Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09006 * 109.47465 * 305.00324 * 3 2 1 5 5 C 1.50693 * 109.47489 * 184.99940 * 3 2 1 6 6 H 1.08005 * 120.00604 * 239.99991 * 5 3 2 7 7 C 1.37881 * 119.99853 * 60.00044 * 5 3 2 8 8 N 1.31505 * 119.99849 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47148 * 90.00146 * 9 7 5 11 11 H 1.48508 * 109.46920 * 209.99838 * 9 7 5 12 12 H 1.48502 * 109.47375 * 329.99605 * 9 7 5 13 13 N 1.46500 * 109.46963 * 65.00087 * 3 2 1 14 14 C 1.34781 * 120.00184 * 274.99862 * 13 3 2 15 15 O 1.21284 * 119.99908 * 355.17021 * 14 13 3 16 16 C 1.50704 * 120.00183 * 175.16868 * 14 13 3 17 17 H 1.08996 * 109.46798 * 25.05467 * 16 14 13 18 18 C 1.50697 * 109.46784 * 265.05402 * 16 14 13 19 19 C 1.38229 * 120.00641 * 299.72724 * 18 16 14 20 20 C 1.38240 * 120.00389 * 179.79018 * 19 18 16 21 21 C 1.38235 * 119.99408 * 0.44360 * 20 19 18 22 22 C 1.38229 * 120.00333 * 359.80903 * 21 20 19 23 23 C 1.38238 * 119.99332 * 120.00326 * 18 16 14 24 24 C 1.53001 * 109.46946 * 145.05903 * 16 14 13 25 25 C 1.52999 * 109.47034 * 178.37316 * 24 16 14 26 26 C 1.52998 * 109.46822 * 298.36728 * 24 16 14 27 27 H 1.09000 * 109.47210 * 59.99627 * 1 2 3 28 28 H 1.09006 * 109.47111 * 300.00053 * 1 2 3 29 29 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47509 * 119.99697 * 2 1 3 31 31 H 1.09001 * 109.47431 * 240.00583 * 2 1 3 32 32 H 0.97002 * 120.00211 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00128 * 94.99991 * 13 3 2 34 34 H 1.08002 * 119.99818 * 359.97438 * 19 18 16 35 35 H 1.07999 * 120.00221 * 180.27182 * 20 19 18 36 36 H 1.07999 * 119.99434 * 179.83485 * 21 20 19 37 37 H 1.08005 * 120.00086 * 180.02562 * 22 21 20 38 38 H 1.07995 * 120.00465 * 359.97438 * 23 18 16 39 39 H 1.08995 * 109.47332 * 58.36582 * 24 16 14 40 40 H 1.08995 * 109.47660 * 59.99467 * 25 24 16 41 41 H 1.09000 * 109.46880 * 179.97438 * 25 24 16 42 42 H 1.09007 * 109.46827 * 299.99657 * 25 24 16 43 43 H 1.09005 * 109.47536 * 57.46050 * 26 24 16 44 44 H 1.09006 * 109.47414 * 177.45614 * 26 24 16 45 45 H 1.08998 * 109.47653 * 297.45491 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5538 -0.3518 -0.7598 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3059 2.7099 0.4079 16 6 -0.0054 3.2418 2.6876 17 1 0.8710 3.5198 3.2729 18 6 -0.8082 2.2138 3.4424 19 6 -1.9748 1.7112 2.8973 20 6 -2.7089 0.7651 3.5879 21 6 -2.2811 0.3284 4.8277 22 6 -1.1173 0.8348 5.3752 23 6 -0.3809 1.7777 4.6826 24 6 -0.8677 4.4811 2.4400 25 6 -1.3484 5.0437 3.7792 26 6 -0.0403 5.5405 1.7094 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.8292 -0.0608 -2.9499 33 1 2.2719 2.1231 1.9978 34 1 -2.3112 2.0556 1.9305 35 1 -3.6181 0.3692 3.1600 36 1 -2.8561 -0.4089 5.3684 37 1 -0.7829 0.4932 6.3437 38 1 0.5284 2.1734 5.1104 39 1 -1.7290 4.2086 1.8302 40 1 -0.4871 5.3163 4.3890 41 1 -1.9624 5.9269 3.6028 42 1 -1.9379 4.2890 4.2998 43 1 0.3399 5.1247 0.7762 44 1 -0.6671 6.4056 1.4929 45 1 0.7959 5.8460 2.3383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183837064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -39.790039 kcal Electronic energy + Delta-G solvation = -24077.960882 eV Core-core repulsion = 20866.224068 eV Total energy + Delta-G solvation = -3211.736813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14431 -38.38064 -35.95933 -34.70028 -32.37280 -31.46087 -30.84268 -30.70525 -27.64440 -26.88552 -26.29859 -23.06273 -22.59179 -21.69680 -20.89890 -19.45290 -19.10704 -17.20304 -16.80066 -15.82622 -15.35646 -15.25076 -14.74466 -14.50433 -14.36711 -14.07453 -13.40717 -13.35743 -13.16519 -12.68018 -12.54359 -12.34676 -12.25003 -12.03012 -11.89568 -11.41468 -11.37412 -11.22088 -11.02405 -10.98563 -10.87331 -10.80909 -10.54553 -10.43537 -10.28363 -10.12337 -9.61281 -9.12186 -8.99998 -8.79180 -8.51352 -8.37258 -7.76379 -6.10340 -4.19441 1.43522 1.52277 3.24921 3.31964 3.33950 3.44251 3.87923 4.15218 4.39948 4.80625 4.92853 5.03843 5.09196 5.15645 5.20919 5.23768 5.38147 5.52935 5.60192 5.67645 5.74514 5.79382 5.84239 5.94859 6.00955 6.13558 6.17360 6.23808 6.41351 6.47581 6.48609 6.50590 6.55945 6.62995 6.68582 6.76554 7.07799 7.10763 7.22127 7.39689 7.51045 7.64943 7.76718 7.93510 8.21072 8.72697 8.81247 9.19486 9.48167 10.94936 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004919 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.031444 B = 5691.294510 C = 6301.821569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.515 3.485 15 O -0.547 6.547 16 C -0.068 4.068 17 H 0.088 0.912 18 C -0.061 4.061 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.073 4.073 25 C -0.144 4.144 26 C -0.150 4.150 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 4.272 13.935 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.090 4.090 17 H 0.106 0.894 18 C -0.061 4.061 19 C -0.119 4.119 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.092 4.092 25 C -0.202 4.202 26 C -0.207 4.207 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.348 4.184 13.027 16.571 hybrid contribution 1.401 -0.206 0.281 1.444 sum -7.947 3.978 13.308 16.003 Atomic orbital electron populations 1.21834 0.98479 0.98111 1.01157 1.21915 0.92552 0.99904 1.02139 1.18756 0.94113 0.89055 0.81191 0.93264 1.21238 0.90822 1.38877 1.06176 0.92192 1.24877 0.98494 0.94871 0.95401 1.69893 1.35058 1.37686 1.09359 0.86483 0.85050 0.78419 0.77359 1.20582 1.21091 1.19885 1.46520 1.14645 1.55805 1.18433 1.20037 0.82597 0.78485 0.88911 1.90641 1.53792 1.58659 1.39477 1.20476 0.98562 0.94530 0.95431 0.89409 1.19439 0.95280 0.97042 0.94382 1.21163 0.94432 0.96370 0.99909 1.21128 1.00030 0.97563 0.95085 1.21098 0.97018 1.00228 0.96066 1.21049 0.95520 0.97583 0.99912 1.21037 0.99774 0.97856 0.94553 1.20940 0.98423 0.92978 0.96877 1.21850 1.00963 1.00597 0.96767 1.21867 0.99550 0.98215 1.01047 0.93288 0.94035 0.95928 0.95183 0.88389 0.92616 0.78162 0.85358 0.86292 0.86500 0.86339 0.86179 0.89899 0.92876 0.92760 0.92519 0.91667 0.92719 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.58 37.16 0.32 -2.80 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.25 -69.09 -0.16 6.64 16 4 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.61 5.02 -54.93 -0.28 -14.88 16 14 C 0.52 9.88 3.82 -10.98 -0.04 9.84 16 15 O -0.55 -12.19 12.85 5.55 0.07 -12.12 16 16 C -0.07 -1.00 1.97 -92.92 -0.18 -1.19 16 17 H 0.09 1.14 7.82 -51.93 -0.41 0.74 16 18 C -0.06 -0.86 3.43 -104.63 -0.36 -1.22 16 19 C -0.10 -1.47 8.55 -39.58 -0.34 -1.81 16 20 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 21 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 23 C -0.11 -1.42 9.67 -39.58 -0.38 -1.81 16 24 C -0.07 -0.99 2.01 -90.62 -0.18 -1.17 16 25 C -0.14 -1.58 8.92 37.16 0.33 -1.25 16 26 C -0.15 -2.04 9.00 37.16 0.33 -1.70 16 27 H 0.05 1.17 7.92 -51.93 -0.41 0.76 16 28 H 0.04 0.90 5.48 -51.93 -0.28 0.62 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 7.10 8.50 -40.82 -0.35 6.76 16 34 H 0.13 2.03 7.11 -52.49 -0.37 1.66 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.27 7.95 -52.49 -0.42 0.86 16 39 H 0.08 1.24 7.09 -51.93 -0.37 0.87 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.63 7.17 -51.93 -0.37 0.26 16 43 H 0.06 1.08 6.88 -51.93 -0.36 0.72 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -29.41 356.27 -9.00 -38.41 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.38 Total: 9.74 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.39 Total: -17.99 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.35 Total: -39.05 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.41 -9.00 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183837064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.378 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds