Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46593 * 2 1 4 4 H 1.08997 * 109.47534 * 304.90001 * 3 2 1 5 5 C 1.50699 * 109.46833 * 184.89804 * 3 2 1 6 6 H 1.07997 * 120.00295 * 245.45639 * 5 3 2 7 7 C 1.37878 * 119.99822 * 65.45792 * 5 3 2 8 8 N 1.31517 * 120.00077 * 9.46676 * 7 5 3 9 9 Si 1.86799 * 120.00237 * 189.46680 * 7 5 3 10 10 H 1.48504 * 109.47038 * 84.99529 * 9 7 5 11 11 H 1.48500 * 109.47317 * 204.99460 * 9 7 5 12 12 H 1.48494 * 109.47279 * 324.99548 * 9 7 5 13 13 N 1.46503 * 109.46908 * 64.90438 * 3 2 1 14 14 C 1.34774 * 120.00144 * 274.99610 * 13 3 2 15 15 O 1.21285 * 119.99606 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00364 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.47252 * 59.99748 * 16 14 13 18 18 C 1.53007 * 109.46976 * 299.99856 * 16 14 13 19 19 C 1.52992 * 109.47502 * 179.97438 * 16 14 13 20 20 C 1.50701 * 109.47372 * 179.97438 * 19 16 14 21 21 C 1.38235 * 120.00167 * 269.72692 * 20 19 16 22 22 C 1.38230 * 119.99959 * 179.76572 * 21 20 19 23 23 C 1.38241 * 120.00018 * 0.50867 * 22 21 20 24 24 C 1.38233 * 119.99704 * 359.74377 * 23 22 21 25 25 C 1.38226 * 120.00370 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47352 * 299.99193 * 1 2 3 27 27 H 1.09000 * 109.47561 * 59.99872 * 1 2 3 28 28 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47144 * 240.00660 * 2 1 3 30 30 H 1.08996 * 109.47249 * 119.99742 * 2 1 3 31 31 H 0.97003 * 120.00529 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00132 * 94.99583 * 13 3 2 33 33 H 1.09003 * 109.47008 * 300.00069 * 17 16 14 34 34 H 1.08993 * 109.47040 * 59.99996 * 17 16 14 35 35 H 1.09002 * 109.46884 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47020 * 179.97438 * 18 16 14 37 37 H 1.08994 * 109.46819 * 300.00051 * 18 16 14 38 38 H 1.09002 * 109.46786 * 59.99761 * 18 16 14 39 39 H 1.09005 * 109.47165 * 299.99950 * 19 16 14 40 40 H 1.09006 * 109.47058 * 59.99936 * 19 16 14 41 41 H 1.08007 * 119.99730 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.00179 * 180.23174 * 22 21 20 43 43 H 1.07999 * 119.99853 * 179.72245 * 23 22 21 44 44 H 1.07998 * 119.99780 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00492 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5419 1.4444 -0.1213 6 1 4.1491 1.8092 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4095 0.7117 -2.3326 9 14 5.9918 0.7331 -1.3290 10 1 6.3289 -0.6064 -0.7837 11 1 6.4617 0.8279 -2.7345 12 1 6.6560 1.7812 -0.5133 13 7 1.6502 2.0982 1.2509 14 6 0.4327 2.6651 1.3638 15 8 -0.3401 2.6329 0.4296 16 6 0.0321 3.3400 2.6502 17 6 1.0021 4.4849 2.9491 18 6 0.0743 2.3242 3.7937 19 6 -1.3864 3.8966 2.5140 20 6 -1.7873 4.5709 3.8007 21 6 -2.4212 3.8462 4.7926 22 6 -2.7845 4.4637 5.9748 23 6 -2.5233 5.8084 6.1609 24 6 -1.8941 6.5342 5.1669 25 6 -1.5265 5.9157 3.9867 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8309 0.3849 -3.1429 32 1 2.2685 2.1243 1.9979 33 1 2.0130 4.0887 3.0461 34 1 0.9721 5.2085 2.1346 35 1 0.7125 4.9727 3.8799 36 1 -0.2150 2.8124 4.7243 37 1 -0.6167 1.5086 3.5807 38 1 1.0852 1.9280 3.8906 39 1 -1.4161 4.6204 1.6995 40 1 -2.0778 3.0812 2.3009 41 1 -2.6296 2.7967 4.6452 42 1 -3.2764 3.8966 6.7512 43 1 -2.8112 6.2918 7.0828 44 1 -1.6904 7.5848 5.3122 45 1 -1.0353 6.4829 3.2099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183861059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -55.281769 kcal Electronic energy + Delta-G solvation = -23584.578986 eV Core-core repulsion = 20372.170401 eV Total energy + Delta-G solvation = -3212.408585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40280 -40.00161 -37.27982 -36.39405 -34.27725 -32.99142 -31.79194 -31.77159 -28.91321 -28.22539 -27.58720 -25.24575 -23.97300 -23.27765 -22.24654 -21.35151 -20.30364 -18.54573 -17.51643 -17.30650 -17.17720 -16.40406 -16.29012 -15.93265 -15.87148 -15.23435 -14.75154 -14.59055 -14.53326 -14.20673 -13.75096 -13.68692 -13.49726 -13.37553 -13.25558 -13.00134 -12.94398 -12.88689 -12.67020 -12.60876 -12.18673 -12.09433 -11.96794 -11.87964 -11.74700 -11.71283 -11.59676 -11.08320 -10.54476 -10.35153 -9.71251 -9.58439 -9.50002 -8.18930 -6.31867 0.51771 0.58307 1.44049 1.45080 1.54477 1.92765 2.36947 2.65652 2.97862 3.12572 3.75454 3.85749 3.87712 4.14144 4.16239 4.24353 4.36913 4.39311 4.46206 4.53401 4.57353 4.71992 4.72571 4.77645 4.81041 4.86863 4.95206 4.99540 5.06620 5.08685 5.22961 5.24527 5.24816 5.32213 5.34132 5.42739 5.54955 5.63837 5.66733 5.70966 5.75881 5.83316 5.95368 6.09209 6.20541 6.77585 7.04806 7.34740 7.64302 8.89640 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.003632 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.811205 B = 7706.373753 C = 8114.828228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.590 6.590 16 C -0.066 4.066 17 C -0.136 4.136 18 C -0.135 4.135 19 C -0.051 4.051 20 C -0.080 4.080 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.126 4.126 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 7.846 19.029 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.173 3.827 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.471 6.471 16 C -0.069 4.069 17 C -0.194 4.194 18 C -0.192 4.192 19 C -0.089 4.089 20 C -0.080 4.080 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.144 4.144 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.905 7.749 18.163 21.663 hybrid contribution 1.122 -0.304 -0.714 1.364 sum -7.783 7.444 17.450 20.506 Atomic orbital electron populations 1.21676 0.96716 0.99256 1.00448 1.21691 0.94063 0.99109 1.00229 1.18341 0.93590 0.89000 0.81735 0.98184 1.21547 0.91457 1.43627 1.02062 0.91090 1.25767 1.03100 0.94849 0.94588 1.70138 1.37755 1.44820 1.02765 0.85456 0.79360 0.79050 0.77078 1.19569 1.21470 1.18781 1.46230 1.15608 1.55943 1.17238 1.21086 0.81587 0.78106 0.89826 1.90642 1.52682 1.61338 1.42434 1.20670 0.96741 0.97070 0.92455 1.21903 0.98248 0.96609 1.02600 1.21899 1.02785 0.97553 0.97009 1.20298 0.94295 0.99565 0.94723 1.19761 0.98598 0.94323 0.95288 1.21225 0.98938 1.00224 0.93823 1.21409 0.99879 0.95453 0.97404 1.21453 0.99006 0.94481 0.99813 1.21394 0.98585 1.00823 0.93428 1.21219 1.00532 0.94200 0.98468 0.93365 0.95730 0.93411 0.93204 0.93321 0.92686 0.76501 0.91649 0.93270 0.89507 0.89592 0.92732 0.91529 0.92141 0.91726 0.85721 0.84208 0.84058 0.84367 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.11 -5.45 5.50 30.59 0.17 -5.29 16 3 C 0.28 14.23 2.11 44.25 0.09 14.32 16 4 H 0.00 0.01 7.52 -2.39 -0.02 0.00 16 5 C -0.55 -29.11 8.66 25.60 0.22 -28.89 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.94 5.16 84.65 0.44 1.38 16 8 N -0.92 -53.52 12.16 21.45 0.26 -53.25 16 9 Si 0.97 42.23 29.55 68.60 2.03 44.25 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 13 N -0.70 -28.85 4.81 -446.09 -2.14 -30.99 16 14 C 0.51 19.89 5.04 87.66 0.44 20.33 16 15 O -0.59 -28.16 13.12 -3.04 -0.04 -28.20 16 16 C -0.07 -1.86 0.64 -52.93 -0.03 -1.90 16 17 C -0.14 -3.35 7.78 71.98 0.56 -2.79 16 18 C -0.14 -3.14 7.79 71.98 0.56 -2.58 16 19 C -0.05 -1.41 3.75 29.85 0.11 -1.30 16 20 C -0.08 -1.77 4.00 -19.86 -0.08 -1.85 16 21 C -0.12 -2.42 7.90 22.27 0.18 -2.24 16 22 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.13 -2.54 7.89 22.27 0.18 -2.36 16 26 H 0.05 2.07 5.65 -2.39 -0.01 2.06 16 27 H 0.02 1.19 7.84 -2.39 -0.02 1.18 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 2.71 6.80 -2.39 -0.02 2.69 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.40 14.14 7.36 -92.71 -0.68 13.46 16 33 H 0.06 1.55 7.57 -2.39 -0.02 1.53 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.78 6.18 -2.39 -0.01 1.77 16 36 H 0.09 1.68 6.19 -2.39 -0.01 1.66 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 39 H 0.06 1.86 8.04 -2.38 -0.02 1.84 16 40 H 0.06 1.93 8.04 -2.38 -0.02 1.91 16 41 H 0.12 2.27 8.04 -2.91 -0.02 2.24 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.12 2.36 8.03 -2.91 -0.02 2.34 16 Total: -1.00 -66.32 353.43 4.50 -61.82 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.28 Total: 29.76 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.12 Total: -23.39 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.88 Total: -84.24 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.04 Total: -28.20 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -66.32 4.50 -61.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183861059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.540 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds