Wall clock time and date at job start Tue Mar 31 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47171 * 2 1 4 4 H 1.08999 * 109.47111 * 53.78736 * 3 2 1 5 5 C 1.50706 * 109.47207 * 173.78556 * 3 2 1 6 6 H 1.08000 * 120.00261 * 119.99791 * 5 3 2 7 7 C 1.37878 * 119.99620 * 300.00472 * 5 3 2 8 8 N 1.31516 * 120.00602 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99823 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47406 * 89.99618 * 9 7 5 11 11 H 1.48499 * 109.46984 * 209.99892 * 9 7 5 12 12 H 1.48502 * 109.47034 * 329.99455 * 9 7 5 13 13 N 1.46498 * 109.47523 * 293.78460 * 3 2 1 14 14 C 1.34772 * 120.00128 * 104.80401 * 13 3 2 15 15 O 1.21284 * 120.00025 * 4.42305 * 14 13 3 16 16 C 1.50696 * 120.00357 * 184.41730 * 14 13 3 17 17 C 1.53003 * 109.46920 * 57.19718 * 16 14 13 18 18 C 1.53000 * 109.47386 * 297.20258 * 16 14 13 19 19 C 1.50699 * 109.47188 * 177.19564 * 16 14 13 20 20 C 1.38265 * 119.99590 * 118.29155 * 19 16 14 21 21 C 1.38211 * 119.99595 * 180.27510 * 20 19 16 22 22 C 1.38265 * 120.00229 * 359.74325 * 21 20 19 23 23 C 1.38215 * 119.99739 * 359.97438 * 22 21 20 24 24 C 1.38213 * 120.00233 * 298.02913 * 19 16 14 25 25 C 1.50697 * 120.00077 * 0.02562 * 24 19 16 26 26 H 1.09000 * 109.46980 * 305.77175 * 1 2 3 27 27 H 1.09004 * 109.47268 * 65.76776 * 1 2 3 28 28 H 1.09003 * 109.47636 * 185.77174 * 1 2 3 29 29 H 1.09006 * 109.47205 * 240.00129 * 2 1 3 30 30 H 1.08998 * 109.46844 * 120.00659 * 2 1 3 31 31 H 0.96997 * 120.00537 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99941 * 284.80885 * 13 3 2 33 33 H 1.09004 * 109.47362 * 182.69529 * 17 16 14 34 34 H 1.08998 * 109.47401 * 302.69630 * 17 16 14 35 35 H 1.09005 * 109.47054 * 62.69669 * 17 16 14 36 36 H 1.09000 * 109.46675 * 299.99713 * 18 16 14 37 37 H 1.09002 * 109.47109 * 59.99552 * 18 16 14 38 38 H 1.08994 * 109.47321 * 179.97438 * 18 16 14 39 39 H 1.07992 * 120.00242 * 0.03833 * 20 19 16 40 40 H 1.07997 * 119.99859 * 179.76432 * 21 20 19 41 41 H 1.07994 * 119.99833 * 180.02562 * 22 21 20 42 42 H 1.07995 * 120.00085 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47340 * 264.65241 * 25 24 19 44 44 H 1.08999 * 109.47510 * 144.65257 * 25 24 19 45 45 H 1.09007 * 109.47042 * 24.64996 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5887 1.9874 0.8291 5 6 3.5391 1.4452 0.1538 6 1 4.1599 1.8843 -0.6132 7 6 4.1182 0.8871 1.2737 8 7 3.3624 0.3527 2.2079 9 14 5.9764 0.8911 1.4647 10 1 6.3991 2.1289 2.1677 11 1 6.3954 -0.2944 2.2547 12 1 6.6120 0.8420 0.1235 13 7 1.6776 2.0886 -1.2639 14 6 0.6689 2.9817 -1.2992 15 8 0.1140 3.3107 -0.2721 16 6 0.2306 3.5718 -2.6147 17 6 -0.1693 2.4460 -3.5706 18 6 1.3832 4.3726 -3.2239 19 6 -0.9492 4.4818 -2.3889 20 6 -0.8532 5.8268 -2.6945 21 6 -1.9334 6.6624 -2.4820 22 6 -3.1117 6.1524 -1.9689 23 6 -3.2095 4.8068 -1.6689 24 6 -2.1289 3.9708 -1.8814 25 6 -2.2353 2.5039 -1.5533 26 1 -0.3633 0.6007 0.8338 27 1 -0.3634 0.4218 -0.9371 28 1 -0.3634 -1.0224 0.1033 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 3.7697 -0.0396 2.9960 32 1 2.1636 1.8735 -2.0754 33 1 -0.4407 2.8695 -4.5376 34 1 0.6693 1.7611 -3.6964 35 1 -1.0215 1.9052 -3.1587 36 1 1.6681 5.1746 -2.5429 37 1 2.2365 3.7143 -3.3872 38 1 1.0663 4.7989 -4.1756 39 1 0.0669 6.2251 -3.0956 40 1 -1.8572 7.7138 -2.7172 41 1 -3.9558 6.8054 -1.8033 42 1 -4.1299 4.4083 -1.2685 43 1 -2.6786 1.9742 -2.3965 44 1 -2.8627 2.3732 -0.6716 45 1 -1.2412 2.1030 -1.3545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183865155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:56 Heat of formation + Delta-G solvation = -40.494350 kcal Electronic energy + Delta-G solvation = -24358.971384 eV Core-core repulsion = 21147.204029 eV Total energy + Delta-G solvation = -3211.767354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83567 -39.66296 -37.05979 -36.12681 -34.24345 -33.73167 -32.61756 -30.61166 -28.91101 -28.55303 -27.41429 -25.41309 -24.54978 -22.86477 -22.22644 -21.44167 -20.40115 -18.72756 -17.67748 -17.41242 -16.92509 -16.50524 -16.18298 -15.67746 -15.47913 -15.05685 -14.97694 -14.65757 -14.60599 -14.18565 -13.82250 -13.49411 -13.27311 -13.21014 -13.14755 -12.98928 -12.97735 -12.92157 -12.75537 -12.67093 -12.60239 -12.13035 -12.07807 -11.91127 -11.67079 -11.59296 -11.31958 -11.13128 -10.57461 -10.33214 -9.62937 -9.56199 -9.37431 -8.13095 -6.29808 0.51435 0.57274 1.42933 1.43916 1.53793 1.93817 2.37773 2.63852 3.02370 3.15518 3.58182 3.85926 4.03286 4.14933 4.15204 4.19733 4.29880 4.42388 4.49093 4.56570 4.65724 4.71164 4.73877 4.75666 4.82795 4.86666 4.91872 4.92960 5.02815 5.10086 5.16184 5.23983 5.29055 5.30660 5.40414 5.43803 5.58174 5.64948 5.67465 5.69837 5.80482 5.85785 6.06046 6.21405 6.22244 6.79792 7.04140 7.37166 7.66987 8.90897 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.004660 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.396313 B = 6006.911300 C = 6402.570308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.274 3.726 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.064 0.936 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.283 1.283 12 H -0.261 1.261 13 N -0.702 5.702 14 C 0.515 3.485 15 O -0.586 6.586 16 C -0.039 4.039 17 C -0.149 4.149 18 C -0.140 4.140 19 C -0.074 4.074 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.073 4.073 25 C -0.125 4.125 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.400 0.600 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 6.788 -14.672 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.170 3.830 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.209 1.209 11 H -0.208 1.208 12 H -0.185 1.185 13 N -0.351 5.351 14 C 0.302 3.698 15 O -0.467 6.467 16 C -0.043 4.043 17 C -0.206 4.206 18 C -0.197 4.197 19 C -0.074 4.074 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.158 4.158 24 C -0.073 4.073 25 C -0.181 4.181 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.235 0.765 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.426 6.885 -13.763 18.046 hybrid contribution 1.144 -0.234 0.640 1.332 sum -8.282 6.651 -13.123 16.883 Atomic orbital electron populations 1.21667 0.97055 1.00025 0.99891 1.21751 0.93833 0.98843 1.01591 1.18394 0.93451 0.89408 0.81700 0.97656 1.21676 0.92232 1.38590 1.05950 0.91746 1.25710 1.02791 0.94602 0.95240 1.70031 1.36709 1.38999 1.09608 0.85477 0.79820 0.77295 0.78534 1.20897 1.20818 1.18477 1.46142 1.33889 1.42402 1.12655 1.20814 0.79419 0.78568 0.90986 1.90667 1.57013 1.61936 1.37085 1.19744 0.95120 0.96559 0.92838 1.22183 1.03013 0.96570 0.98874 1.21952 0.96242 0.99914 1.01574 1.19426 0.93479 0.94404 1.00137 1.21395 0.99911 0.92465 1.00507 1.21399 0.93158 1.00588 1.00170 1.21412 0.98810 0.95106 0.98926 1.21232 0.98554 0.94377 1.01589 1.19829 0.93711 0.96519 0.97277 1.21203 1.03100 0.92777 1.01064 0.95982 0.93189 0.92701 0.93493 0.91069 0.92752 0.76526 0.89435 0.90877 0.91352 0.93072 0.90926 0.88530 0.84214 0.83721 0.83870 0.85219 0.89692 0.92773 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 9.57 71.98 0.69 -4.67 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.55 16 3 C 0.27 13.89 2.26 44.25 0.10 13.99 16 4 H 0.01 0.34 7.01 -2.39 -0.02 0.32 16 5 C -0.55 -29.18 8.82 25.60 0.23 -28.96 16 6 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.58 11.29 21.45 0.24 -52.34 16 9 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -28.44 4.36 -446.11 -1.94 -30.38 16 14 C 0.52 20.30 4.05 87.66 0.35 20.65 16 15 O -0.59 -28.69 13.54 -3.04 -0.04 -28.73 16 16 C -0.04 -1.14 0.61 -53.67 -0.03 -1.17 16 17 C -0.15 -3.45 8.06 71.98 0.58 -2.87 16 18 C -0.14 -3.28 7.05 71.98 0.51 -2.77 16 19 C -0.07 -2.22 4.32 -19.86 -0.09 -2.31 16 20 C -0.13 -3.24 8.98 22.27 0.20 -3.04 16 21 C -0.14 -3.11 10.05 22.27 0.22 -2.88 16 22 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 23 C -0.14 -3.76 9.72 22.27 0.22 -3.54 16 24 C -0.07 -2.26 5.18 -19.87 -0.10 -2.36 16 25 C -0.13 -3.85 7.53 71.23 0.54 -3.31 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.88 5.85 -2.38 -0.01 1.87 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.07 3.83 5.93 -2.39 -0.01 3.81 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 13.75 7.62 -92.70 -0.71 13.05 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 1.55 7.43 -2.39 -0.02 1.53 16 35 H 0.07 1.68 4.37 -2.38 -0.01 1.67 16 36 H 0.05 1.33 7.43 -2.39 -0.02 1.31 16 37 H 0.07 1.59 7.64 -2.39 -0.02 1.57 16 38 H 0.10 1.67 7.59 -2.39 -0.02 1.65 16 39 H 0.14 3.02 5.90 -2.91 -0.02 3.01 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 42 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.08 2.10 7.31 -2.39 -0.02 2.08 16 44 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 45 H 0.07 2.37 1.99 -2.38 0.00 2.37 16 Total: -1.00 -68.22 344.06 4.82 -63.40 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.29 Total: 33.50 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.25 Total: -30.14 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.70 Total: -82.73 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.04 Total: -28.73 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -68.22 4.82 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183865155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.908 kcal (2) G-P(sol) polarization free energy of solvation -68.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds