Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46593 * 2 1 4 4 H 1.08997 * 109.47534 * 304.90001 * 3 2 1 5 5 C 1.50699 * 109.46833 * 184.89804 * 3 2 1 6 6 H 1.07997 * 120.00295 * 245.45639 * 5 3 2 7 7 C 1.37878 * 119.99822 * 65.45792 * 5 3 2 8 8 N 1.31517 * 120.00077 * 9.46676 * 7 5 3 9 9 Si 1.86799 * 120.00237 * 189.46680 * 7 5 3 10 10 H 1.48504 * 109.47038 * 84.99529 * 9 7 5 11 11 H 1.48500 * 109.47317 * 204.99460 * 9 7 5 12 12 H 1.48494 * 109.47279 * 324.99548 * 9 7 5 13 13 N 1.46503 * 109.46908 * 64.90438 * 3 2 1 14 14 C 1.34774 * 120.00144 * 274.99610 * 13 3 2 15 15 O 1.21285 * 119.99606 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00364 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.47252 * 59.99748 * 16 14 13 18 18 C 1.53007 * 109.46976 * 299.99856 * 16 14 13 19 19 C 1.52992 * 109.47502 * 179.97438 * 16 14 13 20 20 C 1.50701 * 109.47372 * 179.97438 * 19 16 14 21 21 C 1.38235 * 120.00167 * 269.72692 * 20 19 16 22 22 C 1.38230 * 119.99959 * 179.76572 * 21 20 19 23 23 C 1.38241 * 120.00018 * 0.50867 * 22 21 20 24 24 C 1.38233 * 119.99704 * 359.74377 * 23 22 21 25 25 C 1.38226 * 120.00370 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47352 * 299.99193 * 1 2 3 27 27 H 1.09000 * 109.47561 * 59.99872 * 1 2 3 28 28 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47144 * 240.00660 * 2 1 3 30 30 H 1.08996 * 109.47249 * 119.99742 * 2 1 3 31 31 H 0.97003 * 120.00529 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00132 * 94.99583 * 13 3 2 33 33 H 1.09003 * 109.47008 * 300.00069 * 17 16 14 34 34 H 1.08993 * 109.47040 * 59.99996 * 17 16 14 35 35 H 1.09002 * 109.46884 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47020 * 179.97438 * 18 16 14 37 37 H 1.08994 * 109.46819 * 300.00051 * 18 16 14 38 38 H 1.09002 * 109.46786 * 59.99761 * 18 16 14 39 39 H 1.09005 * 109.47165 * 299.99950 * 19 16 14 40 40 H 1.09006 * 109.47058 * 59.99936 * 19 16 14 41 41 H 1.08007 * 119.99730 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.00179 * 180.23174 * 22 21 20 43 43 H 1.07999 * 119.99853 * 179.72245 * 23 22 21 44 44 H 1.07998 * 119.99780 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00492 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5419 1.4444 -0.1213 6 1 4.1491 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4095 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3289 -0.6064 -0.7837 11 1 6.4617 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6502 2.0982 1.2509 14 6 0.4327 2.6651 1.3638 15 8 -0.3401 2.6329 0.4296 16 6 0.0321 3.3400 2.6502 17 6 1.0021 4.4849 2.9491 18 6 0.0743 2.3242 3.7937 19 6 -1.3864 3.8966 2.5140 20 6 -1.7873 4.5709 3.8007 21 6 -2.4212 3.8462 4.7926 22 6 -2.7845 4.4637 5.9748 23 6 -2.5233 5.8084 6.1609 24 6 -1.8941 6.5342 5.1669 25 6 -1.5265 5.9157 3.9867 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8309 0.3849 -3.1429 32 1 2.2685 2.1243 1.9979 33 1 2.0130 4.0887 3.0461 34 1 0.9721 5.2085 2.1346 35 1 0.7125 4.9727 3.8799 36 1 -0.2150 2.8124 4.7243 37 1 -0.6167 1.5086 3.5807 38 1 1.0852 1.9280 3.8906 39 1 -1.4161 4.6204 1.6995 40 1 -2.0778 3.0812 2.3009 41 1 -2.6296 2.7967 4.6452 42 1 -3.2764 3.8966 6.7512 43 1 -2.8112 6.2918 7.0828 44 1 -1.6904 7.5848 5.3122 45 1 -1.0353 6.4829 3.2099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183861059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -39.440149 kcal Electronic energy + Delta-G solvation = -23583.892041 eV Core-core repulsion = 20372.170401 eV Total energy + Delta-G solvation = -3211.721641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13533 -38.87480 -35.82842 -34.76522 -32.40285 -31.47050 -31.02243 -30.47669 -27.21418 -26.98986 -26.54053 -23.43694 -22.52695 -22.51856 -21.07866 -19.60296 -18.78101 -16.88070 -16.66771 -15.73008 -15.51988 -15.27948 -14.99045 -14.63234 -14.51976 -13.73402 -13.54378 -13.48193 -13.18361 -12.86337 -12.68337 -12.55247 -12.12779 -11.90478 -11.79685 -11.65115 -11.43732 -11.33673 -11.01859 -10.98004 -10.94884 -10.82404 -10.77253 -10.66677 -10.31899 -10.17297 -9.66861 -9.08634 -8.95656 -8.80423 -8.64720 -8.46104 -7.77954 -6.13467 -4.18628 1.30359 1.33636 3.25242 3.32169 3.33280 3.48451 3.70380 4.13019 4.38901 4.80145 4.85336 4.92546 4.98670 5.05697 5.11107 5.19636 5.23137 5.45322 5.46248 5.62388 5.74352 5.80797 5.85770 5.92001 5.96099 6.04749 6.10741 6.23175 6.35094 6.36237 6.37936 6.41330 6.43773 6.44038 6.61752 6.67486 6.95620 7.00523 7.18736 7.34761 7.46857 7.63855 7.73760 7.87335 8.10128 8.73649 8.82038 9.20472 9.47762 10.94667 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003632 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.811205 B = 7706.373753 C = 8114.828228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.511 3.489 15 O -0.550 6.550 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.058 4.058 20 C -0.067 4.067 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 7.338 15.776 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.296 3.704 15 O -0.429 6.429 16 C -0.081 4.081 17 C -0.199 4.199 18 C -0.198 4.198 19 C -0.096 4.096 20 C -0.067 4.067 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.388 7.228 14.865 19.010 hybrid contribution 1.361 -0.211 0.291 1.407 sum -8.028 7.017 15.156 18.531 Atomic orbital electron populations 1.21839 0.98066 0.98054 1.01533 1.21841 0.92955 0.99980 1.01051 1.18767 0.94218 0.88849 0.81488 0.92702 1.21183 0.90683 1.43907 1.01717 0.92184 1.24882 0.98368 0.95202 0.95011 1.69985 1.35706 1.43809 1.02136 0.86554 0.85152 0.78707 0.77241 1.20447 1.21200 1.19929 1.46452 1.14677 1.55852 1.18276 1.20171 0.82688 0.79042 0.88515 1.90659 1.51671 1.60099 1.40427 1.20723 0.96030 0.96478 0.94830 1.21918 0.98535 0.97426 1.01971 1.21914 1.02442 0.98190 0.97253 1.20444 0.94987 1.00391 0.93757 1.19964 0.96899 0.93811 0.96056 1.21112 0.98860 0.99884 0.93502 1.21119 1.00366 0.94992 0.97488 1.21090 1.00125 0.94549 0.99099 1.21121 0.99101 0.99727 0.93991 1.21124 1.00038 0.94478 0.97681 0.93961 0.93009 0.95900 0.90352 0.94805 0.92592 0.78120 0.92027 0.92203 0.91678 0.91634 0.92312 0.92107 0.90242 0.90308 0.86088 0.86381 0.86536 0.86364 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.12 -2.85 5.50 -26.73 -0.15 -2.99 16 3 C 0.27 6.69 2.11 -69.08 -0.15 6.54 16 4 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 5 C -0.54 -14.10 8.66 -34.44 -0.30 -14.40 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.88 12.16 55.43 0.67 -24.21 16 9 Si 0.90 20.59 29.55 -169.99 -5.02 15.56 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.34 4.81 -54.93 -0.26 -14.60 16 14 C 0.51 9.82 5.04 -10.99 -0.06 9.76 16 15 O -0.55 -12.51 13.12 5.55 0.07 -12.44 16 16 C -0.08 -1.10 0.64 -155.66 -0.10 -1.20 16 17 C -0.14 -1.82 7.78 37.16 0.29 -1.53 16 18 C -0.14 -1.76 7.79 37.16 0.29 -1.47 16 19 C -0.06 -0.79 3.75 -27.89 -0.10 -0.90 16 20 C -0.07 -0.78 4.00 -104.62 -0.42 -1.20 16 21 C -0.12 -1.24 7.90 -39.59 -0.31 -1.55 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 25 C -0.12 -1.25 7.89 -39.58 -0.31 -1.56 16 26 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 27 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 2.06 6.80 -51.93 -0.35 1.71 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 6.97 7.36 -40.82 -0.30 6.67 16 33 H 0.06 0.78 7.57 -51.93 -0.39 0.39 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.74 6.18 -51.93 -0.32 0.42 16 36 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 39 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 40 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 41 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.23 8.03 -52.49 -0.42 0.81 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -29.67 353.43 -8.85 -38.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.35 Total: 8.02 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.28 Total: -16.18 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.41 Total: -38.81 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.67 -8.85 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183861059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.921 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds