Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47171 * 2 1 4 4 H 1.08999 * 109.47111 * 53.78736 * 3 2 1 5 5 C 1.50706 * 109.47207 * 173.78556 * 3 2 1 6 6 H 1.08000 * 120.00261 * 119.99791 * 5 3 2 7 7 C 1.37878 * 119.99620 * 300.00472 * 5 3 2 8 8 N 1.31516 * 120.00602 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99823 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47406 * 89.99618 * 9 7 5 11 11 H 1.48499 * 109.46984 * 209.99892 * 9 7 5 12 12 H 1.48502 * 109.47034 * 329.99455 * 9 7 5 13 13 N 1.46498 * 109.47523 * 293.78460 * 3 2 1 14 14 C 1.34772 * 120.00128 * 104.80401 * 13 3 2 15 15 O 1.21284 * 120.00025 * 4.42305 * 14 13 3 16 16 C 1.50696 * 120.00357 * 184.41730 * 14 13 3 17 17 C 1.53003 * 109.46920 * 57.19718 * 16 14 13 18 18 C 1.53000 * 109.47386 * 297.20258 * 16 14 13 19 19 C 1.50699 * 109.47188 * 177.19564 * 16 14 13 20 20 C 1.38265 * 119.99590 * 118.29155 * 19 16 14 21 21 C 1.38211 * 119.99595 * 180.27510 * 20 19 16 22 22 C 1.38265 * 120.00229 * 359.74325 * 21 20 19 23 23 C 1.38215 * 119.99739 * 359.97438 * 22 21 20 24 24 C 1.38213 * 120.00233 * 298.02913 * 19 16 14 25 25 C 1.50697 * 120.00077 * 0.02562 * 24 19 16 26 26 H 1.09000 * 109.46980 * 305.77175 * 1 2 3 27 27 H 1.09004 * 109.47268 * 65.76776 * 1 2 3 28 28 H 1.09003 * 109.47636 * 185.77174 * 1 2 3 29 29 H 1.09006 * 109.47205 * 240.00129 * 2 1 3 30 30 H 1.08998 * 109.46844 * 120.00659 * 2 1 3 31 31 H 0.96997 * 120.00537 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99941 * 284.80885 * 13 3 2 33 33 H 1.09004 * 109.47362 * 182.69529 * 17 16 14 34 34 H 1.08998 * 109.47401 * 302.69630 * 17 16 14 35 35 H 1.09005 * 109.47054 * 62.69669 * 17 16 14 36 36 H 1.09000 * 109.46675 * 299.99713 * 18 16 14 37 37 H 1.09002 * 109.47109 * 59.99552 * 18 16 14 38 38 H 1.08994 * 109.47321 * 179.97438 * 18 16 14 39 39 H 1.07992 * 120.00242 * 0.03833 * 20 19 16 40 40 H 1.07997 * 119.99859 * 179.76432 * 21 20 19 41 41 H 1.07994 * 119.99833 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00085 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47340 * 264.65241 * 25 24 19 44 44 H 1.08999 * 109.47510 * 144.65257 * 25 24 19 45 45 H 1.09007 * 109.47042 * 24.64996 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5887 1.9874 0.8291 5 6 3.5391 1.4452 0.1538 6 1 4.1599 1.8843 -0.6132 7 6 4.1182 0.8871 1.2737 8 7 3.3624 0.3527 2.2079 9 14 5.9764 0.8911 1.4647 10 1 6.3991 2.1289 2.1677 11 1 6.3954 -0.2944 2.2547 12 1 6.6120 0.8420 0.1235 13 7 1.6776 2.0886 -1.2639 14 6 0.6689 2.9817 -1.2992 15 8 0.1140 3.3107 -0.2721 16 6 0.2306 3.5718 -2.6147 17 6 -0.1693 2.4460 -3.5706 18 6 1.3832 4.3726 -3.2239 19 6 -0.9492 4.4818 -2.3889 20 6 -0.8532 5.8268 -2.6945 21 6 -1.9334 6.6624 -2.4820 22 6 -3.1117 6.1524 -1.9689 23 6 -3.2095 4.8068 -1.6689 24 6 -2.1289 3.9708 -1.8814 25 6 -2.2353 2.5039 -1.5533 26 1 -0.3633 0.6007 0.8338 27 1 -0.3634 0.4218 -0.9371 28 1 -0.3634 -1.0224 0.1033 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 3.7697 -0.0396 2.9960 32 1 2.1636 1.8735 -2.0754 33 1 -0.4407 2.8695 -4.5376 34 1 0.6693 1.7611 -3.6964 35 1 -1.0215 1.9052 -3.1587 36 1 1.6681 5.1746 -2.5429 37 1 2.2365 3.7143 -3.3872 38 1 1.0663 4.7989 -4.1756 39 1 0.0669 6.2251 -3.0956 40 1 -1.8572 7.7138 -2.7172 41 1 -3.9558 6.8054 -1.8033 42 1 -4.1299 4.4083 -1.2685 43 1 -2.6786 1.9742 -2.3965 44 1 -2.8627 2.3732 -0.6716 45 1 -1.2412 2.1030 -1.3545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183865155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = -23.775775 kcal Electronic energy + Delta-G solvation = -24358.246412 eV Core-core repulsion = 21147.204029 eV Total energy + Delta-G solvation = -3211.042383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55904 -38.32253 -35.38517 -34.75444 -32.71085 -32.24343 -30.92839 -29.49097 -27.65487 -26.89762 -26.32811 -23.89983 -22.99834 -21.48600 -21.13869 -19.69193 -18.93857 -17.13074 -16.21303 -15.98055 -15.32579 -15.17238 -14.69738 -14.26331 -14.21932 -13.89858 -13.49763 -13.44817 -12.88469 -12.84100 -12.55314 -12.13307 -12.04602 -11.95578 -11.82311 -11.69838 -11.60137 -11.43936 -11.28496 -11.07946 -10.93635 -10.82385 -10.64096 -10.37239 -10.26402 -9.96815 -9.72706 -9.18509 -8.88210 -8.56315 -8.41702 -8.30263 -7.79484 -6.08998 -4.17648 1.56877 1.61616 3.26026 3.32835 3.34058 3.44761 3.86915 4.23230 4.43181 4.68431 4.95129 5.10313 5.14366 5.20949 5.21909 5.26908 5.45524 5.52874 5.63688 5.71485 5.79747 5.84420 5.88456 5.95255 5.98022 6.12163 6.14999 6.23061 6.26911 6.28542 6.34473 6.49907 6.57388 6.67817 6.68986 6.90884 6.95652 7.12172 7.22874 7.27906 7.46818 7.62334 7.72707 7.99061 8.20077 8.68783 8.82999 9.18082 9.49824 10.95870 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.004660 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.396313 B = 6006.911300 C = 6402.570308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.264 3.736 4 H 0.060 0.940 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.541 6.541 16 C -0.049 4.049 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.051 4.051 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.049 4.049 25 C -0.129 4.129 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.102 0.898 31 H 0.263 0.737 32 H 0.386 0.614 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 5.920 -12.211 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.162 3.838 4 H 0.078 0.922 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.300 3.700 15 O -0.419 6.419 16 C -0.052 4.052 17 C -0.209 4.209 18 C -0.198 4.198 19 C -0.051 4.051 20 C -0.133 4.133 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.049 4.049 25 C -0.185 4.185 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.552 6.016 -11.255 15.941 hybrid contribution 1.255 -0.033 -0.158 1.265 sum -8.297 5.983 -11.413 15.327 Atomic orbital electron populations 1.21822 0.98967 0.99043 1.00161 1.21930 0.92185 1.00078 1.02524 1.18853 0.94515 0.89076 0.81318 0.92198 1.21320 0.91186 1.38756 1.05661 0.92272 1.24882 0.98344 0.94937 0.95520 1.69876 1.34896 1.38286 1.09169 0.86502 0.85167 0.77604 0.78144 1.20643 1.21131 1.19917 1.46387 1.33189 1.42180 1.13645 1.19980 0.80712 0.79682 0.89610 1.90691 1.55802 1.60656 1.34737 1.19783 0.94359 0.95732 0.95324 1.22169 1.02965 0.97238 0.98511 1.21912 0.96872 1.00388 1.00639 1.19243 0.93463 0.93495 0.98934 1.21100 0.98738 0.92920 1.00531 1.20999 0.93653 0.99252 1.01150 1.21031 0.97778 0.95295 1.00021 1.20958 0.98324 0.93646 1.01405 1.19639 0.92767 0.96301 0.96218 1.21264 1.04576 0.92110 1.00529 0.93295 0.94806 0.94979 0.94884 0.88029 0.92659 0.78216 0.91915 0.91663 0.90681 0.91756 0.91587 0.91648 0.85853 0.86554 0.86624 0.86479 0.91938 0.91848 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.57 37.16 0.36 -2.55 16 2 C -0.13 -2.96 5.45 -26.74 -0.15 -3.10 16 3 C 0.26 6.48 2.26 -69.08 -0.16 6.32 16 4 H 0.06 1.74 7.01 -51.93 -0.36 1.37 16 5 C -0.53 -13.97 8.82 -34.44 -0.30 -14.28 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -14.18 4.36 -54.94 -0.24 -14.42 16 14 C 0.52 10.04 4.05 -10.99 -0.04 10.00 16 15 O -0.54 -12.69 13.54 5.55 0.08 -12.62 16 16 C -0.05 -0.73 0.61 -156.81 -0.09 -0.82 16 17 C -0.15 -1.92 8.06 37.16 0.30 -1.62 16 18 C -0.14 -1.80 7.05 37.16 0.26 -1.54 16 19 C -0.05 -0.79 4.32 -104.62 -0.45 -1.24 16 20 C -0.11 -1.61 8.98 -39.58 -0.36 -1.96 16 21 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.13 -1.75 9.72 -39.58 -0.38 -2.14 16 24 C -0.05 -0.77 5.18 -104.63 -0.54 -1.31 16 25 C -0.13 -1.97 7.53 36.00 0.27 -1.70 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.63 5.85 -51.93 -0.30 0.33 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.64 5.93 -51.93 -0.31 2.33 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.78 7.62 -40.82 -0.31 6.47 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.77 7.43 -51.93 -0.39 0.38 16 35 H 0.07 0.98 4.37 -51.93 -0.23 0.75 16 36 H 0.06 0.88 7.43 -51.93 -0.39 0.50 16 37 H 0.07 0.80 7.64 -51.93 -0.40 0.40 16 38 H 0.06 0.68 7.59 -51.93 -0.39 0.29 16 39 H 0.12 1.49 5.90 -52.49 -0.31 1.18 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.06 0.80 7.31 -51.93 -0.38 0.42 16 44 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 45 H 0.09 1.56 1.99 -51.92 -0.10 1.46 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -30.20 344.06 -8.35 -38.55 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.79 Total: 9.97 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.18 Total: -18.34 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.45 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.20 -8.35 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.774 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds