Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46709 * 54.27093 * 3 2 1 5 5 C 1.50704 * 109.47191 * 174.26693 * 3 2 1 6 6 H 1.07993 * 119.99899 * 114.30589 * 5 3 2 7 7 C 1.37877 * 119.99804 * 294.31031 * 5 3 2 8 8 N 1.31515 * 120.00092 * 153.95290 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 333.94809 * 7 5 3 10 10 H 1.48495 * 109.47462 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47244 * 300.00399 * 9 7 5 12 12 H 1.48497 * 109.47273 * 60.00127 * 9 7 5 13 13 N 1.46493 * 109.47194 * 294.26752 * 3 2 1 14 14 C 1.34780 * 119.99775 * 85.00316 * 13 3 2 15 15 O 1.21273 * 120.00319 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99771 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47207 * 299.99799 * 16 14 13 18 18 C 1.53003 * 109.46815 * 59.99925 * 16 14 13 19 19 C 1.53001 * 109.47157 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47278 * 180.02562 * 19 16 14 21 21 C 1.38236 * 119.99927 * 269.73159 * 20 19 16 22 22 C 1.38234 * 119.99843 * 179.76519 * 21 20 19 23 23 C 1.38240 * 120.00095 * 0.50710 * 22 21 20 24 24 C 1.38233 * 119.99687 * 359.74663 * 23 22 21 25 25 C 1.38234 * 120.00154 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96998 * 119.99755 * 354.95732 * 8 7 5 32 32 H 0.96995 * 120.00345 * 264.99781 * 13 3 2 33 33 H 1.09001 * 109.46810 * 60.00135 * 17 16 14 34 34 H 1.08998 * 109.46910 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.47137 * 300.00137 * 17 16 14 36 36 H 1.08998 * 109.47221 * 60.00470 * 18 16 14 37 37 H 1.09007 * 109.46955 * 179.97438 * 18 16 14 38 38 H 1.08996 * 109.47134 * 299.99346 * 18 16 14 39 39 H 1.08999 * 109.47208 * 300.00622 * 19 16 14 40 40 H 1.09003 * 109.46920 * 60.00210 * 19 16 14 41 41 H 1.08001 * 119.99735 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.00108 * 180.22494 * 22 21 20 43 43 H 1.07994 * 120.00211 * 179.72040 * 23 22 21 44 44 H 1.08001 * 119.99827 * 179.97438 * 24 23 22 45 45 H 1.08009 * 120.00263 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8343 5 6 3.5403 1.4451 0.1419 6 1 4.1587 1.8024 -0.6681 7 6 4.1233 0.9912 1.3060 8 7 5.3466 0.5087 1.2840 9 14 3.1759 1.0615 2.9143 10 1 4.0186 0.5180 4.0095 11 1 2.8192 2.4708 3.2176 12 1 1.9366 0.2521 2.7946 13 7 1.6675 2.0922 -1.2591 14 6 0.4516 2.6585 -1.3913 15 8 -0.3343 2.6300 -0.4680 16 6 0.0686 3.3273 -2.6864 17 6 1.0426 4.4708 -2.9774 18 6 0.1264 2.3060 -3.8242 19 6 -1.3522 3.8834 -2.5726 20 6 -1.7354 4.5516 -3.8678 21 6 -1.4776 5.8968 -4.0542 22 6 -1.8247 6.5087 -5.2442 23 6 -2.4391 5.7776 -6.2438 24 6 -2.7016 4.4336 -6.0553 25 6 -2.3493 3.8205 -4.8675 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4392 32 1 2.2958 2.1148 -1.9976 33 1 2.0547 4.0742 -3.0586 34 1 0.7659 4.9542 -3.9143 35 1 1.0014 5.1983 -2.1668 36 1 -0.5675 1.4914 -3.6169 37 1 -0.1510 2.7896 -4.7609 38 1 1.1385 1.9096 -3.9055 39 1 -2.0458 3.0685 -2.3654 40 1 -1.3937 4.6108 -1.7619 41 1 -1.0019 6.4690 -3.2714 42 1 -1.6200 7.5589 -5.3913 43 1 -2.7144 6.2566 -7.1717 44 1 -3.1820 3.8626 -6.8360 45 1 -2.5548 2.7704 -4.7201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183861046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -55.410720 kcal Electronic energy + Delta-G solvation = -23665.858549 eV Core-core repulsion = 20453.444372 eV Total energy + Delta-G solvation = -3212.414177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48151 -40.05311 -37.40830 -36.46529 -34.48310 -33.22668 -31.85030 -31.78989 -29.08567 -28.27800 -27.61619 -24.73389 -23.95359 -23.29852 -22.31394 -21.37142 -20.57809 -19.38145 -17.68628 -17.38065 -17.27606 -16.50771 -16.03867 -15.93151 -15.72418 -15.27300 -14.80083 -14.66928 -14.44346 -14.43375 -14.23175 -13.85937 -13.70523 -13.50955 -13.42691 -13.04085 -13.00578 -12.70710 -12.65926 -12.49029 -12.29733 -12.00911 -11.91873 -11.81427 -11.74050 -11.72931 -11.56612 -11.22647 -10.48601 -10.41064 -9.76044 -9.72125 -9.52211 -8.81314 -6.40481 0.49809 0.56479 1.45390 1.47459 1.68712 1.82888 2.41358 2.49797 2.92562 2.95206 3.67465 3.81556 3.84175 4.10764 4.13346 4.21643 4.29891 4.31430 4.37322 4.40136 4.54499 4.56127 4.70286 4.72142 4.76007 4.83063 4.86377 4.92410 4.96513 5.05151 5.09084 5.19427 5.21702 5.24077 5.27482 5.29628 5.32304 5.55000 5.64785 5.69338 5.71490 5.72645 5.80957 6.03050 6.18702 6.55263 6.90337 7.27535 7.49471 8.55069 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.003760 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.857199 B = 7445.741720 C = 7633.620257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.255 3.745 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.041 0.959 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.062 2.938 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.256 1.256 13 N -0.700 5.700 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.066 4.066 17 C -0.137 4.137 18 C -0.136 4.136 19 C -0.050 4.050 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.399 0.601 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 8.460 -16.177 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.150 3.850 4 H 0.036 0.964 5 C -0.663 4.663 6 H 0.059 0.941 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.885 3.115 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.297 3.703 15 O -0.463 6.463 16 C -0.069 4.069 17 C -0.195 4.195 18 C -0.194 4.194 19 C -0.088 4.088 20 C -0.080 4.080 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.142 4.142 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.550 8.132 -13.894 22.382 hybrid contribution 0.807 0.190 -1.610 1.811 sum -14.744 8.322 -15.504 22.956 Atomic orbital electron populations 1.21762 0.95562 1.00232 1.01400 1.22109 0.95244 0.98462 1.00806 1.18688 0.93410 0.89463 0.83436 0.96369 1.22149 0.91510 1.48688 1.03935 0.94069 1.26626 0.96726 0.91299 1.04897 1.70960 1.15027 1.38867 1.30045 0.83783 0.75822 0.78226 0.73718 1.20561 1.20083 1.18089 1.46100 1.15596 1.56208 1.16925 1.21062 0.81383 0.77913 0.89955 1.90625 1.51523 1.61071 1.43090 1.20670 0.96978 0.96979 0.92311 1.21906 0.98001 0.96766 1.02808 1.21908 1.02562 0.97638 0.97254 1.20306 0.94020 0.99786 0.94688 1.19768 0.98695 0.94265 0.95312 1.21230 1.00507 0.94298 0.98386 1.21402 0.98699 1.00831 0.93388 1.21452 0.99034 0.94506 0.99811 1.21413 0.99887 0.95465 0.97469 1.21235 0.99007 1.00231 0.93713 0.92646 0.94374 0.93053 0.92868 0.93298 0.92895 0.76602 0.92191 0.89532 0.92962 0.92396 0.89614 0.92009 0.91325 0.91764 0.85968 0.84434 0.84147 0.84257 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.53 71.98 0.61 -4.60 16 2 C -0.13 -5.63 5.37 30.60 0.16 -5.47 16 3 C 0.25 12.14 1.84 44.25 0.08 12.22 16 4 H 0.02 0.96 6.12 -2.39 -0.01 0.95 16 5 C -0.63 -34.05 8.92 25.60 0.23 -33.82 16 6 H 0.04 2.37 7.96 -2.91 -0.02 2.34 16 7 C 0.01 0.43 5.15 84.65 0.44 0.86 16 8 N -0.92 -54.87 13.70 21.45 0.29 -54.58 16 9 Si 1.06 50.78 26.56 68.60 1.82 52.60 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.46 6.34 99.48 0.63 -10.83 16 13 N -0.70 -27.77 4.81 -446.09 -2.15 -29.92 16 14 C 0.51 18.67 5.08 87.66 0.45 19.12 16 15 O -0.58 -25.12 13.12 -3.01 -0.04 -25.16 16 16 C -0.07 -1.77 0.64 -52.92 -0.03 -1.81 16 17 C -0.14 -3.32 7.79 71.98 0.56 -2.76 16 18 C -0.14 -3.07 7.77 71.98 0.56 -2.51 16 19 C -0.05 -1.28 3.75 29.85 0.11 -1.17 16 20 C -0.08 -1.69 4.00 -19.87 -0.08 -1.77 16 21 C -0.13 -2.43 7.90 22.27 0.18 -2.25 16 22 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 25 C -0.12 -2.29 7.88 22.27 0.18 -2.12 16 26 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.04 1.58 7.89 -2.39 -0.02 1.56 16 28 H 0.05 1.99 5.63 -2.39 -0.01 1.97 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.27 5.77 -2.39 -0.01 2.26 16 31 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 32 H 0.40 14.43 7.36 -92.71 -0.68 13.75 16 33 H 0.06 1.46 7.56 -2.39 -0.02 1.44 16 34 H 0.09 1.76 6.19 -2.39 -0.01 1.74 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.64 6.17 -2.38 -0.01 1.62 16 38 H 0.06 1.38 7.56 -2.39 -0.02 1.36 16 39 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 40 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 41 H 0.12 2.25 8.04 -2.91 -0.02 2.23 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.13 2.14 8.03 -2.91 -0.02 2.11 16 Total: -1.00 -64.89 349.36 4.21 -60.68 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.17 Total: 27.61 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.11 Total: -31.23 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -1.85 Total: -84.50 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.82 Total: 52.60 kcal Total: -64.89 4.21 -60.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183861046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds