Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09006 * 109.47465 * 305.00324 * 3 2 1 5 5 C 1.50693 * 109.47489 * 184.99940 * 3 2 1 6 6 H 1.08005 * 120.00604 * 239.99991 * 5 3 2 7 7 C 1.37881 * 119.99853 * 60.00044 * 5 3 2 8 8 N 1.31505 * 119.99849 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47148 * 90.00146 * 9 7 5 11 11 H 1.48508 * 109.46920 * 209.99838 * 9 7 5 12 12 H 1.48502 * 109.47375 * 329.99605 * 9 7 5 13 13 N 1.46500 * 109.46963 * 65.00087 * 3 2 1 14 14 C 1.34781 * 120.00184 * 274.99862 * 13 3 2 15 15 O 1.21284 * 119.99908 * 355.17021 * 14 13 3 16 16 C 1.50704 * 120.00183 * 175.16868 * 14 13 3 17 17 H 1.08996 * 109.46798 * 25.05467 * 16 14 13 18 18 C 1.50697 * 109.46784 * 265.05402 * 16 14 13 19 19 C 1.38229 * 120.00641 * 299.72724 * 18 16 14 20 20 C 1.38240 * 120.00389 * 179.79018 * 19 18 16 21 21 C 1.38235 * 119.99408 * 0.44360 * 20 19 18 22 22 C 1.38229 * 120.00333 * 359.80903 * 21 20 19 23 23 C 1.38238 * 119.99332 * 120.00326 * 18 16 14 24 24 C 1.53001 * 109.46946 * 145.05903 * 16 14 13 25 25 C 1.52999 * 109.47034 * 178.37316 * 24 16 14 26 26 C 1.52998 * 109.46822 * 298.36728 * 24 16 14 27 27 H 1.09000 * 109.47210 * 59.99627 * 1 2 3 28 28 H 1.09006 * 109.47111 * 300.00053 * 1 2 3 29 29 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47509 * 119.99697 * 2 1 3 31 31 H 1.09001 * 109.47431 * 240.00583 * 2 1 3 32 32 H 0.97002 * 120.00211 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00128 * 94.99991 * 13 3 2 34 34 H 1.08002 * 119.99818 * 359.97438 * 19 18 16 35 35 H 1.07999 * 120.00221 * 180.27182 * 20 19 18 36 36 H 1.07999 * 119.99434 * 179.83485 * 21 20 19 37 37 H 1.08005 * 120.00086 * 180.02562 * 22 21 20 38 38 H 1.07995 * 120.00465 * 359.97438 * 23 18 16 39 39 H 1.08995 * 109.47332 * 58.36582 * 24 16 14 40 40 H 1.08995 * 109.47660 * 59.99467 * 25 24 16 41 41 H 1.09000 * 109.46880 * 179.97438 * 25 24 16 42 42 H 1.09007 * 109.46827 * 299.99657 * 25 24 16 43 43 H 1.09005 * 109.47536 * 57.46050 * 26 24 16 44 44 H 1.09006 * 109.47414 * 177.45614 * 26 24 16 45 45 H 1.08998 * 109.47653 * 297.45491 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5538 -0.3518 -0.7598 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0722 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3059 2.7099 0.4079 16 6 -0.0054 3.2418 2.6876 17 1 0.8710 3.5198 3.2729 18 6 -0.8082 2.2138 3.4424 19 6 -1.9748 1.7112 2.8973 20 6 -2.7089 0.7651 3.5879 21 6 -2.2811 0.3284 4.8277 22 6 -1.1173 0.8348 5.3752 23 6 -0.3809 1.7777 4.6826 24 6 -0.8677 4.4811 2.4400 25 6 -1.3484 5.0437 3.7792 26 6 -0.0403 5.5405 1.7094 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.8292 -0.0608 -2.9499 33 1 2.2719 2.1231 1.9978 34 1 -2.3112 2.0556 1.9305 35 1 -3.6181 0.3692 3.1600 36 1 -2.8561 -0.4089 5.3684 37 1 -0.7829 0.4932 6.3437 38 1 0.5284 2.1734 5.1104 39 1 -1.7290 4.2086 1.8302 40 1 -0.4871 5.3163 4.3890 41 1 -1.9624 5.9269 3.6028 42 1 -1.9379 4.2890 4.2998 43 1 0.3399 5.1247 0.7762 44 1 -0.6671 6.4056 1.4929 45 1 0.7959 5.8460 2.3383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183837064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = -55.593695 kcal Electronic energy + Delta-G solvation = -24078.646180 eV Core-core repulsion = 20866.224068 eV Total energy + Delta-G solvation = -3212.422111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45158 -39.65697 -37.38724 -36.31374 -34.28090 -32.90977 -32.27648 -31.71618 -29.26787 -28.06306 -27.65579 -25.01199 -23.56418 -22.84586 -22.34592 -21.23842 -20.46366 -18.87156 -17.85992 -17.50200 -17.13990 -16.42866 -16.17053 -15.97127 -15.65152 -15.24647 -14.88439 -14.65458 -14.51432 -14.20523 -13.79687 -13.62188 -13.51173 -13.28674 -13.18367 -13.12064 -12.95949 -12.89745 -12.66356 -12.35813 -12.17303 -12.11292 -12.00144 -11.87804 -11.66382 -11.56374 -11.47039 -11.04501 -10.63534 -10.49500 -9.75643 -9.58150 -9.50927 -8.15577 -6.32856 0.45289 0.55912 1.44023 1.44666 1.55066 1.93648 2.36696 2.67295 2.96539 3.13754 3.71614 3.83157 3.94725 4.15738 4.21452 4.22154 4.34061 4.43887 4.46774 4.51630 4.55088 4.68570 4.72586 4.74731 4.80684 4.82501 5.00236 5.02228 5.06355 5.15178 5.21301 5.23340 5.26306 5.41043 5.42507 5.46975 5.56225 5.62191 5.65939 5.67695 5.74905 5.80175 5.95391 6.16239 6.17993 6.75850 7.05508 7.34757 7.64925 8.89720 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004919 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.031444 B = 5691.294510 C = 6301.821569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.514 3.486 15 O -0.583 6.583 16 C -0.056 4.056 17 H 0.111 0.889 18 C -0.076 4.076 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.071 4.071 25 C -0.134 4.134 26 C -0.147 4.147 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.400 0.600 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 4.299 17.310 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.356 5.356 14 C 0.301 3.699 15 O -0.464 6.464 16 C -0.078 4.078 17 H 0.129 0.871 18 C -0.076 4.076 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.090 4.090 25 C -0.191 4.191 26 C -0.204 4.204 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.120 0.880 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.574 4.225 16.441 19.018 hybrid contribution 1.071 -0.217 -0.775 1.340 sum -7.503 4.009 15.666 17.827 Atomic orbital electron populations 1.21663 0.97143 0.99028 1.00248 1.21751 0.93618 0.99375 1.00969 1.18295 0.93540 0.88890 0.81566 0.98541 1.21582 0.91517 1.38794 1.06595 0.91178 1.25764 1.03257 0.94417 0.95011 1.70050 1.37037 1.38453 1.09894 0.85394 0.79221 0.78875 0.77138 1.19680 1.21287 1.18871 1.46319 1.15737 1.56143 1.17387 1.20864 0.81406 0.77308 0.90317 1.90625 1.54628 1.59725 1.41442 1.20432 0.99710 0.94990 0.92652 0.87058 1.19407 0.95248 0.97570 0.95380 1.21095 0.95636 0.97909 0.99467 1.21337 1.00422 0.97245 0.95823 1.21464 0.97238 1.00156 0.95380 1.21453 0.94960 0.96601 1.00873 1.21319 1.00578 0.97773 0.93726 1.20923 0.97328 0.92567 0.98220 1.21755 1.01685 1.00755 0.94911 1.21844 1.00438 0.98595 0.99508 0.95705 0.93412 0.93932 0.94474 0.91145 0.92665 0.76590 0.88041 0.85195 0.83782 0.83330 0.83939 0.92334 0.91191 0.91615 0.92670 0.95591 0.91262 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.58 71.98 0.62 -5.13 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.61 2.25 44.24 0.10 14.71 16 4 H 0.00 -0.20 7.51 -2.38 -0.02 -0.22 16 5 C -0.55 -29.23 8.73 25.60 0.22 -29.00 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -53.06 11.29 21.45 0.24 -52.81 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 N -0.71 -29.69 5.02 -446.09 -2.24 -31.93 16 14 C 0.51 20.25 3.82 87.66 0.33 20.59 16 15 O -0.58 -27.64 12.85 -3.04 -0.04 -27.68 16 16 C -0.06 -1.62 1.97 -12.29 -0.02 -1.64 16 17 H 0.11 2.63 7.82 -2.39 -0.02 2.61 16 18 C -0.08 -2.04 3.43 -19.87 -0.07 -2.11 16 19 C -0.12 -3.60 8.55 22.27 0.19 -3.41 16 20 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 21 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 22 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.12 -2.53 9.67 22.27 0.22 -2.31 16 24 C -0.07 -1.90 2.01 -10.79 -0.02 -1.92 16 25 C -0.13 -2.63 8.92 71.98 0.64 -1.99 16 26 C -0.15 -3.95 9.00 71.98 0.65 -3.31 16 27 H 0.02 1.23 7.92 -2.39 -0.02 1.21 16 28 H 0.05 2.14 5.48 -2.38 -0.01 2.12 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.40 14.43 8.50 -92.71 -0.79 13.64 16 34 H 0.10 3.45 7.11 -2.91 -0.02 3.43 16 35 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.14 2.41 7.95 -2.91 -0.02 2.39 16 39 H 0.06 1.84 7.09 -2.39 -0.02 1.82 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.12 7.17 -2.38 -0.02 1.10 16 43 H 0.02 0.88 6.88 -2.38 -0.02 0.87 16 44 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -66.84 356.27 4.31 -62.53 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.18 Total: 32.87 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.14 Total: -27.39 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.00 Total: -84.74 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.84 4.31 -62.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183837064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.936 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds