471 0.97011 0.97789 0.92738 0.86785 1.19406 0.93828 0.94346 0.99548 1.20951 0.93317 0.99739 0.97712 1.21346 0.98313 0.95094 1.00835 1.21425 0.99275 0.94674 0.99095 1.21400 0.92761 1.00768 0.99633 1.21287 0.99595 0.92603 1.00680 1.20958 0.98344 0.94700 0.95209 1.21762 1.00941 1.01118 0.95320 1.22185 0.96860 1.00977 1.02342 0.93655 0.93654 0.95864 0.91217 0.93990 0.92700 0.76060 0.88301 0.85269 0.83886 0.83573 0.84494 0.92687 0.91151 0.93069 0.91424 0.91264 0.92862 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.56 71.98 0.62 -4.92 16 2 C -0.12 -5.81 5.45 30.60 0.17 -5.64 16 3 C 0.28 14.29 2.25 44.25 0.10 14.39 16 4 H -0.01 -0.35 7.53 -2.38 -0.02 -0.37 16 5 C -0.55 -28.93 8.73 25.60 0.22 -28.70 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 N -0.70 -28.77 3.77 -446.08 -1.68 -30.46 16 14 C 0.50 19.83 5.22 87.66 0.46 20.29 16 15 O -0.58 -27.70 12.14 -3.05 -0.04 -27.73 16 16 C -0.06 -1.68 1.99 -12.29 -0.02 -1.70 16 17 H 0.11 2.75 7.88 -2.38 -0.02 2.73 16 18 C -0.07 -2.04 3.02 -19.86 -0.06 -2.10 16 19 C -0.10 -3.06 7.84 22.27 0.17 -2.88 16 20 C -0.14 -3.62 10.05 22.27 0.22 -3.40 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 22 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 23 C -0.12 -3.00 9.67 22.27 0.22 -2.79 16 24 C -0.07 -1.77 2.24 -10.80 -0.02 -1.79 16 25 C -0.13 -2.52 8.86 71.98 0.64 -1.88 16 26 C -0.17 -3.75 8.72 71.98 0.63 -3.13 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.95 5.73 -2.39 -0.01 1.94 16 29 H 0.02 1.13 7.90 -2.39 -0.02 1.11 16 30 H 0.07 3.87 5.95 -2.39 -0.01 3.85 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 33 H 0.40 14.12 6.65 -92.71 -0.62 13.51 16 34 H 0.10 3.40 7.27 -2.91 -0.02 3.38 16 35 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.15 2.23 8.06 -2.92 -0.02 2.20 16 38 H 0.14 2.69 7.95 -2.91 -0.02 2.67 16 39 H 0.05 1.54 7.61 -2.39 -0.02 1.52 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.05 7.01 -2.38 -0.02 1.03 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.49 4.89 -2.38 -0.01 1.48 16 45 H 0.08 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -66.48 351.46 5.13 -61.35 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.35 Total: 33.14 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.23 Total: -28.03 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.44 Total: -82.86 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.04 Total: -27.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.48 5.13 -61.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183837037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.137 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds